Array 1 30561-27925 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIT01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE471 TYPHIMURIUM_S14_trimmed_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 30560 29 96.6 32 ..T.......................... TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 30499 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 30438 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 30377 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 30316 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 30255 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 30194 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 30133 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 30072 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 30011 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 29950 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 29889 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 29828 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 29767 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 29706 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 29645 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 29584 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 29522 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 29461 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 29400 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 29339 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 29278 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 29217 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 29156 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 29095 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 29034 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 28973 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28912 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 28851 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 28790 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28729 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 28668 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 28606 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 28503 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28442 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28381 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28320 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 28259 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 28198 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 28137 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28076 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 28015 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27954 29 96.6 0 A............................ | A [27927] ========== ====== ====== ====== ============================= ========================================================================== ================== 43 29 99.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //