Array 1 2933844-2935611 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012582.1 Pseudomonas aeruginosa strain PA_D21 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2933844 28 100.0 32 ............................ AAGAAGAGGGGCGCTGCCTGATTCAGGAGTGC 2933904 28 100.0 32 ............................ CCCTCAAGTCGAAGCGCTCCATCGAGCAGAAC 2933964 28 100.0 32 ............................ ACCAATGGACCAGCAATCGAACTCAAGAACGA 2934024 28 100.0 32 ............................ TGGCGGCATACCGTCGAGGACTGAAGCCTGAC 2934084 28 100.0 32 ............................ TTATCCATCGCTGCGCGCCCTCCTCGGCTCGT 2934144 28 100.0 32 ............................ ATGTCGCGTCGTCGATGTGCTTTGTGGGCATC 2934204 28 100.0 32 ............................ GGTGTCCCGGGCACCCTGCTGGACCTGTTCAC 2934264 28 100.0 32 ............................ TGGCCCGAACCCGCCTGCGCCTACAACGCGAT 2934324 28 100.0 32 ............................ CCACCATGTCGGCGGTGATCGTCACCGGCACC 2934384 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 2934444 28 100.0 32 ............................ AGATCACCGAGCGCTATTCGGAGCCGGCCGAA 2934504 28 100.0 32 ............................ TCTTCGCGTCCCTGGCCTTGGCTCGATACAGA 2934564 28 100.0 32 ............................ ACCGAATCCGCGACTCGTACCGAGTCGCAAAC 2934624 28 100.0 32 ............................ GGGTGGCGGAACCGACTGCCGAATATCACTCC 2934684 28 100.0 32 ............................ CTCTCCTGAGCGCTGAGGATGCAAGAGCCCGC 2934744 28 100.0 32 ............................ TTCCGCCAGTTGCCGAAGCGCCCGAAATAGAG 2934804 28 100.0 32 ............................ TGAACAACCCGGCGCTGCGCGACTATCTGCCG 2934864 28 100.0 32 ............................ GGCAAGCCATTGATCAGCAGGCCGGTATTCGG 2934924 28 100.0 32 ............................ TATGCCGCCCAGCGTGCCGCCCAGGGCGCCGC 2934984 28 100.0 32 ............................ ACGAACAGCGCTGCGAACTCGCCAAGGTCTGG 2935044 28 100.0 32 ............................ TATCGAAGAGTGATCTGCGCTGCTGTGGCGCA 2935104 28 100.0 32 ............................ ATGGTGCTGTGGGAGCGTGGCAGCGAGTCGCT 2935164 28 100.0 32 ............................ ATAGAGGATCAGATAGCGCCCGACATGCCCGG 2935224 28 100.0 32 ............................ TCGTAATCATTGAAGCCCCGGGCAAGCTGAAA 2935284 28 100.0 32 ............................ ATGGGGTCTACATCAGCGATGCGGCTCTGTCC 2935344 28 100.0 32 ............................ ACTTGCAGAAGCCCCAGGACTTGAAGCCACTG 2935404 28 96.4 32 C........................... ATCCGTCACCGGAATTTGCGCGTTGGCCGTGC 2935464 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 2935524 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 2935584 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 30 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2944694-2944126 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012582.1 Pseudomonas aeruginosa strain PA_D21 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2944693 28 100.0 32 ............................ AGGTCGAGCAGCCGAACAAGTTCGGGTTGATC 2944633 28 100.0 32 ............................ ACGTCGAGAAAGTGCCGCCCTTCCTGTACGAA 2944573 28 100.0 32 ............................ CTGACGATCTGGCCGACCGGCTGAAGTCTGCC 2944513 28 100.0 32 ............................ AGCGCCTGGACAATGCGCAGCCCAGGCGCTGG 2944453 28 100.0 32 ............................ AGCATGGGAAACCCGTCAAGGCCCGGATACTG 2944393 28 100.0 32 ............................ TGAAGGCGTATCTCAAACACACCGAGTTTCAG 2944333 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 2944273 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 2944213 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 2944153 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTCTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //