Array 1 30157-31204 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOII01000036.1 Escherichia coli strain 640 BN4_640_1_(paired)_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30157 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 30218 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 30279 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 30340 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 30401 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 30462 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 30523 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 30584 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 30645 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [30669] Deletion [30686] 30687 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 30748 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 30809 29 96.6 32 .......T..................... TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 30870 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 30932 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 30993 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 31054 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 31115 29 100.0 32 ............................. GAGCCTGACAAGACTACTGAGGCCGTTCTGTC 31176 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATTGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTAATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56754-58002 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOII01000036.1 Escherichia coli strain 640 BN4_640_1_(paired)_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56754 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 56815 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 56876 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 56937 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 56998 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 57059 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 57120 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 57181 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 57242 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 57303 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 57364 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 57425 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 57486 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 57547 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 57608 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 57669 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 57730 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 57791 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 57852 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 57913 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 57974 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGATTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //