Array 1 6086081-6084953 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABEEV010000008.1 Pseudomonas aeruginosa strain NCTC11839, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6086080 29 100.0 32 ............................. AGGAACAACGCCCGCCAGCCTGCGACCATTCC 6086019 29 100.0 32 ............................. CCGCCACGTCTGCCTGCAAATCTTCATCAGCC 6085958 29 100.0 32 ............................. GTAGGCGCGCACGCCTTCCTGCACGTCCTGGA 6085897 29 100.0 32 ............................. GATCAGTGTCTGTTGACACTACCTCGACCCTT 6085836 29 100.0 32 ............................. CTTCCATCAGTTGCTCGTTGGAGTACTTGCCG 6085775 29 100.0 32 ............................. ATCACGTTTCCGACCGGGGGAAGCTGTCCAGT 6085714 29 100.0 32 ............................. TCGGCCTGTACGACGTTGACGGCCAGTTGCTC 6085653 29 100.0 32 ............................. CGGCTCATTGCGTTCGGGTGGACCGTCGAACA 6085592 29 100.0 33 ............................. GCGCTGGGTAACCTACGCGACAACAGCGAGTTC 6085530 29 100.0 32 ............................. AGTCTTCGTTTGCTGAGATCAAGGCGGCGATC 6085469 29 96.6 32 ..............T.............. GAGTTCGAAAACGGCCATCACACATTCCTCCG 6085408 29 100.0 32 ............................. GTCAAGTACGCGAACCTCACGACCGGCGAGGT 6085347 29 100.0 32 ............................. GCACTCCAGGGCGAACTGGACGGTATACGGCG 6085286 29 96.6 32 ............C................ GTAGTCCAGTGGCATCGACAGTTCGGCCAGGT 6085225 29 100.0 32 ............................. CCAGCGGCCTTGCACTTTGCCAGAGAGTTGTT 6085164 29 100.0 32 ............................. GCGGCACGCCTGGACGTGCTCCAGGACATCCG 6085103 29 100.0 32 ............................. TTCTCGTTCTACAACAGCACGAACGGCGGGGC 6085042 29 96.6 32 ...........A................. CAGGTGATCTGCGAGCTGCCGGCGTAGCCGAA 6084981 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTGGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGTCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTAGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6095832-6095254 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABEEV010000008.1 Pseudomonas aeruginosa strain NCTC11839, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6095831 29 100.0 32 ............................. AATCGCAAGCGCATGGTGACCGGTTATCGTGA 6095770 29 100.0 32 ............................. CTGTAGGTGGTGACATCGTCGTACGGCGCGGA 6095709 29 100.0 32 ............................. GTACTGCTCCCGAGCCTGCTGCCAACGGTAGT 6095648 29 100.0 32 ............................. TATGCTTTCATAACGGCGTGTCTTCAGGAGAA 6095587 29 100.0 32 ............................. CCGAAGCGCCGCAAAGTCGTGTTCAAAAGCCC 6095526 29 100.0 32 ............................. GCGGCAGCCTCCCTGATCGCGTAGAAAACGCC 6095465 29 100.0 32 ............................. CCGAGATGTGGCGCCGAAACGAGCGCGAGCGC 6095404 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 6095343 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 6095282 28 79.3 0 A..........A..C.....-..A....T | C [6095273] ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTAGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGTTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //