Array 1 128676-129048 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019827.1 Leptotrichia shahii strain JCM16776 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 128676 36 100.0 31 .................................... TAGATTGCTGTTCTACCAAGTAATCCATATT 128743 36 100.0 31 .................................... TAGATTGCTGTTCTACCAAGTAATCCATATT 128810 36 97.2 31 .....................A.............. TGATAACTAAAGGGGAAAAGGTAAAAATGAG 128877 36 100.0 32 .................................... GACAAATCTATCTGAATAAACTCTTCTTTTTC 128945 36 100.0 32 .................................... TCTAAAGAATTATCTATTCTGTCTTTTAAATT 129013 35 80.6 0 ........................A.T..-..TTTA | A [129035] ========== ====== ====== ====== ==================================== ================================ ================== 6 36 96.3 32 GATATAGACCACCCCAATATCGAAGGGGACTAAAAC # Left flank : AAAGATGAAGAAGTGATAATTCCGACATTGAGCGTGATGGACTATGAGTATTGAGTATTTTGGTCTGCTTATGTATGATTTTCCTATGCAGACAGATGTTGAGAGATTTGAATATAGGACTTTTAGGAAAAAATTGATAGAAAAGGGATATTATCAGCTTCAAAAATCGGTATATATAATGAGGTCGAAAACAAAAGAAAAAATCGAACTGGCAGAAAAACAGTTATCAATGCTCGCTCCAGAAAATTCATCAATCCGTTCCATTATCCTGACAGAAGATCAGTTTCAAAAAATGAAGGTACTTGCAGGAGAAGTGACAATGGGAGAAAAAATTTCACAAAACAAAATATTGGAATTTTGAAAAATCAAAAAATATGGTATAATAGTATAGGGTGGTTCTATATTATTAATAAAGAGAAAAATAGGATTGAAAGTATTGAAAATAAAGACAAAATAGAAAAATTAGAAATAAATATCTCATCAGCAAGAAATTAGGATGG # Right flank : AATAAAAATAACTTCTGAGTGAGAATAAAATTTCAATTCTTGCTCATTTTTTATTGTTTTTTGAATATGGTTGCTTGGTTGTTCTGAAACGAAAATTTTTGGAGATGTTTTAAATTTTTAGGTTGAAAAAAAATAAGAATTATACTATAATAAATAATTATGCGATTAGGCTAACTAGAGCCTAATTTTATTTGAAAAAGATAGAAAGAAGGAATTGAAATGATAGAAATGATTTTGCCTGATGGTAGTAAAAGACAGTTGGAAAATCCGATGACTGTTGTGGAGTTTGCAAAAAGTATTGGGAGCAGTCTTGGGAAGGCAACCGTTGGGGCGGTAATTGACGGTGTGCAAGTTGACTCATCTTATGTTATTGATAAATCTGGAGAAATTGAAATAATTACTAATACAAGTGAAAAGGGAATTGAAATTATAAGACATAGTGCGGCTCACATAATGGCTCAAGCTGTGCAAAGATTATTCCCAAATACAAAAGTTACAAT # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCACCCCAATATCGAAGGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 184082-184331 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019827.1 Leptotrichia shahii strain JCM16776 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================== ================== 184082 31 100.0 43 ............................... GAGTTATAAGTTTCCTGATCAACAATAAATTTCATAGGTTAAA 184156 31 96.8 46 ......C........................ GAATCGGTCATATTCCCGACATTATAATGTCTATTGTTGTGTTAAA 184233 31 96.8 38 ............C.................. CCACAATCGATCAATATTAAATTTTCTTCATCGTTAAA 184302 30 90.3 0 .............C....C.......-.... | ========== ====== ====== ====== =============================== ============================================== ================== 4 31 96.0 43 GTAGAGTATCCATTAAAATAAGGATTGAAAC # Left flank : GTTGCTCAAAATATTAAAAAAGGAACTGAAGAAGTTTTTGAAAAAACAGTAGAAGGAGCAAAAGATTTAGCTGAAAAAGCAGCAAATAACAAAATTGTTAAAGATGTGGAAAAAGGTGCTGAAAAAGCAGTAGATAAGACAGTAGAAGGAGCTAAGGGATTAGCAGATAAAGTTACTGGAATGTTTAAAAAATAGTGAAAACAAAAACTTAATACAAAAAGTTAGTTGGAGTATCATTTTTGGTACTCCATTTTTAAAAAAAATTTTGAAAAATCAAAAAAATGTGGTATAATAAGTTTGTGGTAAAAATTCCTACCACTACCAATAATAGAAAAATTAGAGAAAAATCTATTGAAAGCCAGTAAAAATGGAGGCTAGAAGTTACGGAAAATACCAAAAAAACAGCAAAAAATAACAAAAATTAATCAAAAAAATGCGATTTTAATGTCTGAAAAAATCTCTGTAACACCGATAAATAAAGAATTTTCTCAAAAGTACGG # Right flank : CTATTCGTTAAAAATAACAACTTTTACATAAGGTTGTTTTTTTTATTTGTAAAAAAAGATTTAAATACTTTAATCCATCAAATTTTTAAAATGTTTTGTTATTTTTGGGAAAATTTGATATAATTTATGCAATAGGAATTGGATCTTGGGTGATGAATTTGAGTAATGAATAAAAAATATTATGTAAAGTCAAATTTGGAAAGGAAATTTTGTGAAAAAATTAAAAGACTATTATGACAGATTCAAGAGTTTGAATCCGCAGTATTCGGGAATAAAATTGGGGATTATTGTTGCAGTTATTGTTTATTTTATTGCAAGAATTTTTTTTGTGGTGGAAATTTCAAGGGATATGATAATTTCACTTGTAGTTTTTGTAATATCAATGACTTTTCACGAGGTGGCACATGGATATGTGGCTTATAAATTTGGGGATAATACGGCAAAAATGAATGGGAGAATAACTCTGAATCCTTTAAGGCACATTGACTTGACAGGAATAC # Questionable array : NO Score: 8.35 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAGTATCCATTAAAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 3 994413-994977 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019827.1 Leptotrichia shahii strain JCM16776 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 994413 37 100.0 37 ..................................... AATACAACACCAATGTCACTATCCGTAGGAATATTAG 994487 37 100.0 40 ..................................... CTTGTTTCCTCCAGGGTTTGGTAAGACCTTCACAAAGAAG 994564 37 100.0 41 ..................................... TCCTATAAAATTTAGGTTTATGCTTTCGCCTATAATAAGAA 994642 37 100.0 37 ..................................... TGGTGAAAATGTACTTTTATACATAGTATCTAAATCT 994716 37 100.0 35 ..................................... ATATCAATATATTTTCTAACTGCTAACCATAATTG 994788 37 100.0 40 ..................................... GAATTAACCACTACATCATAATGTGCTTTTGGTACATATT 994865 37 100.0 39 ..................................... CCCCCTGGTCCGAAATTCGCAACAGTGTTTTTCTTTAAA 994941 37 89.2 0 ........................T....G..A...A | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 98.7 39 GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Left flank : ATTATCATGGCTATAATTGTAAAAAAAGGTGAATTAGCAAAAATAAATAAAGGAATGTCACAAAAAGGGTTGGTTGAAAGATGTACTTATACAGTAAAAGAATTTCCAAAAAGCAATCTTTCAAAAAAGGCTGAAGAAGCCTTGAATAAAATATTTTCATCTATGAAGTAAAATTAATGGAAGTAGATTTGAAGAAGGATACTAAATTACAAAATTTGTTTTTTGGTATCTTTTTATTTATGATAATAATTTTTAAAAAAAAATTTTGAAAAATCAAAAAAATGTGGTACAATAAGTTTGTAGTAAAAATTCCTACCACTACTAAAAATTAAAAAAGCAGAGAAAAACCTATCCAAAGCCAATAAACATGCACGTTAGGAGTTACGGAAAATATCAAAAAGACAGCAAAAAATGATAAAAATTAAGCCAAAAAATACGATTTTAATGTCTGAAAAAATCTCTGTAACACTTATAAATAAAGGATTTTCTCAAAAGTACGG # Right flank : AACAACAACTTTTGTATAAGGTTATTTTTTTTGTTATAAAAAAAATAGGGGGTTGAAAAAAAAGTAAAAATGTGTTATTATAATTATAGAAAATAATTTTAGGTAGAGAGTGGGTTAGCCCACTCTTTAGTTTTAGATATGAGGTGTAATTTTATGGAACAGATTTTAAATGAGTTTGAGAAGAAAATCGAATCGCATTTAAAGGAAATGAATCTGGAGTTGGCAGATTTGGAATATGTGAGGGATGGGGGATATAATTATTTGAGAGTGTATGTGGAGAAAATGGATGGGACTACGACACTTGATGATTGTATTGATTTTAGCCGTGAGATTGATGGAATTGCGGATGAATTGATCGAAGAGAAGTTTTTTCTGGAGGTTTCGACGCCTGGGGTTGAGCGTAGATTGAAAAAACCTAAGGATTTTGTGAGATTCTTGGGAGAGAGAATTAACGTTCAGGCTAAGAGCAATATTGAAGGGACAAAGAAATTTATAGGAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 4 1200564-1199690 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019827.1 Leptotrichia shahii strain JCM16776 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1200563 29 100.0 36 ............................. ATTTTTGATGAAAATATTGGAAGAGCCTTTAATGAG 1200498 29 100.0 36 ............................. TTTTCATTAACTATTATATTATCTTGATTTTTATTA 1200433 29 100.0 36 ............................. AATTGTCGACTGTATATGTCGCAGTCGTATGCAACA 1200368 29 100.0 36 ............................. AATTAACAACACTTCCAGTTCCGTTTGGGTTTTTCA 1200303 29 100.0 36 ............................. GAATAAATCCTATTCCATAATACTCATTATTATCCG 1200238 29 100.0 37 ............................. GTCCTTTTATGCTGAATGAACCTCCAGCATTTTTCAA 1200172 29 100.0 37 ............................. TCAAATCCAAGAATAAAGCGATTGTACATTAATCCAA 1200106 29 100.0 36 ............................. TTCTATATTTTATTTTTATTGTTATTGTTAGATATA 1200041 29 100.0 37 ............................. ATCTTCCCCATTGCTCATCATAATTGTGTTTTTTTCA 1199975 29 100.0 36 ............................. TTATTATAAACGTTTTGTACTGTTAAGTTTTTCATT 1199910 29 100.0 37 ............................. TATCTAGCAGTCTATGTAGTTGTTGTTCTGCCTGCTG 1199844 29 100.0 32 ............................. CATCCTTTATTTTTTTATAATTTTATATTTTT 1199783 29 100.0 36 ............................. GTTTTTCATTTATAACAATATATTTTCTTTTTAATA 1199718 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 99.8 36 ATTTAATAGGAACATTTTGTATTGTAAAT # Left flank : GAAGGATTCAAAATATGGTGGTAATATGTATATAATTTTAGTTTATGATATTCTTTCTGATGAAAATGGAGCCAGAATTTCCAGAAATATATTTAAAATTTGTAAAAAATATTTAACAAATGTTCAGAAATCAGTATTTGAAGGCGAAATAACACCAGTATTATTAAAAAAATTAAATATAGAACTAGGAAAATTTATTCGCAAAGATAAGGACTCCCTAATAATTTTTAAATCTCGTCAAGAAAAATGGCTAGAAAAAGAATTTTGGGGAATCGAAGATGATAAAACTTCAAACTTCTTTTAAACAAAATCTGTCGACCTGTAATAACACTAAAAAGCCGGGACGTCGACAGATTTTCAGTAATATTGATTTTTATTGAGTTTTTTGACTGTTATATAAAAAAATAAAAAGGAATTTTTGGTAAAAATATATAAAAATATTGGTATCGACAAAAACAGAAAAAAATGGTATACTATTTAGGTAGGTTAGAGATAGTAAG # Right flank : ATCGATATCATATCACTTTGTTTAAAAAATGAAAAACTGGTATTGACAAATTTAAAGTGTGGGTTATACTAATATTAATACAAGAAAGGAATTCTAAAAATGAGATTTGGAAATACAAAAATAAATTTTAAGTTTAGAATTGGTTGGAAAGAAGCAACTAGAAAAGAAAAGTTTTATGGGATTTTAACTTGGATTGTAATTTTAATTGTAGTGATATATTTTTTTAATAGATAGTTGTAAATTAATAAAAAAAAGGGTGAATAAAATATGAGATTTAGAATTAATATTGAATTAATTGAAGGAAACACATTTCCAGTTAATTTTAGGGTTAAAATTTTGCATATGTTGAAAGTTGGGTTGAAAGAATATGATAGGGAGATTTTTGAAGAACTTTTTGATTCAGCAAAGCAAAAAAATTATACTTGGGCTGTTTATTTTCATGCGATTAAGTTTGAGAAAGAACGAATTTTATTTTTAAATGAGAATGATAAAAGATTTAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAATAGGAACATTTTGTATTGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 1203670-1205778 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019827.1 Leptotrichia shahii strain JCM16776 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 1203670 28 100.0 37 ............................ TTTATTTTTTATAATTCATAATTCATATAGTCTAAAA 1203735 28 100.0 38 ............................ TATTTGATAAAAAAGTAGCTAAAAACGTGTATGATTTA 1203801 28 100.0 37 ............................ TATCTCATCTCCAAACTGCTTTAATAACACGTGTATC 1203866 28 100.0 38 ............................ TGAATCTTTTACAACGGCTGGAAGTAAAGGAGCTTATG 1203932 28 100.0 36 ............................ TCTTTGAGTATCGTTATCTGCTGTTTCTTCTTCGAT 1203996 28 100.0 38 ............................ TCTTCAGAAGTTCGTTGTCTTCTTGTTGCAACTCTTTT 1204062 28 100.0 36 ............................ TCTTGATTCTAAAAACATCAAAAGAAAATATATTGT 1204126 28 100.0 36 ............................ TCTTCTCTAAGTTCATTTCAGGATCGTAAAATCTCA 1204190 28 96.4 37 T........................... TCAAATTACCGCCGCTATTCCAACGTCTGCAATATCT 1204255 28 100.0 38 ............................ TGCTTTACAGTTTTACCAGTTCCAAGCGTTTTCATCAT 1204321 28 96.4 38 T........................... TGCACTTGGCTCTATAATCCTTGAGAATTCCTTTATAA 1204387 28 100.0 35 ............................ TTTGCTTGTTCCACTCTCTGTATCAACTGTTTTTG 1204450 28 96.4 37 C........................... TACATATCTTTTTCAAAATTTTCTTTTTCGCCTTCTC 1204515 28 100.0 36 ............................ TTTACCATTATCTCTAACAGTACCTCTTATATCATT 1204579 28 96.4 36 C........................... TATGCTCCCAAAATCGATATTAGAAAATAATGTCAT 1204643 28 100.0 37 ............................ TCGATCAACATATGTTTGAAATGGCATATTATCCTTT 1204708 28 100.0 36 ............................ TCCGCGTGATGGTCCGGCACTTTATCCGAAGCAACA 1204772 28 100.0 35 ............................ TAACGAATGTTAAATCAAAGCAAATGACTTGGGAA 1204835 28 85.7 37 ..GGG.G..................... TAACGAATGGTTTTTGCATAAGAATGAAGGTATTTAT TA [1204842] 1204902 28 100.0 36 ............................ TGTTACTGGATCAAAATCCATTTTTGAATATTTTGA 1204966 28 96.4 38 C........................... CGCCTATTAAGACTTTTCCATCCCTCTGGAGTTGTAGA 1205032 28 100.0 37 ............................ CCTTAATAAGGAGGATAAAAATGAGTTTTAGTGAAGC 1205097 28 100.0 38 ............................ GATGGCAACGTAATAATTTAATTGTTTTTTTGCCGTTG 1205163 28 100.0 38 ............................ GTATCTTCTACATAACTATCATAAAAATTACTACAATC 1205229 28 100.0 39 ............................ GGTCAAATTATACAAATATTTAAAAGATATGGAATTAAG 1205296 28 100.0 36 ............................ GCAGTAATGCACCCAAGACAATTAATACTGATAAAA 1205360 28 100.0 37 ............................ GAATGATAACATACAATTATTAGTGTCTAAATTACAA 1205425 28 100.0 38 ............................ GACAAATAAATTTATATTTCCAGCTGTTATAAATCCAA 1205491 28 100.0 37 ............................ GTATAAATAAAAATATGTATAAATAAGGAGAATAGAA 1205556 28 100.0 38 ............................ GCAATATGATAAAGATAATTATAAGATAAATATATTCG 1205622 28 100.0 35 ............................ GGTCAGAATATCCAATTTTCTTTCGTATATCTTTC 1205685 28 100.0 38 ............................ TAAGACATCGGTTGTGGACAAGGAAAAATCAGATAAGG 1205751 28 96.4 0 ..................A......... | ========== ====== ====== ====== ============================ ======================================= ================== 33 28 98.9 37 ATTTAATAGGAACATTTTGTATTGTAAA # Left flank : ATGATTCATTAAATTTTTTATTATTTTTCTATCATTTTAATTATACCTCAATTTATAATTTTTCAAAATTTAAAATATTATTCTAAATTTTTTATTAAAACGAAAACTTCTCTTAAATTTTTAAACTTTTTTATCAATCACTTTAGGAACTAATACAAAAAATATCACTATCAAATATTATCAAAAAATGAAAATTCATTTTGAAAGAAAAAGACTTCTTAATAACTTTTAAATCTTATAAAGAAAAATGGCTAGAAAAAGAATTTTGGGGAATCGAAGATGATAAAACTTCAAACTTCTTTTAAACAAAATCTGTCGACCTGTAATAACACTAAAAAGCCGGGACATCGACAGATTTTCGGTAATATTGATTTTTATTGGATTTTTTGACTGTTTTATAAAAAAATAAAAAGAAATTTTTGGTAAAAATATATGAAAATATTGGTATCGACAAAAATGAGAAAAAGTGGTATACTATATAAGTAGTTTGGGGAGGATAA # Right flank : ATACATTACAACAGGAACATTGGAGCATTTGAAGTGTTAAAATATAAAAAAGCTAAAGTTGAACTTTTAATATTTGATATTGGATATAATTTAAGAAAATATATTCATAAAAAAAGACAAGAAGATATAAAACTTCATAAATTAACTAAAAACTAAGTTTTAAGAGAAATAAAGTTTTTTAATTTTTCTTTGATCAAAAAAAAATTGTAATCAAAGAACTATAAAAAATTAGTGAGTGTTTAATTTAGGCAAAAAAATAGAAGCTAAACTCAAAATTTTAATCATTTTGAGATAACTTCTTATACTAATATTAATTCTTAAATTTAAGTATTTAACCTTCTAATAATCTGTATATATTATTATTCCTGTAACATCTCATCAAAAATTTCTTTTAAATCAATACTTTCAATAATAGATCGAAGAATTAATTTTTCTAGTTCTTCTGAAAAAATAACTTTAATATTTTCTTTTTTACATTCTTCAATTAATTTTGGATTTTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAATAGGAACATTTTGTATTGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 6 1402023-1401617 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019827.1 Leptotrichia shahii strain JCM16776 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1402022 37 100.0 40 ..................................... GGTGTCCATATTTCTATTCTTCCTTTTAATTTATCTATAG 1401945 37 100.0 36 ..................................... TTCATTTCTCTCTCCTATATAAACTGGCACGTTGTT 1401872 37 100.0 35 ..................................... CATATTCTATTTTTTCGAAGTAAATTTCTACGTAT 1401800 37 100.0 36 ..................................... TTTCTTACAGATGGGTCTACGGGATCTGAAATTGGA 1401727 37 100.0 37 ..................................... AAGTTATCTTATGTTTACTTTGATTTGATTTTAAAAG 1401653 37 94.6 0 ........................T...........A | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 99.1 37 GTTAAAGTAGAGTATCCATTAAAACAAGGATTGAAAC # Left flank : ATATGGATTTAGAAGAAATACTAGTAGTTATTGCAGTGATTACTGGAGGATTAACTGGATTTTTGCTGGTAAAGTTTATTCAGAAAAAATTAAAAGATAAAAATGAAAACAGATAGAAATTGGAAGTGTGATACTAAATTTTATTTAAAAACTAAAATATTTTTAATAATAAGGGGCTTGTCCCCTTGCTGAAAAAATTCATAACAAATACACTATCCAACTGAACGGCAATAGAAGTTATTTATACAAAAAATCAAAAAAAATTTTGAAAAATTAGAAAAATATGGTAAAATAAGACTGTGGAAAAAATTCCTACCACTATAAGAAATGAAAAATAAGAAGAAAAATCCACTCAAAGCCAATAAAAATGAGCATTAGGAGTTACGGAAAATGATAAAAAAACAGCAAAAAATAATAAAAATTAAGCAAAAAAATGTGATTTTAATGTCTGAAAAAATCGCTGTAATACTAATAAATAAAGGATTTTCTCAAAAGACGGG # Right flank : TAATATTTAAAAACAACTTTTTATAAAGTTGTTTTTTTTTGATTACTGTCAAATATGAAAAAAAAAGCAAAAAAAATAGAGAGTCAATACAAATTTTGTATATTCTCTCTATTTTATTTATCATAAATTGTATAATTTCAAAAAAGTTTACAAACTATCTTGAGTAAACTTTTGTTAATTTAGCAATTCTTTCTGCCAATTCATCTGTCAATACACCATCTTTTAATCTCCATTGCCAGTTTCCGCTAGCAAGTCCAGGAGTATTGATTCTAGCTTCGCTTCCTAATCCTAAAAAATCTTGAATTGGAGCGATTGCCATGTTTGCAACAGAGCTCCATGCACCTCTTATTGCATCCCAATGGATTTCATTATCCGATCTTGAATTTAAATAGTTTCTTGCAAATTGTTTATCGTCTTCATTGGCTTTTGTAAACCATCCAATTAATGTGTCGTTATCATGAGTTCCTGTATAAACTACACAATTTTTGGTATAAGTATGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAGAGTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //