Array 1 866727-860520 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019515.1 Xanthomonas oryzae pv. oryzae strain SK2-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 866726 31 100.0 36 ............................... TGGCCCATGGGGTACGTATGTGGGTACTGCGCGCAA 866659 31 100.0 36 ............................... CCCGTTTCGGGACCATGCCGTGGACTGCACCGGTGT 866592 31 100.0 35 ............................... TGCTCAGTACCGTGCCCGCAAGGCTTTGCGTCTAC 866526 31 100.0 34 ............................... TGAGCTAAGGCATTGTCTGAACTGAATTTTCCTC 866461 31 100.0 36 ............................... AAGAACAAGACCGCTGCCCTCGCCGCAGTTGGCTCG 866394 31 100.0 34 ............................... GGAATCTCATGCACGAGCTCCGCTCAGCTCTGAT 866329 31 100.0 34 ............................... ACAGATGATCCCACAACTGGATCAGGTCTACCCA 866264 31 100.0 35 ............................... CAGCACCATCACGAACAAGTCGCCCACGAAATCGA 866198 31 100.0 33 ............................... CCAAGCTGCAAGGTTGCCCTTCTGACATTCCCG 866134 31 100.0 35 ............................... TACATTTATTTTCCTAGCTGAAAAAGAATGTGGCG 866068 31 100.0 34 ............................... TTGGGCGATGTTGAGCACAAGACCAGCAAGGCAG 866003 31 100.0 35 ............................... ATTGTCTCTTGGTTGGGTTAGAAGTTGTATGGCCG 865937 31 100.0 36 ............................... GTGACATTGGTCGACCCATCAGCACCAGATCCGCAG 865870 31 100.0 35 ............................... TTGGCCACAATGGCATAGATATCACTAGGCAGATC 865804 31 100.0 34 ............................... ATCGTATCCTTCGCGTACTGGATCACGTCGGCCG 865739 31 100.0 36 ............................... ATCGACCAAGGCGACAGCGCCATCGGGCAAAAAATT 865672 31 100.0 34 ............................... CAACAACGCGTAGATCAAGTGACAGAGTTGGCTT 865607 31 100.0 35 ............................... AATATCAAGCTCGTAATCACCAGGCTGATACGGAA 865541 31 100.0 34 ............................... ACGCCCTTACGCGCAATGGTCGTCATACGCCGTT 865476 31 100.0 33 ............................... TTGAGCGCGGGAAGAATGTGATTCTTTACCGCG 865412 31 100.0 34 ............................... TTGCCACCGACATAGAAGGTCTTGCCATCGCCGC 865347 31 100.0 35 ............................... CAGTGCGACCGCGCGGGCGTTCTCGGCGGTAACGT 865281 31 100.0 36 ............................... CATAATCATACCCTCCCAATCTGTTGTGCCAGCCTA 865214 31 100.0 35 ............................... ATCCGCTGCTTGTACAGCGCTACAACAGCAGTCAT 865148 31 100.0 34 ............................... TGAAGACGCCAACGTGATCTACCTGCGGGACGTC 865083 31 100.0 35 ............................... AAGCTCTTCGCTAAGCGTCTGCTCAATGAAGGAAG 865017 31 100.0 35 ............................... AATAACCTGGGCGCCCATCGTCAGACCTGCATGCA 864951 31 100.0 34 ............................... CCCGTGGCGGCGTCAGAGAAAACGTTTCAGGTCT 864886 31 100.0 33 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAG 864822 31 100.0 34 ............................... ATCCGACGAACGGTAGTTGTTTCATTTTTGGTCG 864757 31 100.0 34 ............................... TTGTAGTCAGGGTCGCACAGCGCACCAGTAGGAC 864692 31 100.0 35 ............................... GCATGTAGCCGGGGTGTAGGGGCAGCGCCCCTACG 864626 31 100.0 35 ............................... CGCAGATTCGGGCACAACAGACACCTGGGCACCCT 864560 31 100.0 35 ............................... CTGGAAGCTGGCCACCGATAAAGGCGTTGCCTTGT 864494 31 100.0 35 ............................... ATCGCCTGCATGCAAAGCGTCAAGCATGCGTGCAT 864428 31 100.0 36 ............................... TCCATCTAAGTCAATACAACTTGTTGGCGCTTGGCC 864361 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 864294 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 864228 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 864161 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 864096 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 864031 31 100.0 33 ............................... TTCAGTCAGGTATTGGGCTAGCGGCTGTGTCAA 863967 31 100.0 34 ............................... TAAGGAGGCTTTATGCCAGATGAAAAAAAGCTGG 863902 31 100.0 36 ............................... AGCTGGAAGAAGCCTAGGAAGGGTGTAAAGCCAGGT 863835 31 100.0 36 ............................... ACTCTAGTCTTTGATGTGCCTTCCGTCGCTGGGAAG 863768 31 100.0 35 ............................... ACGGATGTTGATAGTCAGCCTGGTGGGGCCTTGCA 863702 31 100.0 35 ............................... TCGCTGAGGGCAGTAAATACATCTGGCCGTCTATC 863636 31 100.0 36 ............................... GCGGCGGACTACGTCGCGGAGGCGAGCGTTAGTCTA 863569 31 100.0 35 ............................... ACCGTATCGCTAACCGATTGACGCGTGCGCAACCA 863503 31 100.0 35 ............................... CAAAGGCAGGCGGGACAATAGCGGGTGACCTGACT 863437 31 100.0 38 ............................... TGTCGATGACTCTTTCACCGTGGTTGCGGCGCATTGAG 863368 31 100.0 36 ............................... CGGGTACGTTACGCGCCCAGGGTCAACGGGCCTCCC 863301 31 100.0 34 ............................... CTGCACTACGAGGTGCTGACGATCGATCGCCGCT 863236 31 100.0 36 ............................... TCTTCACCAGATCGATACTTAACACGGATAGGTGTG 863169 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 863103 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 863038 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 862972 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 862907 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 862844 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 862780 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 862716 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 862650 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 862585 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 862520 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 862455 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 862389 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 862324 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 862259 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 862193 31 100.0 34 ............................... CAGTCTGCTGACATCGCCGACCAGTCGTCGTCGA 862128 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 862061 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 861995 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 861926 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 861860 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 861796 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 861730 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 861666 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 861601 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 861536 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 861470 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 861402 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 861336 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 861270 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 861204 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 861139 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 861073 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 861007 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 860942 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 860877 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 860812 31 100.0 34 ............................... TTTCAATGCCTCCTTTTGCAGTTCCTTGGTATCC 860747 31 96.8 35 A.............................. TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 860681 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 860615 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 860550 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 95 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //