Array 1 299961-304060 **** Predicted by CRISPRDetect 2.4 *** >NZ_WDPC01000003.1 Bifidobacterium dentium strain BIOML-A1 scaffold3_size498197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 299961 33 100.0 34 ................................. ATATAATAAATGGGGTGTGATGCCATGACCACAC 300028 33 100.0 34 ................................. CTCGTGATATTGTCCGGCCCAGACGATGTTATTG 300095 33 100.0 33 ................................. CGTACCAGAATAGAATCCCTTGCTCATGGAGTC 300161 33 100.0 34 ................................. TGGTAAAGGTGGATGATCCTGCCCTTGAGCCCCG 300228 33 100.0 33 ................................. TGCTTGACCGGATCGCCGTCGCCGGTCTCGTCC 300294 33 100.0 34 ................................. CTCCTGCGGGAGTCCTTCGTGCCGGACCGGTCCC 300361 33 100.0 34 ................................. TCCGCGTTCCCTGGGGCGGTGTCGCCGAGGGTCG 300428 33 100.0 34 ................................. CAATGCGCGACCCTGTATTTGGCGATCGTCCTGT 300495 33 100.0 34 ................................. ATCAGCCCCTGGCCGGGCATCACGCCGGTGAAAT 300562 33 100.0 34 ................................. TATAAGCATCGCGGCAGCGTCACCCCGAACCCGT 300629 33 100.0 34 ................................. GTGCACGAGGGTACAGCGCTTGCCGGTGTAGGTG 300696 33 100.0 34 ................................. GATAAGACGACGGGCAAGCAGGTGCCGAACAGCA 300763 33 100.0 34 ................................. GATGCTACCGCACGCATGCTGACTTTCGACGCCA 300830 33 100.0 33 ................................. GTCGAAGAAGATTATGGAGACTTTTGGAAGCGC 300896 33 100.0 33 ................................. AACAGCAACGCCCCGCAAATCAACATGAGCGGC 300962 33 100.0 33 ................................. AAGGACAAGGTGCAGGCGAGCTCCGACGCCATC 301028 33 100.0 33 ................................. TCCACCTGATACAGACGGATATACACGTCTGCA 301094 33 100.0 34 ................................. ATCGAAGTAGACGCGGGTACCGAAAGCTTCGTCC 301161 33 100.0 33 ................................. CCCTTCTCCACGACGCCTTGACCCTCTACTCGA 301227 33 100.0 33 ................................. ATTAAGCGCGACTAACGCACAACGAAGTCTTTT 301293 33 100.0 34 ................................. GTAATCAGATGGCGGAAATGCAAATACGCAAGGA 301360 33 100.0 34 ................................. CTCCAGATCTTCCGCAGAACCGACGACACCGACG 301427 33 100.0 33 ................................. AGCGAAGGACTCCGGACAATCCGCCACGCACGC 301493 33 100.0 33 ................................. TTCAGGATGTGCATGTGAGTCTCCTTAGTTTCT 301559 33 100.0 34 ................................. CACATAGGCGGCAGTCTCAGCATCATCGGGATAG 301626 33 100.0 34 ................................. AGGTCAACAGTCACCCGCACCCCCTCCATCGCAG 301693 33 100.0 33 ................................. CCCTTCTCCACGACGCCTTGACCCTCTACTCGA 301759 33 100.0 34 ................................. ATCATCTGCTGTTGCCTTCCAATAAAATAAATGA 301826 33 100.0 33 ................................. AAGGTGTTGAGCGAAGCCGTGCGGTTGCGTTGC 301892 33 100.0 34 ................................. TTGACAAGGTACGTTTTGAAGACGCAGCCGATGA 301959 33 100.0 34 ................................. TTTTTTGAAAGGATAAGGCAATGAGCATTCCACT 302026 33 100.0 33 ................................. AAGATGATTGCGCATATATCGCCAAAAAAGCGA 302092 33 100.0 34 ................................. CTCTTCCAAGTGGCGTTTTATCGCAATGACCTGT 302159 33 100.0 34 ................................. TGGATCCCGAACTACGCCGCACAATATGCGGACC 302226 33 100.0 34 ................................. CGACTCTCACAATGGGACAAGAAGACACATGCTT 302293 33 100.0 33 ................................. AAAGCCATCCCCATTCACGGGGGTGGCTTTTTT 302359 33 100.0 34 ................................. TCTTTCTTACCGGGTACGGGAACGGGAACGGGGC 302426 33 97.0 33 ..G.............................. GAGACGGCAACCGTCCGATATTTGCGTTGGGCG 302492 33 100.0 33 ................................. ATATCGTCATTTTCAGTCCAACTGACCTATGTG 302558 33 100.0 33 ................................. CTCATCCAATGCCTCTTCGACCCGGATCGCGTA 302624 33 100.0 34 ................................. ATGTGCCCAAGGGTCAACTGGCCATACGGGGTCG 302691 33 100.0 33 ................................. CGGACAGGTACCGGCATTTGAAGAAACTGCTCA 302757 33 100.0 35 ................................. CCCTACTTGCGCGACGAGTTCACCGGCGTGCTCAT 302825 33 100.0 33 ................................. TCATCCACATGTGCGGGGCAGAGCGTGTAGATG 302891 33 100.0 34 ................................. CACAAAGTCGCGGATGTCCTTGTCCTTGATGCCG 302958 33 100.0 33 ................................. AACAAGGCGCTTGTCAAGCTGAACACGGAAGGT 303024 33 100.0 35 ................................. TTGGAAACTGCGGGTAGGCGGAGCCTTTTCCGTTC 303092 33 100.0 33 ................................. GCGCTCTTCGGACTGCACGCGACAGGCAAGAAC 303158 33 100.0 33 ................................. TGGTCGGTCTGGGTCAGGAACGGCGCATACCCG 303224 33 100.0 33 ................................. ACCATCAGCGTGCTCGACAGGACCCTCACCTAC 303290 33 100.0 34 ................................. TGGAAGGCAACGACAGATGAACGCATTCTCCATC 303357 33 100.0 35 ................................. ACCTATGTGCGCGGCCAAGCATACAAGAACCAGCT 303425 33 100.0 33 ................................. GCTGTCGATGACAGTCTGCGCATGGGTGCGATG 303491 33 100.0 34 ................................. CTCTGCAACCCTACGGGGTGACGTCCCCTCGAAA 303558 33 100.0 34 ................................. AGCTTGATTTGTCGGTAGTCCGATAATCCAATAA 303625 33 100.0 35 ................................. TCATGTTCCATTGCCCTGAGGTTGAGGATAGCCCA 303693 33 100.0 34 ................................. ATCGATCGCTATTGCGCCACGACGATCGACTTCT 303760 33 100.0 35 ................................. ATGAGCCGTGAAGTCAAGGCGAAAGTGCATGGAGG 303828 33 100.0 35 ................................. TCGAATTCGTCTACTCCGGTAGCCCGTGGGTGCCG 303896 33 100.0 34 ................................. AAACGAATACCGGAACCGACATCAATATCATCAG 303963 33 100.0 33 ................................. ACGTTGGTCTGCCCGTTGAATCCCGACAGGGAG 304029 32 84.8 0 ....................T.-A....A...C | ========== ====== ====== ====== ================================= =================================== ================== 62 33 99.7 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAGTAAATGAAGTGATGAAAATCATGGATCAAGAAAAAGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : CATGATGGGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGAAGCGTTGACCGGTATCGCCTTCACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCGTGGCGTGGCGGCGTGTCCGCCGGTGTGACCGGGTTGAGGAGGATTCGTCGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATTCCCCAGCCTAATATTTCTTGGTTTGAGACCGGGTATCGTCCCGTGTCTCAGATGTATTTGGATACTGCGCGGCGCCTGTCGGAGGCGTTGCAATGCGACCCTGTTGATTTTCTAATTGATTGAAAGGATATTGTGATGAAGGCTGAGGTTGTTATTGTTACGAGGTTGGAGCGTCATGGCGGGACGATGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 188015-188191 **** Predicted by CRISPRDetect 2.4 *** >NZ_WDPC01000004.1 Bifidobacterium dentium strain BIOML-A1 scaffold4_size365953, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 188015 24 100.0 27 ........................ GTAAAACAGTCGAAACCACGTTGCGAA 188066 24 95.8 27 .............T.......... AACAGGGTGGCGGATCCGAGGTGCGGA 188117 24 91.7 27 ..G.T................... GTCAGGACGTCAAAACCGGGGCGCAGT 188168 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTGGAGAATCGGACA # Left flank : GCAGACGCCCGCCGGCTTGATGCGTCCGAAAGCCCCGCGCGCAGGTTCGCGCATTCTATTGGAGCGGATTACGCCGATTTGGAGTCGTTTGGGATTCCTAAGCAAGGTTACTGCGCGCAATATCTTCCGTTTCAAGTCGCGCCTGGTCATGACGGTCGGAGGCGTTGCCGGATGCACGGCGTTGATCATATGCGGGCTTGCGATCAACGACACCGTGGCGGAACTTGGCGTCAAACAGTATCGCGATATCTACCGATACGATGTGATGGTCGTTGCGAACGATACCGATGCGGATGCAATGCGGGCGAAGTTGCGAGCGGACGGGCGTACGACTTCGACCATGGACATACGTGTCGAATCCGGTGATCTGGCGAACGATGAGGGAAGCGAGGGCATCCAACTTGTGGTGGTGCCCGAGGAGCATCTGGATGAACTGGGCGAGATGGTTACGCTCAAGCCGGTCGCATCCGGATGGGATGGTGTGCGCAAGTTCTTCGGAC # Right flank : AAACGAAGCGGCTCGAAGGCGGTGTTGGGCGACAGTGGGGTGATCGTGTCGCAGTCGGCGGCCAACGCTCTGGGCGTTAAGGCCGGCGATACGGTGAATCTCACCAACGGCGATGGCATTCAGGCCAAGGCCAAGGTGAGCGAGGTGACGCGTAACCTCATAGGTTCCGACATCTACGTGAGTGAATCGTATTATGGCAAGCTGTTCGGTTCAGGGTCCGGAATGTCCGATTCTCCAGAATCGGACAAATCGGATTCCGGCGGCTCCTTGACCTGGAACGCCGTATACGCCAAGCTCACCGGATCCGACGATGCGCAGATCGCATACGCCAACACCCTCGAAAAGGATGATTCGGTGATGAAGACGGTGTGCTGCGCGGACATGGCCGCCAGCTTCAAATTTGACCTCATGGGCGCGGTGGTCGCCTTGATCGTTGCGCTTGCGGGCGGTCTGGCGCTTGTAGTGCTGTTCACGCTTGCCAATACGAATGTGTCGGAACG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTGGAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 246080-245903 **** Predicted by CRISPRDetect 2.4 *** >NZ_WDPC01000004.1 Bifidobacterium dentium strain BIOML-A1 scaffold4_size365953, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 246079 24 100.0 27 ........................ CTCGGAGGCACATGCAGGCATCCTACA 246028 24 95.8 27 ...................A.... AACAGATACGCTCCGCTTCCCCACAGT 245977 24 100.0 27 ........................ TGCAAGGGCGTGTGCGGGTACCTTATG 245926 24 91.7 0 ...........GG........... | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTCCAGAATCGGACA # Left flank : CCTCAACCAACTGTTCGCTGGCCTCGGCGCCGACGTCAGCAAGTAGCAGGGTGTCTTCGACATCCTCCCAATCGGACTCGGAAAGATGGTCCTTGGCGAGGATGTTGAACAATACCTTGCCAAAAGGATTGCCTGACTTGGCCAGCTTGGCCTTGAGACGCTGAATGCGCGAGCCCGTGGACTCCGGGGTTTCCACTGCCGGCGCGGCCTTCGCCTCTTCCGTCGAGGCGATCGGAGGGACTTCGGCCGCTACTTCCTGGACTTCCTCGGCTTCTTGGGCCGTCTCAGCTTTCTGGACTTCTTGGGCAAGACGCTTATCAGCCTTGGCCTTGGCATCCTCAACGGACTTGTCTACGGCTTTCTTGCGCGACTTGCCGAACCACCAACCACCAAGCAGCAACAGCGCTGCAATCACAACAATGGCGACAATCGCGATAATCACATTGGTATCCATAATCCCAGCCTAAAAACCGCAACGGACACATCGCCCCATCCTCACC # Right flank : CTCGGAGGAGCTCATCCACGGGGCGTGAAAAACTGGACAGCATGGCCAGTACATCCAGGATGACGTCATTTCAAAGACGTGAGCAGCTCATCGAAATCGGTCGGTCGCTGTTCGCGTCGAAGGGGTTCGAAGCGGTAAGCGTAGAGGAGATTGCCGCGACCGCGAAGGTATCGAAGCCCATCGTCTATGAACATTTCGGCGGCAAGGAAGGCCTGTACGCCGTAGTGGTGGACCGTGAGATGCGCGCACTCACCGACACACTCGTCAACGCGCTGTCCGACCAACAGGCGCACCCTCGTCAAATCGTGGAACGTGCCGCACTGGCCCTGCTCACCTATGTGGAGGAGAACGCCAAAGGATTTCGCGTGCTCACCCGAGATTCGCCGAAAACCGATCCGGCCGGATCGTTCAGCTCACTGCTCGGCGATATCAGCATTCGCGTGGAAGACCTGCTCACCGAATCGTTCAAACGCCAGCATCTGCCCGCCAAGGGCGTGCCA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTCCAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //