Array 1 179-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAUD01000152.1 Providencia stuartii strain M97 NODE_162_length_344_cov_1.34948, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178 29 100.0 32 ............................. GCTGATGGTCTGGGAGTGTCCATCGGGCAACT 117 29 100.0 32 ............................. GAAGTAGGCCTGACAGTGATTGAACGCATACT 56 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAC # Right flank : GAGTTGGGGCGGCGCAATAACGAGACGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.20,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 103799-103352 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAUD01000015.1 Providencia stuartii strain M97 NODE_15_length_116580_cov_37.7692, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 103798 28 100.0 32 ............................ CATCGAGTAAATGACCAGATGCTTATTTCTCT 103738 28 100.0 32 ............................ GAAACGGAACGCGCTCGCGCGCCAATCAACAC 103678 28 100.0 32 ............................ TTTGTAAGCTGGCGAGGAATCAACCTATTTTT 103618 28 100.0 32 ............................ ATCAGAAAGGAACTCTAATCGAGCCTTTAACG 103558 28 100.0 32 ............................ GTAGGCGAAAATGATTACTGGGTACGCAACTA 103498 28 100.0 32 ............................ TAAATCAGCGTAAAGCTCAGTTTCTTCAGGTG 103438 28 100.0 32 ............................ AGAATGACCCCGTGAGCGGTGAAGATGCGATT 103378 27 89.3 0 ..........A....A........-... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGGTCAGATTATAGTGCGGTCTTTTTCTTTATCTACACAAGGCTCTATTATGCCAAATATCACTATCGGCGCTATTGTCGATGGTGGTTGGCGATATTAATTACGGTGTTATCACAGGTGCTATTATTGGTGTCACAGTCGCTGTTATTGCTTCTAAAAATAATTGTAAGCACACTTGTTTTAGTTTCAAGCACTTTGTGAGCCCTCGTTATTTTCAGTCAACAAGTGGTATGCATCTGATATTGCCAGTAATGCTAGTTTTTCTCCTCAAGATCTTTTCATTTTTCTATTGAGTCACTATTGCAAATTCTCTTATTTTCAAATTTTGATTGTTAGCCTTCACGCACCTATGGGCTTATGATTTTTTACCTTTTATTTTTTAAGATAAAAAAATAGTGTTTTAAAACAATAAGTTAAATAAACGATAATAAAATAAGGTATTTTGGGCTATTTTGAGATAACTTATTGTTATCGAAATTATTTTTTATGGTAGTCTATAG # Right flank : TTTTTTAATACTACAACTCAAAATAGTCGTAAGTTGTAATTTCATATTTATTATCGTAGGGATCGGTGAAGTAGACTGATAAAGAGACCTCGTGGTCGATAACTGAAATTGGAACATTACAACTTGTTAGATGCTCTTTGAACTGCAAGAAGCTGGTTCTATCAACACTAAATGCTACTGTGTTTCCTCTATTTTGCGTTGTTCTTTTAAATAGAGATAAATAAGCATCACCATTGTTGATTACTAAAGGGCCGCCTTGCTCAAACCAAAATTTAAAACGTGGGGTTATTTCAAAAGAGAGTATATTTTTATACCACTGAATGGCCTCATCAAGGTCATCAACATAAATATGAACATGGTCAATTGCTATAAATCTCATGGTTTTCTCCTCTTATAAAAGACCTAACGTACTACTTTTTATCTGTAATTTATAAGCTACAATGGCTTTATCCGTATAATTGCATTCTCATATTGCTGAAAAACAATACAGGTTATTATGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 116062-115493 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAUD01000015.1 Providencia stuartii strain M97 NODE_15_length_116580_cov_37.7692, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 116061 28 100.0 32 ............................ ATTCACACCGACGTTAGACAACGTTTTATGCC 116001 28 100.0 32 ............................ ATATCAACCAGAGCCGAAACCCCAAAAGAGGT 115941 28 100.0 32 ............................ TCATCAGCCGCTTCAATCACCGCTTTTTTAAT 115881 28 100.0 32 ............................ CAAGTCAAAAGAGCTACGCAATAAATTAGCCA 115821 28 100.0 32 ............................ GCCAAGGTGCCGCCAATCTGCCGCCACTTTTG 115761 28 100.0 33 ............................ CTGTTCAGGCTGTGATGGAGCTTGATAAATCGC 115700 28 100.0 32 ............................ GACCCGACCCATTGTCTACATTTTTCAATGTT 115640 28 100.0 32 ............................ ATCTTGTAGGGTTTGCCGAATTATCGGTTTAT 115580 28 100.0 32 ............................ TAAATTAATTCCAGCATTCGAAGGTAACTATC 115520 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AACCGCGTTGAATAACAACGGGTTAGGGAAAGAAAAAGCCACCTAATAGGTGGCTTTTTTGCATCTGGAATTTGTCACTGAAAATCGAAAGTGGCAGCAAAGTGGCAGCACTGTTCATCATTACAGTATTCAAGCTTCATCATTCTTTCATATATCAAATCTGAATGTGAATTTTACATTCAAAGTTTTTATTTATTATTTTTTATTCAGTGACAACTGACGCACTCTTTACTTGCTATCAAATTAAAATATGAGTCCAATATTTTTATGAACTAACAATTTGCTTTTTCTATTGAGCTGCTACTTTGATCCTCTCATTTTCAAACTTTGATTATTACCCTTCATGCACCTATGGTCTTATGAGTTTTTACCTTCTATATTTTAAGATACAAAATAGTTATTTAAAACAATAAGTTAAACAAGTGATAATAAAATAAGGTATTTTCGACTATTTTGAGATAACTTATTGTTATCGAAATTATTTTTTATGGTAGTCTATA # Right flank : GTAATGTTGAATGACTCGATAGTTTTTGGCTAAGTATGGACTAAGATTGGATTTATTTCAGCACGTTCGGTTTGTGAGGCTATCCATAAATCATATTGGGCTTGTATTCCTATCCACATTTCAGCACTAGTACCTAATTGCCGCTTCTAAACGAAGAGCCATATCAGCAGAGATCCCACTATTACCGTTAAGTATACGAGATAATGTTGTACGAGTAGCGCCTAATGAGAGTGAGTTGGTAGTCACAGAAACACCTTCTAAATATTCACGAAGAACTAGTCCGAGGTGCGCAAGGTTATGCATTCTATTCATATAATTACCTCAATGTTGCAATGAGGGCATTGAAGATTGTAAGAGGCATCTAATTGCACTGAAATTCACGGTTGTAGATAAGTAAATACTGATAAACCTATAAAATCCAGCCATAGAGCTGGTTTTTTTGCTTTATAAAGCAAGTAAAGTTTGCTGCCACCTTTGTACAGAGTTACATGTGTACTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 74528-75697 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAUD01000017.1 Providencia stuartii strain M97 NODE_17_length_109030_cov_44.1794, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 74528 28 100.0 32 ............................ ACGAAAAAATCAAGGCGAAATGGTACAAATTT 74588 28 100.0 32 ............................ TTTCGGAAAGTAATCCAATCTAACCAAACTTC 74648 28 100.0 32 ............................ AATTTCTGGAACTATAATCGGAGTAAGTATCC 74708 28 100.0 32 ............................ TTGCCGTAACACTTCCATCACTCATAATCGGC 74768 28 100.0 32 ............................ AATCACACTTGCTTCGATTTGGTTATTGACCA 74828 28 100.0 32 ............................ GCATCATGATGGTACGCCGCACTGGCATATGT 74888 28 100.0 32 ............................ TGCTCAACGATTTGCATTGCTGCACTGGGTAT 74948 28 100.0 32 ............................ TAGATGAAGGGAAGCAGCGTATTGAACAGCTT 75008 28 100.0 32 ............................ TCACTAGTTCAAGCGAGATTTCAAATTACCTT 75068 28 100.0 32 ............................ GCAAATGCTTTACGTTCTTCTATGGGGCGTTT 75128 28 100.0 32 ............................ ATACATTGCCTCAGCGACCGATATTAGTTTTT 75188 28 100.0 32 ............................ GGATAATTGGCAATACTGATGGCTCTAAAGGA 75248 28 100.0 32 ............................ CGTCTAGCTGAAAACTATATCGCTGATGATTT 75308 28 100.0 32 ............................ ATTAAACAAATTTAAGCTTGCTCCTGGTCTAA 75368 28 100.0 32 ............................ AGCTCAATTCCGTGAAGAGTTGGACAAAAGCA 75428 28 100.0 32 ............................ AAGGTTGAATAAGGCAATAGCACCCACGCAAA 75488 28 100.0 32 ............................ CCGCTACAACGCTGCTACAGTATGTTAATCAA 75548 28 100.0 33 ............................ TCCACGAAAATGCAAACTGCTGTCACTATTAAT 75609 28 100.0 32 ............................ GTATGCAGGTTTCGCTTCGGATAACGCATTCT 75669 28 89.3 0 .....................AC.T... | C [75695] ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGACCAAATTTCTAATATTGAGTCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTAGATTTTCTTGCAGATTCACGCAGTATCCAAAATAGCAAACGAGTCAGTGAATTGTTGGAAACAAATTGGACTGGTACGACATCAGATTATTATAAAGAGATGGCGATGTTCCAAGCTTCACAGGATATTTTTAAAGACTTAAATAGTATGTCGCTGTTTGGTGGTCGCTAAGTGATTTGCCAGCACTGATTGTTTGATAGAGGTGCTGGCTTAATTCGTTAGGGATAATCTATTTTTCTTTATTGGTTCAATAGCAGTAGATATTGTCTTTTTTGATATTCATTTTGATTCGTTATCCTTCTTAAATTACCTTCTATTTCTCCACATTAAAAATAATAAGTTAAAACAATAGGTTAAGATGCGCCTTATAAAATAAGGTATTTTTAACAATTTCGGGCTAGTTTCTTGTTATCTTAGATGTTTTCTATGATAGGCTATA # Right flank : ATCAATCTTAATGACAAACCAAGGTAATGACTTGCGTACCTTGTTGTTGCCAATACAATATCCATCTTTCGCCTTTTATGTGCCCAGCGAGATCATTTGTTAGCTCAAGCGTCAGTGTATTATGGGTAATGTTAATGATTTGTGAGCTAAAAAAATCAATACCTTGTTTTGCATCATAACAGAGTGCCTTGTATAAACTCTCTTTGGCACTAAACGCGAGGGTGATAGCGAGAGGAAAAGGCCAGCCAATCAAGCTTTGCCTTTCTGCATTATTAAGTACGACTTGCCAAATTCGCTTTGCTTCAGACTCATCAATAATGGTTTCTATATCGATGCCGACGCTTGTTATGGCCTTATCAATCGTAGCAATCGCAATTGCACAACAACAATTATGACTAATACTGCCTTTAATGCCTTTTGGCCACAAAGGCTCACCGTGTAAACCCATATCGATGACTTGGCCGCGACCCGTTAATGATTTAATAGCATAGGAAGCTGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 85840-86288 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAUD01000017.1 Providencia stuartii strain M97 NODE_17_length_109030_cov_44.1794, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 85840 28 100.0 33 ............................ TCACCAACTTAGAAACAAAACAAGAGTTTGCTT 85901 28 100.0 32 ............................ TCAGCCAAAAGGGCTATCAATGCGGCAAGATT 85961 28 100.0 32 ............................ ACCTTTTTACGTGACGATAAGCTGACGTATTT 86021 28 100.0 32 ............................ AATTTGGAAATGTGGCGATAGCCAGTATATTC 86081 28 100.0 32 ............................ CCAATAAAGCGGCAAAACGATTTGTCAGTTTG 86141 28 100.0 32 ............................ TTTGTTATTAACACGTTTTAGGCTTGAGCTAA 86201 28 100.0 33 ............................ TGTCACCGTAATCGACCACGTACCGCTTTTACT 86262 27 82.1 0 ..........A..-..........ATG. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAAGCAGCATTGAAAAGTTTAGCTTTAACGGTAGGTTTAGAACTGTCTAGTAGTGCGGTACGTTCTAATTTAGTCTCTCCAGGTTCAACGGATACCGATATGCAACGTATGCTGTGGGTGAGCCATGATGCAGTTAAACAGCGGGTTTCAGGCGCCGCAGATCAATTTAAATTAGGGATCCCCTTAGGGAAAATTGCTAAACCAGATGAAATTGCCAGCACCATTTTGTTTTTAGCTTCAGATGATGCAAGTCATATCACCTTGCAAGATATTGTGGTCGATGGAGGCTCAACATTGGGGGTATAGCCCCCAGTGTTGTATATCGATACACGATTTTATAATGTCTCTATTCCATCTTAATCTTGATTGACCTTGTGTTTTTTGTTATCAATTAATTACTAATAAAATCAATTGGTTATAATGATAAGGAAAAAGAAGGTGTTTTACGAAAAAATACAGTAATGAATTGTTGTCTAAGACATTTTATCTGGTAAGTTATA # Right flank : ATTGTTACCATCGAATGCTTATTTGTTTTATTAAAAAGCACATAGTAACCAATTGAAATTAGACAATCTGAATGCAATCAATGAGTTATTTTTATTCATCAACTCTGCGATCATCTTCCCAAAATTGCATAATAATGCATAACAGTAGGTTAATTGCTATAGACATTCCATAAGGTAAATTGTATTAACATAGTAATGTAACTTACCAATCTAATGGAAAGGCCAAATTTACATGGATGATTTTTCCCCTTCAGATCTAAAAACGATTCTGCATTCTAAACGTGCCAATATGTACTATCTAGAGCATTGTCGAGTGATGCAGAAAGATGGGCGCGTGCTCTATCTCACCGAAGCAAAAAATGAAAATCTTTATTTTAATATTCCAATCGCTAATACAACGGTTCTGATGCTAGGCACAGGAACATCGATAACACAAGCGGCGATGCGGATGTTATCTCAGGCAGGTGTGCTTGTTGGTTTTTGTGGTGGTGGGGGAACGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 95271-96078 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAUD01000017.1 Providencia stuartii strain M97 NODE_17_length_109030_cov_44.1794, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 95271 28 100.0 32 ............................ ATCCCAAGTAAACAATGCGCCATCATCTTGCA 95331 28 100.0 32 ............................ TTACCGGCGTTGTCCAAACCTGAAATCATGTC 95391 28 100.0 32 ............................ GTTCAAGATTTTTACGGGCAGCAACAGGAAAA 95451 28 100.0 32 ............................ GATTATTGGTCAATGGTCACAGACTAAATGGT 95511 28 100.0 32 ............................ TTTATAAGACTTAGTTCCTTTCATCGACAATA 95571 28 100.0 32 ............................ TTAACGCTGCTTCAAGCGCAGCATCGCCATTA 95631 28 100.0 32 ............................ ATTAGCCGAAGACGGCGAAGTCAAACCCCGCA 95691 28 100.0 32 ............................ CAATATACAAGTGGGAAAACGACGGCGCAGGC 95751 28 100.0 32 ............................ GACATCAGAGGTCGGCGCAGAGCCGAGTTTTG 95811 28 100.0 32 ............................ TTTCAGAAGCTATAGAGTTTAACCCGTTGCAA 95871 28 100.0 32 ............................ AAACAGTAGTAGTATCTGCACCAGCAGTCATG 95931 28 100.0 32 ............................ TATCCTGCCATCAGTATTAATTTGCATTTGTG 95991 28 96.4 32 .........................G.. CATGAACAAGTTTTCTCAATTGCCCGCTCTTC 96051 28 85.7 0 C......A.....T...T.......... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCAATTCAACTGGTGCCTGAATACGCTACGGCGGTTAGCTATGTACGCCAACATGTAAAGGGTGAAAAACGGATCCAGTTGGATATGCAAAAAAAGGCGCGACTATATGCAACTAAATCCGGTTTGTCGGTTGAGGCTTGCTTGGCACAGCTGAAGGAGAAACAGCCGAAAGCACAGAGCCGTTTGCCGTTTTTATGGGTTGAAAGTCAGCAAACTAAATCACGGAATGAAGCAAGTGGGCACCGTCCGTTTCCACTGTTTATTAAATGCCTTTCAGCCGAAAAGCCCCAAACAGGTTTGTTTAATTGCTATGGATTAAGTCAAGCAGTTACTGGCGATATAAAATTAGCAACAGTTCCACATTTTTGACCTTGTTTTTTTGCTATTTTAAAATTTTATATTAAAACAATGAGTTACAATAAGTAGAGAAAAAGAAGGTATTTTTGTAGAAATACGCTTAACGACTTGTTGTAACTTATTTTTTATTTGATAAAGTCTA # Right flank : AATCTGTGACCTACGGCTTAGAAGGCCGTTGTGCTATGTTTACTGACATATATGTAGTTAGATATAACTTGAGAGCGAAAGTGTTAGAGTTTAATTAATTTTCTGGGGTCCGATGGACTAAAAAAGTGATTGAAAGGATACTGTTGATTTAGATGTAAAGAAAAATAGAAAGACATTACAAATTTTAATTGTTTGAAAATTTGTAATTTTTAATGCATTCCTTTAACTTTTTACTATGTATTGTGGTAATCACATATGCCTAATTTTAATGTTTTTTATAAACTAAAAATACTCACTGCCATCTAGGTAGCTTAGAAAAGGTTATTTTATTGTTGATTAAGCATTTACTGCCATATAGGCAGCGTTTAAAACGTTATTTCTAATTAAAGTATTACAGATTTTCTGTGTTTTATCTCTATACATAATTTTTTGTGGATAATTGCCAGATTATTTTAGTGTTGTTTAAATGTGATTATATAAAGGAACAATTATATTGCTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //