Array 1 335965-337091 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBMJ01000003.1 Streptomyces sp. 1331.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 335965 29 100.0 32 ............................. GCTGCACCCCCCCACACCCCCCCGGAGGGGGA 336026 29 100.0 32 ............................. ACGTCCTGTCGCAGCTCAGCGACGGACGCGGG 336087 29 100.0 32 ............................. GACGGCTCTACCGACTGGAGAACTCCCTATAG 336148 29 100.0 32 ............................. ACGCCGACCGGTGGCGAATCAACGTGTGGCAG 336209 29 100.0 32 ............................. TCCGGCGATCTTCGCGGAGTCGAGATCCTGAA 336270 29 96.6 32 ............................C GTCGCGTTCAACGAGGACGGCCCGGCGAACGT 336331 29 100.0 32 ............................. CTCCGCATCACCCTGGCCCCGTCCAGCTCGGT 336392 29 100.0 32 ............................. CCGAGCACGGCCCCCCTCCCAGCCAGCCGTTC 336453 29 100.0 32 ............................. GAGATCGGGTTGTCGTAGGCAGCCGCTCCGCC 336514 29 100.0 32 ............................. TGGTGGACGAGTACGTCACCGAGCAGGTGCCG 336575 29 96.6 32 ........T.................... GCGGCGGTTGCCATCGAGGACGACGTAGTCGG 336636 29 100.0 32 ............................. ATTGCCGCGGGTGCTGTCCGTGGCAGCCTCGC 336697 29 100.0 32 ............................. TTCGCGCTGCGGGTCCTGGCCGGGTACACGGC 336758 29 100.0 32 ............................. CGCAGGGAGAGCCTGCGGCGGTCAGTCATGAT 336819 29 100.0 32 ............................. GTTCCGCTCGAATCCGCGAGGCGGGTTCGGTG 336880 29 100.0 32 ............................. TACCCATCCAGGGCTGTGGAGTTGTACGCCCA 336941 29 100.0 32 ............................. TGGTTGAGCTGGGCTGCCATGACCTTGGGGCC 337002 29 96.6 32 ...............A............. GTTCGACTGTCGTGCCGGGCCGGGTGTCCAGC 337063 29 93.1 0 ............T...............T | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.1 32 GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : CCCGCTGCACCGGTGCCGAGCACCGAGCCCAAGCCCGAACCCGTCTCCGCTGCGGACCCCGACCGATTTTCCGCGGAAAATTCCGACCCCCTCCCGATGCCCGAGCAGCGCGCCGTGGCCCCGTCGACCGACGAACAGCCGGCGACCACTACCCCGCAGACCACAGGCCTCGGCAACGTCGACTGGCATGACGTCGAGGAACTGGCAGACGCCATCTGCCGCACCCTCTCCGCCGACGAGGCCTACCGCCTCGCCGACGCCCTCGCCAACCGCCTGCTGACCACCAGCAGCTGACAAACCCCCGTGGTGTCCCGCCCCCGCCCAGTGGGTGGGGGCGGGACACCACAACGCGTTGAGGCCGGCACATTGTCAGACACAGGTGACACGATGTCCGGAGCTCCTTGACTCCTCAACAGCCCACCACATCGACAAGCACCCGAAGCCGACGCCCCCTCAGTCAAGAAACAGCAAAGCCGCCACTACACCGCAGGTCACAAAGA # Right flank : TGAAGCACAGGCGCGCCGGGCCCTTCCTGGTGGTGTCAGGCCGGGTGGACGAGGCGGCTGTCGTAAGCGAAGACGACGGCCTGGATCCGGTCGCGGAGTCCGAGTTTCTGCAGGATCCGCCCGAGGTGGGCCTTCACGGTCGCCTCGGCGAGGTGCAGGGCGGCCGCGATCTCGGCGTTGGACAGGCCGCTACCCACCTTGACGAGGACGTCGCGTTCGCGCGTGCTGAGCCGGCTGAGTCGTTCGTCGTGGTGGTCGGTGCGGCTCCCGTGGGGGAGGTACGGCCGGAGGTCGTCGAGCAGGCGGCGGGTGATCCTCGGGGCGAGAGCGGCGTCGCCCGCGGCCACGTTGCGTATCGCGGTGAGGAGTTCCTCGGGCCTGGCGTTCTTCAGCAGGAAGCCGGAGGCGCCGGCGGCGAGTCCGGCGAAGGCGTATTCGTCGAGGTCGAAGGTGGTGAGGATCAGTACCTTGCTCCTCGGGGAGATCTGGGTGAGCCGGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15083-16208 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBMJ01000002.1 Streptomyces sp. 1331.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15083 29 100.0 32 ............................. TTTGCCGAGCTGGCTAAGGAGCTGGGGCTGGA 15144 29 100.0 32 ............................. TTTGCCGAGCTGGCTAAGGAGCTGGGGCTGGA 15205 29 100.0 32 ............................. CCGGTGCTGGGGTTCAGCTTTTGCGTGGTGAC 15266 29 100.0 32 ............................. GCCGAACTGCGGACCCAACTCGCCTACGTGGT 15327 29 100.0 32 ............................. ACCTGGGAGCGCCGCTACGCCGTCGAGGACAA 15388 29 100.0 32 ............................. GCGATCGGCAAGGCGGTGTCGCTGTGGGAGCG 15449 29 100.0 32 ............................. ATCCGGCCGCCGGTGAGGTTGGTGTGGGCGGC 15510 29 100.0 32 ............................. CCGTCGGCGTAGGGGCGGCCGTCCTCATCCAC 15571 29 96.6 32 ......................G...... TCAGACACTCCGGCGGACGCGGCGACTCCGCT G [15594] 15633 29 100.0 32 ............................. AGCCGGCCGCCGAGCCGCACGACACCACCGGA 15694 29 100.0 32 ............................. ATCTGGCGGATCTGGTCGGTGTACATCGCCAT 15755 29 100.0 32 ............................. GTGATGTTGCAGAGGCTGGTTCCGCAGTCCGA 15816 29 100.0 32 ............................. GAGTACGGTCCGGCGTTCGGCCTGTACATGGA 15877 29 100.0 32 ............................. TGCTCTACCGGCTGTGGTCCTTGAAGGGGCGC 15938 29 100.0 32 ............................. CCCGCCATCGCGCACGTCCTCGGCGTCGAGGT 15999 29 100.0 32 ............................. GCGCTCCTCTCCGAGGCTGGCATCCCCTTCCG 16060 29 100.0 32 ............................. GAACCATCCTGGAACCCCGCCTTCATGGCTTC 16121 28 89.7 32 .........T.......-........T.. TCGGAAATGCGTGATCCTCCCTTGGATCGTCA 16181 27 93.1 0 ........--................... | G [16198] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTCCTCCCCGCGCCAGCGGGGGTCAGCCG # Left flank : GGTGATGGCTGCACGTCGGCTCGCTACTCCCCGTCGCGCACGAGCCCCATTCAGTTCCGGACGAACCCGTGGCGCAACAGGGAGAGCCCGATCAAGGCTCCTGGCTCAGCGACGAGGTCACCGCGCCTGACGGCGATCGACGACGGGAGAGCGCCGGGATCCTCCCCGGGGGCGCCCCCTGCATTGACGTTGCGGCACCCGGCCGTCACGTGTGTGCAGATCAGCAGGCAGCCGAGTCTTCCGGACAACGGACGGAAGTGCCGAGCAGCGGGAATTGACTTTCCCACGTGTGACTCCGCAGCAATGGCCGGCTGCCGCACGGATCGACCTGGGCTCTGGCAAGCGGGAGGCTACGTCCCGTCGCAACGTCACCGGCACATGGGACGATGTCCCCGGCTCTTTGACACCTCAACAGACCGGCTGCTGCACACGCTCGCTTGGCATCACGCCAGATTTGGCAAAGAAACAGCAAAGCCACCGCATCGCCCAAGGTCAGAAAG # Right flank : GCCGGAGAACATCATCCCCGCCCGTGGAGCTAGGGACGGTTCGCGAGGCCGTCGCCCTGGCGCTGGGTGGCCGGGCCGGTACCCGGCTCGCCGAGCACCTGGCGGTCGGGACCGGCCGGGACATCCAGATACGCCTGATCCGCTCGCATCCGGACCCGCCCACCGGACGGGTCCGGATGCTCGGCGTCGACGATTTCGCCCTTCGCAAGGGCCACGACTACGGCACGGTCCTGGTCGACATCGAGGGCCGCCGTCCCGTCGAGGTCTTGCCCGAGCGGTGCGCCGATGCCCTGGCGGAGCGGCTCACCGAGCATCCCGGCGTCGACATGCTCTGCCGCGACCGGGCCCGCTACTACGCAGATGGGGCTGACCGGGCGCCGGCACGGCGACGCAGGTCGCGCACAGGCTTCACCTCTGGCAGAACCTCGGCGAGACGGCCGAACGGCTGGTCGCCCGCCCGTGCCCGCAGTGGGTCCCGCCCATGCCCGAGAAGGGGCGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCCAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19017-22217 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBMJ01000002.1 Streptomyces sp. 1331.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19017 29 100.0 32 ............................. CGCTCCAGTCCGCCACCGCCATCGCGCTGGCC 19078 29 100.0 32 ............................. AGGGCCTTGATAGCGGCGGTCTCGTTGAGCGC 19139 29 100.0 32 ............................. CGGCACCACCAGCAGGCCCTGGCCGACCTACG 19200 29 100.0 32 ............................. GCCGGTAGCACGTCAGCCGACCCGGCACGGGC 19261 29 96.6 32 ............................A ACAGCCCGTCCTCGAAACCGGATCGGGTGACC 19322 29 100.0 32 ............................. AACGGCGACCGCTCCCCAGGGCTGTTCGGCAC 19383 29 100.0 32 ............................. AACGGCGACCGCTCCCCAGGGCTGTTCGGCAC 19444 29 100.0 32 ............................. GCGGTTGTCCACCACGAAGTGCGGGCCTTGAG 19505 29 100.0 32 ............................. GTGGTGACCACCCGTCACCATGAGGAGGAAAC 19566 29 100.0 32 ............................. TGCGCCATGGACGAGGGGTTCCGGTGCTGCTG 19627 29 100.0 32 ............................. TTGGCGTGGCGGCTCATCCAGGCGGCGCCGAT 19688 29 100.0 32 ............................. GTGGTGACCACCCGTCACCATGAGGAGGAAAC 19749 29 100.0 32 ............................. TGCGCCATGGACGAGGGGTTCCGGTGCTGCTG 19810 29 100.0 32 ............................. TTGGCGTGGCGGCTCATCCAGGCGGCGCCGAT 19871 29 100.0 32 ............................. AACGCCCTTGCCTGGTAGTCGGGGTGGCCGAG 19932 29 100.0 32 ............................. GTGATCATCACGCCGTGGCTGGGCCAGGGCGA 19993 29 100.0 32 ............................. CCCGGCCTGCACGCCCTCCATCCACGCGGCCC 20054 29 100.0 32 ............................. TCCTGGTCAGACGAGGAGCCGTCACCCCACTG 20115 29 100.0 32 ............................. CCCGCCGCCACCGAGGAGCAGCGCAAGACCGC 20176 29 100.0 32 ............................. AGGGAGAGGCGAAGCGACGCCCACAGGAGGAA 20237 29 100.0 32 ............................. TTGAGCACCGCCAAGCTGGCCGCCGCCGCAGC 20298 29 100.0 32 ............................. CACGGGCACTTTCGGGGGTCGGGCGGCTACCA 20359 29 100.0 32 ............................. CCGCCTCGAACTCGCTGGTGCGCTGAGTGACG 20420 29 100.0 32 ............................. GACGTCAGCCTCTACGCACGTGTCCCCTCCGC 20481 29 100.0 32 ............................. GACCTGATCACGAAAGAGTGACGGGATCTGCC 20542 29 100.0 32 ............................. CGCCACGGTTTCGCCGTGGCCTGATCCCTAGG 20603 29 100.0 32 ............................. GCGTGGTCGGTGATCTCGGACAGCGAGATCTC 20664 29 96.6 32 ............................T ATGGCCCCGGACGGCCTGCTCACCCGCCGACA 20725 29 100.0 32 ............................. CCAGGCGTGAAAAGCGCCAACCCCCCGTGAAC 20786 29 100.0 32 ............................. ACCCCAGGCCAGGCCATGCGGGCGATGCGGCG 20847 29 100.0 32 ............................. CTCCACGGCGCACCGGACTTCTCCTGGGGGGC 20908 29 100.0 32 ............................. TGCCTGCTCGCGCTGGCCCGCCTCGGCTGGGA 20969 29 100.0 32 ............................. TCGTCGGTCGTGGTGAACTCCTGGAGCTTGGT 21030 29 100.0 32 ............................. CCGTGCCATGGCTGGGCCGCCGCCACCACCGA 21091 28 93.1 32 .....-..T.................... CCGCTGACCTTGGGGTTGCCGGTGCGGATGTT 21151 29 100.0 32 ............................. GCCGTCCTCATCGGGCTCGCTGTGATCCTGCT 21212 29 100.0 32 ............................. GGCACCAGTTGGGAGGTGATCGGCGGACAGCT 21273 29 100.0 32 ............................. TCGTCCGGCACCGGCGACGGCACCGGGAGGGG 21334 29 100.0 32 ............................. CAACAACGCTCGGACGTGGCAGCCCGAGAGGG 21395 29 100.0 32 ............................. AATTCCCAGTCAACGGCACTAACGGCACTGTC 21456 29 100.0 32 ............................. GCCGAACTGGCTGTCAGCTCCATTTGTCTGTT 21517 29 100.0 32 ............................. CGCTCGCCATGTCCGAGGACGTGCAGCCCGTC 21578 29 100.0 32 ............................. CAGATCGAGGAGACGCGCCTTCGCCTGGAGCA 21639 29 100.0 32 ............................. CGGAGGAGCTACTGCGGCCCCGCCCGTAACGG 21700 29 100.0 32 ............................. GTGCTGGCCGCCGGAGTCTCCTGCGGACTCGT 21761 29 100.0 32 ............................. TAGTTGTCGACCGGCGGCAGGCTCGGGCGGAC 21822 29 100.0 32 ............................. TCCGGCCGCCTGCGCCTGGCAGACGGTGCGGC 21883 29 96.6 32 ........T.................... TCCATCTTCGCGACGGTCAGGTCCGTGAAGTA 21944 29 100.0 32 ............................. GACAGACCGGTCTGGTGGGCTAGCAGGCCGCC 22005 29 100.0 32 ............................. TACTTCCGGAGTGCGGCGAGTACGACCACGGC 22066 29 100.0 32 ............................. TGCTCGTCAGTGTCGAACTTGTCGGCCGGGTC 22127 29 93.1 32 .....A......................A TGGGCGAACGTCACGGTGTTGGAGCCGGTGGG 22188 29 82.8 0 ........................CTGTC | T [22209] ========== ====== ====== ====== ============================= ================================ ================== 53 29 99.2 32 GTTCTCCCCGCGCCAGCGGGGGTCAGCCG # Left flank : GAAGGTTGTGGCCCGCGTCCGCGTCGGGATCTCGGTTGCCGAGTTTCAGTCGGAGGCGTCAGGGAGGGCCCCATCGGGGCTTTTGGCTCCTGGCTCGACGACGAGGCGAGCGCGCCGGATGACGGCTGACGATGGCGGCAGTGCCGGGGGCGGGGGCACGCCTCTTTGCATCGGCCTTGCGGCACACGACCGTTCGTGCGCCGGTCAGCAGACGGGCGGATTTCCGGGTGGCGGGCGGAGGAACTGAGCAGCGGGGACCGGCTCTCCTGTAGGTGGCTCCGCCCCACCGGTGCCGCGGGAACGGGCCGGGGCTCTGCCGGAACGGCGGGCTCAGTTCCTCTGGGGGCAGCTATTGCCTCGTCACAGCGTCACCGGCCCGTGGCACGATGTCCCAGGCTCTTTGACACCTCAACAGACCGGCTGCTGCACAAGCTCACTTGCACCACGCCACATTTGGCAAAGAAACAGCAAAGCCGCCGCATCGCCCAAGGTCAGAAAGG # Right flank : CTCGGTGAGCGTGGCGGAGTCTCGGTGATCGTGGCGAGTTCGGCCTCGTTCGTCTCGGTGAAGTTGGCGAGGATGGCAGATGAGTCCGGTCTCATCGGGCCTGGTGGTGTCTCACTCATCCCAGGCGGTAGTCGGCCGATTCGCGGCGCGCGCGGCTGGCCGTGCCCGGTTTTCACCTTTCAAGGTGGATTGAGTCTCATCTGATCCGGCTGGTCTCACTGGACCCGTGATGGTCGTCCCATTGACAGGACGCACGCACTCTCGGATCGACGAACTCTTGCAGTTCCACGGCACGGGCACCCGTCAGTCCCGCGACTCGCCCAGACCTTCAAGGTCTCGCGCGGAACGGTCTATCGCCACATCAGCCTCCCCACCGGGAAAGACGACGGCAGACACTTTGAACCGAGCCCGCTACCAGCAGCCGCAGATCCCTCCAGAGGTCACGACTCCACGACGCGCGGGCTGGCGAACGCCGAGTTGTCGATGACGACGTCCATCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCCAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 24745-24892 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBMJ01000002.1 Streptomyces sp. 1331.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24745 29 100.0 32 ............................. TCCTTGGTGTGCAGGAGCGGGTACGTACCCCA 24806 29 93.1 30 .....................G......C CGAGCGGGTGGCCGGTTCCAGGGCTGCGGC 24865 28 89.7 0 .G...................-....A.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTTCTCCCCGCGCCAGCGGGGATCAGCCG # Left flank : CGATGGTGCAACGCTGGCAGACACGCGCACGCAAACTGAACTGGCCCACCGAAGCGGAGACGATCACGCAGAACAGCGAGGCCGGCGCGATCATCTCGCACCCTGAAGTCGCGACCCTGGCCGCCTTCCTGGCGCCCTTGACCGTCGCCCCGACCGAGTTCTTCTACGCGGAGAACAAGGAGGAGATCCGCGCGCTGGTCGACCGGACGAGAGCGGCACTCGGGCTGACACCCCTCGCACCCGCTGGTTGCCAGTGGCCGTGCAGTGCCCCCCGCACGTCCGCTGATGCGATCTGGAACCACGTCGACCAGGTCCGGCTGACGCGCGGGCGTCACCGATGGCGCCAACTGAGAAGCGCCATGATCCCTGAGCTTGGCATCCCCGATCCGTCTCACCAAACCTGGCAATCCGCAGCTCGACACAGTCGCGTCCGCCATGATCAGTGAGACCGGACACGGGGGTCAGCCGGTGTTGAGCTTCTGGTTCATGGGGCCCGGGTT # Right flank : GGAGGCCGGTATTGTTTTCGACAGGTAGAACGGGAGCCACCTGGGCACGAGTTCGAGAGCCAATTGTGAACTCGTGAACGGCTTTTGTATCGGAGGATCGAGGCCAGCCGCTCACACTGTTGGCACCTTGTTCGAGCGACGCCGTCTCAGGCCGGCTCGGGGGCGGGGCCCGATCAGACGGATCGTCCTGAAGGCGCACGTCGCCCGGTTCTGCAGCGGCATGGAGAAACCGGCCCGGCCATCCGGCTGCCGCCGAATCAGCCAAGTGTTCCGGGGGGCCGGGCGGTGACTGGCGTGTACCCGGGTCGTTGAAGCAGGTTGAACAGCCGAGCTGTGCGGTGCCCCGGTCGTGGTGGCCCGGGGCGCCGTGGTGTGGCGCGGCTTCCGTCTTCCCCGGGCCTGGACGCTTCGGCGTCCTGAGGCCTGGTCCAGGTGCGAGCGAGAGGACAACGGCATGGCCGGACGATCTGGTCTGTATATCGGTGGGATTCTGGGCAAGG # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCCAGCGGGGATCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 41941-42700 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBMJ01000002.1 Streptomyces sp. 1331.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41941 29 100.0 32 ............................. ACCGGTGAACTCGAAGGCCGGCCCCGCACCCG 42002 29 96.6 32 ...........................T. GCGTCCTGTGCATCACGCCGCGTCGAGGGCGT 42063 29 96.6 32 ............................A CCATGCCGGAACCGAAGGCGTTCGCCAGGTCC 42124 29 100.0 32 ............................. TCGCCAGGGGTGCTGTGCCAGTAGTGCCGGTG 42185 29 100.0 32 ............................. CCCGTCCGTGACGAGAACGGGGCTCCTATCCT 42246 29 96.6 32 ............................A CGGGTCTTGACTTCGGCGTGGGCGATGGTCAT 42307 29 96.6 32 ................T............ GGCCGAGTCGGCCTCCAGCGTGCCACCGCCGG 42368 29 100.0 32 ............................. CAAGAGGCGTGGGAGGAGTACCTGTCTCAGGT 42429 29 100.0 32 ............................. GCCGCTGAACTCGGCGCCGAGGCTGCCGCGCA 42490 29 100.0 32 ............................. ATCTGCGCGGCGGTCATGCCGAACATGGCCGC 42551 29 96.6 32 ............................A GACTTCGAAGCCGCCCTTCGCATAGCTGGCGG 42612 29 96.6 32 ...A......................... TACACGGCGCTGATGACCGAGCAGGGCATCAA 42673 28 93.1 0 ...A..................-...... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.9 32 CTCGTCCCCGCGCCAGCGGGGGTCAGCCG # Left flank : CATGGAGCGCGTGCGCAAGGCCCGGCGAGCGCTCGCCCCGTGGCAGGAATCGGCGGCCATCCAGCACGTGGACCGCCGACTCTACTCCTGGTCGGCGACGCTCAGTTCGCTGCAGCGTTGAACTCGGCGATCAGTTCCGGCAGTTCCGTCAGCGAGTCGATCCGGACCGTCGCCTGCTCGGCGGCCGGGTCGTGCTGATGGATCCAGCCCCACGGGCCGCGTCGGATCAGCGCCGTCCGCATCCCCGCCTTCGCGGCGGGGAGCACGTCGTTGTCGAGCCGGTCTCCGATCCCTGGGGCCCTGGCCCCTTGGCCCCGCTCCTGCCAAACCGTGAGGCGGTGGAACTCCCGTACTGTCGCCCACGCCACCATCGGGAGACATGGCACGATGGGCTACACGCTCTTTGACACCACAACAACTCACCGAAGCCCAGCGCCTCGGCGACCGTCGATCATGGCAAAGAAATAGCAAAGACGACGCTACGTTGCAGGTCAGAAAGC # Right flank : GCCTACGGCGTGCGGCCGGGTCAGCGGCTCGTGGTGAGGACCGTTTCCGTCCAGCGGCGGAAGTGGGTGATCAGGGCGGCGGAGCGGGCCGTGCCGTGGGGGAGGGTGGGGAGGAGGGCGAGGGCTGGGAGGGAGGCGGTGAGGGCCAGGATCAGGGGGATGAGGGCCAGGGCGACGATGAGGGTGCGCTGGCAGGCGACCAGCTGGCGGGCGATGGCGGTGATCATCAATTGTCCTTCGGCTGCGGGGACTTGGGCTCGGCGCCTACGCTTTCGTCCGGTGGCGGCGTTGCGCCAGGGGCAACGTGTTGCCGATCGGCGGCAACGGAACGCGGCGGTGGCGGAGAAGGCCGGAGGGGTTGCGGGTGTTGGAGCGACGCGGGGAGGTTCCGGAGCCTTACGAGCCGCCGGAGCCGGAGGTGCGGGCGTTCGTCGAGTTCATCGGGCGGCTGTTCGCCGTGCTGGGCACCACGCTGACCAGGTACGCGGCCCGCTGCAGCC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCGCCAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 59821-60394 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBMJ01000002.1 Streptomyces sp. 1331.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================= ================== 59821 29 100.0 32 ............................. TCGCCGAACCGGCCGCTTCGGCCGACGTTTCC 59882 29 100.0 32 ............................. GATTCGCGTCCAGCACCGGCGTAGTGATCGAT 59943 29 100.0 32 ............................. TTCTGGGTGCCCGGGCGTGGGATGGTCCGTCA 60004 29 100.0 32 ............................. ACGATCCGGTCTGATGATCTGCTGCCTGGTGA 60065 29 100.0 32 ............................. CTACTCGAATCGTTCGCGGTGGATCAAGGCGG 60126 29 96.6 209 ......T...................... ACCCTCCCCTGCTTGAAGGCCCTCCTCGTTTCGCGGCCGTGTGCACCTTGCTCAGGTGGATCCCACCCCACGGAGCTGGCGCAGCCCGCTCGGAGTCACGGTGACACGAGCTCCGCTGGCAGAGCGCAAGGGGAACCGGCCCCGGATGATTTCCCATCAGGTGGTGGCGAGCGGGGGCTCGGGACCGGCCGCTGACACAGGTGCCCCTT 60364 28 82.8 0 G.....-..C...............T..C | C,A,A [60379,60383,60385] ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================= ================== 7 29 97.1 62 CTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : GGACTTGGACTTGACGCCCTTTTCAACGGCGATGATCTGGTTCAGCTTTGCCACGTCCGGGACGCTATCAGTCCCGAACTGATCGGCGACACCGAATTCTTGACCGCTCGCCGCTCGCCGCTCGGACCTCGGGAAGGGAGGGGGCGACCGGCCGGCCCCTCCCCTCCGCCCCAGGGCGGGACGGCGGCCCTGCCGCCGGTCAGCGCACGGTGACGGTGAAGACGGGCGAGACGGAGTCCCCGCTGATGATGCGCTGCTCGTTCACATTCTTGAGCCCGAGCTTCACCCCGAGCCAGTAGGAACCGCTACGAGCCCGGAAGCGCCCCCGAGTTCTACGCACCACAATGTTCGCGACCACCCCGCGCATCGCACGCACATGGGATGCTTTTCAAGACCTTTGACACCTCAACAGCGCCCGCAACATCAGGACCTTCGGACAGCAGCCCACCAAGCCATGCAAAGAAGTAGCAAAACCGCTGCATCGCCCCAGGTCACGAAGC # Right flank : CTCTGACCCTTACGGTTGCGGGCAGCCGTGGAGGAGGTCGGCGAAGGCCTCGGCGGCGGAGTCGCCGGGGAGGATGCGCAGGGCCGTGGTGTGGTCCGCGGTGGTGATCACGTAGTGCTCGGCGAGGTAGGAGAGGTCGTCCCAGGGTTCCCAGGTGTGGGCGCGCAGCAGGACGTGGCCGCAGCGGGTGCAGCCGATCCACGGGACGAGCACCAGGTCGGTGAGTTCCGGCTCGCTGCGGCCGGTCACCACGTCGAGGTCGTCACCGCCCTCGCCGTCGAGCAGCCGGACCGGGGCGGGCGCGCCGTCGCCCGGGCAGCGCAGGAGGCCGGGCGTGAGCGTCTCGCGTTCGCCCCACTGCTCGGCGAGGACGGAGATCCGTGCCCGGTCCGTGCCGCTGATCGGGATCTGGCGGGCGAGCAGGCCCTCCACCAGGAGGCCGAGTCCGCACTCCTGTTCCCCGATGTCCCAGCATTCCTTCACCTCCTTCGAGGCGGGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 104002-102876 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBMJ01000002.1 Streptomyces sp. 1331.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 104001 29 96.6 32 ...........A................. TCGACCAGGACGTCTACCCACCGGTCTTCGGC 103940 29 96.6 31 ...........A................. CGACGGTGGCACGGGCCCACGCTTCGGCGGC 103880 29 100.0 32 ............................. CCTATCGGCTACGCCGCCCGAGGTTCGTTCAG 103819 29 100.0 32 ............................. TTGACGATCACGAACAGGCGTTGAGCCTCTGC 103758 29 100.0 32 ............................. CTTCACGAGAAGAGCCTTCGCCACGTCTCGGG 103697 29 100.0 32 ............................. TCGTTGCGCTCCCCCGCCCATATGACGACTCC 103636 29 100.0 32 ............................. GAGACGGACAGCGAGCGCGCCGCACCCCTGGT 103575 29 96.6 32 ...........................A. GTCGGCCAGGCCATGGCATTCATCTTCTGAGA 103514 29 100.0 32 ............................. TACTCGGTGATGTAGATCGTTTTGCCGTGCAG 103453 29 96.6 32 ...........A................. CTCAGGGCACGCCGCGAGCGCCGCCGGACCGC 103392 29 100.0 32 ............................. CTGCGCATCGAGGCCGGCTCCGGCGACGACGC 103331 29 96.6 32 ...........A................. TACTCGTCACAAATGCCCCGCCCGCTCACCTT 103270 29 96.6 32 ...........A................. TACTCGTCACAAATGCCCCGCCCGCTCACCTT 103209 29 96.6 32 ...........A................. CTGAGCCCGGTCTGATGCGCCAGCAGACCGCC 103148 29 96.6 32 ...........A................. TACATCCACGGCCAGCTGATCCGCAAGGGCAA 103087 29 93.1 32 ...........A.........C....... ACCGGTCGGCACACCTCGATGCAGCGCGAGCG 103026 29 93.1 32 ...........A.T............... ACGTCAGTGACGGCGGTGGCCGGCATCACCGG 102965 29 93.1 32 ...........A........A........ CCATGTCCACTCGTCAGCAGATCATCGACACC 102904 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.5 32 CTCCTCCCCGCCCCCGCGGGGGTCAGCCG # Left flank : GGATACGGACCGGGCAGGCCGGCACTCTTTCCCCACATACGGGGATCCGGGTCCGCGGGTCCGATGTCGCCAACGGGCTTGCTGTCAGTCATGTCTGAAGATCTATCAGCTACCACTGACAAATCTGGTGGCCGCAGAATCAGGACCGACGGCGTGACAGAGCTCAGCTGCTGGGACCTCTGCACATCGCCCCAGGTCAACGGCACCCGAGGGCACGCTGGGGTAGTTCGTGTAACGATTCCGGCACCTTCGACCAGGTCGAACCACCCCGTAAGTTAGACCCTTTGAGCACCAAGCCACGTCGAGACGGCTTGCCCCCACGCGCACCCAGCAGCCGTCCACGCTCCCGGAGTTACGGAGCCGGGCACCGGGCGAACAATGGCATCATGTGAGTTGTTCCTTGACACCTCGACACCGAGCAGCGCATCAGCCGATGCATTCGGCATCAGCAGCATGGTCAAGAAGCGGCAAACCCCTCGCTGCGACGCAGGTCACGAAGC # Right flank : TCGATCGCGTTCCACCTCGAACGCCAGCACCGCTCTTCCTCGCCCGCGGAGTCAGCCATGCACCGGTGCGGGGACAGTGCGCTCGGGGCGCTCCTCAAGGCGTAGGTGACCACGGGGGCTGTGGACGCGGGCCTACCGGGCTCTGTTCCGTGGTCGCGCTCGGAACGGCACCGGCGCTCACACGGGTACCAGACGGAATCGCCCCGGCAGTCACGCCGCTGGGCGGTCCTGCTACCGGTCGACCATCAGCTCAGCCGACTCGGTCAACGAGGTGACCGTCCAATCCGCTTCTGGCGCGCTGGTCACAAGGCCGATCGGACCGCGGCGGATGTGTGCGGTCCGCAGGCTGGGACAGTGCTGTTGGTACCCGGTTTGATGATCCGAATCGCCTCCCCCGGTCAGCGCACCGGCTTGGCCACGAGCGCCGTGCCTGTCCGGGTGCGCAGGTGCACTGCCCTACGGCCCGTGCGGTGGGTCGTCACCAGCCCCGCACCGCGCAG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCCCCCGCGGGGGTCAGCCG # Alternate repeat : CTCCTCCCCGCACCCGCGGGGGTCAGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //