Array 1 1847494-1849171 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJM01000009.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00219 2015LSAL00219_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1847494 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1847555 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1847616 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1847677 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1847738 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1847799 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1847860 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1847921 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1847982 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1848043 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1848104 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1848165 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1848226 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1848288 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1848349 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1848410 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1848471 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1848532 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1848594 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1848655 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1848716 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1848778 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1848839 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1848900 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1848961 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1849022 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1849083 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1849144 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1865430-1867411 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJM01000009.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00219 2015LSAL00219_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1865430 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1865491 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1865552 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1865613 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1865674 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1865735 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1865796 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1865857 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1865918 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1865979 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1866040 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1866101 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1866162 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1866223 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1866284 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1866345 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1866406 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1866467 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1866528 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1866589 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1866650 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1866711 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1866772 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1866833 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1866894 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1866955 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1867016 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1867077 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1867138 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1867199 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1867260 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1867321 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1867382 29 96.6 0 A............................ | A [1867408] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //