Array 1 214619-217689 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXDK01000005.1 Moraxella catarrhalis strain 20236154 20236154_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 214619 28 100.0 32 ............................ ACTGTGCATGATATTGATATTTTGGAGATATG 214679 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 214739 28 100.0 32 ............................ ATCAGAATTGAACAAATTGTTGGTAAGCAAAA 214799 28 100.0 32 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTT 214859 28 100.0 32 ............................ TTGAATGCATTGCCTAGGATGGTTCGCTCATC 214919 28 100.0 32 ............................ TAGAAAGCGTCCTAGCGTGCGTTATATTGCCG 214979 28 100.0 32 ............................ CACGGCTCTCATGAAAACACCGCTCCAGTCAT 215039 28 100.0 33 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGTG 215100 28 100.0 33 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTTC 215161 28 100.0 32 ............................ GTAAACTTTACGCCCAATGTAGCGACTATTTT 215221 28 100.0 33 ............................ AGTATGGAATCGGCAACTACTCAGCTTGGCTAT 215282 28 100.0 32 ............................ ACAGGCAAGAATACTTATCATTTTGGGCATTG 215342 28 100.0 32 ............................ CAATCATTAATGCGTTGGCGGTGGCGTTTTTT 215402 28 100.0 32 ............................ TAACCAACTGAGCTATGAGCCCTTAAAAAAAT 215462 28 100.0 32 ............................ AAAAACTGCAAGCACTTGGAATATTGATTTTC 215522 28 100.0 32 ............................ TTTATTTTTCGATATTTTGTGCATTTTACACT 215582 28 100.0 33 ............................ GCCCAAGGGGTTTTTAGCACATACACGCCGTCA 215643 28 100.0 32 ............................ TTCGCCTGCGTTTTGACTTGCCTGTATTTTTG 215703 28 100.0 32 ............................ GCTCGGATAAGCTTTGGTTTGTCGTTGTTAGC 215763 28 100.0 32 ............................ AATGCTTGATACTGAATATTTTAGAGATTTTG 215823 28 100.0 32 ............................ TCTAGGCGTTGTTTTTGAAACACTTTGGCAAT 215883 28 100.0 32 ............................ AAATTCCTTTAGTGCTTACCAATACAGCTATA 215943 28 100.0 33 ............................ ATGTTCTCAGTGATAACACGCCCAACATCGATC 216004 28 100.0 32 ............................ AGTGATAGGGTATTTTCCTGCCACTTTCAAAT 216064 28 100.0 32 ............................ CAGTGTACCACCACCAGTTAGACCATTACCTG 216124 28 100.0 32 ............................ GCCAGTTGTGACCAATAAATATGAGATTGGTG 216184 28 100.0 34 ............................ GCACAAGAGATTATTTTGGTTCCGCCAAGCTCTG 216246 28 100.0 32 ............................ AATAGATTTTTTAAAAGTTTATTGGTTGTTTT 216306 28 100.0 32 ............................ ACCCAACCCATAGCGTTCGGCAGTGCATAGGT 216366 28 100.0 32 ............................ TCTTGACCACAGTTTACGCACGCCGATTGGCA 216426 28 100.0 32 ............................ AAATTCCTTTAGTGCTTACCAATACAGCTATA 216486 28 100.0 32 ............................ AATTCACGGATTGATGAGGTATGAGACCCCAC 216546 28 100.0 32 ............................ TTTTATCATAATTACTTGTTATTTCTTATTAT 216606 28 96.4 32 ...................A........ CACTCAATGTATAACACCGTCCGCACCAGTGA 216666 28 100.0 32 ............................ ACTTGCCCAGTCTGTCCAATCGCTTGTATTGC 216726 28 100.0 32 ............................ CTGGCGGCTGGGAAGTTAAACAAACAGCTTAT 216786 28 100.0 32 ............................ TTCAGTTCTTTCACTTGATAATGAACCTGCTT 216846 28 100.0 32 ............................ TATATCCGCAGAGCTTTAGCAGATAATGGTAG 216906 28 100.0 32 ............................ ACGTGTGAAAAAGCGTGTCACTGCATCATAAA 216966 28 100.0 32 ............................ AACTTTTTAAAATACTGCTTGATGGATTCATC 217026 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 217086 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 217146 28 100.0 9 ............................ TTTTGCTGT Deletion [217183] 217183 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 217243 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 217303 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 217363 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 217423 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 217482 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 217542 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 217602 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 217662 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 52 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATTACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGTATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //