Array 1 80670-80041 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_BCCC01000043.1 Streptococcus suis strain MNCM11, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     80669	    36	 100.0	    30	....................................	CAATGACGATCTGAGCAACATCTGCCTGCT	
     80603	    36	 100.0	    30	....................................	TCACGAATTGAGCCAGTGCCAACAGCACCA	
     80537	    36	 100.0	    30	....................................	TTTAGAAAATGAAAAAGAAGAAACAGATGA	
     80471	    36	 100.0	    30	....................................	TCAATACGTGACGTATATTTCATAGGTTCG	
     80405	    36	 100.0	    30	....................................	TAGTAACAAATAAAGAAGTAAAAGAGGAAA	
     80339	    36	 100.0	    29	....................................	GGATTATTGAGTGGGTTAACATCTGCAGG 	
     80274	    36	  97.2	    30	A...................................	AACATCAATGTATTTCTTTTCGACCTTGTC	
     80208	    36	 100.0	    30	....................................	CACTTCCTTACGCTACTAATTTTCAGTTAA	
     80142	    36	 100.0	    30	....................................	CTTCTGGTAGTTATCCCCATAACATTTGTA	
     80076	    35	  83.3	     0	.......................T..T.-....TCA	|                             	T [80052]
==========	======	======	======	====================================	==============================	==================
        10	    36	  98.0	    30	GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC	                              	       

# Left flank :   TGAACTGCTCAGACGAGAATAGTTTCTTTAGCTGCTTAAATGCTTAACTTAATGACATTGGGTTGCCATTGAGAC
# Right flank :  TAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCCG

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.70,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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