Array 1 163513-160552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBM010000006.1 Salmonella enterica strain F5-10 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163512 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 163451 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 163390 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 163329 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 163268 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 163207 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 163146 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 163085 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 163024 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 162963 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 162902 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 162841 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 162780 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 162719 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 162658 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 162597 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 162536 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 162475 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 162414 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 162353 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 162292 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 162231 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 162169 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 162108 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 162047 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 161986 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 161925 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 161864 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 161803 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 161742 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 161681 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 161620 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 161559 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 161498 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 161437 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 161376 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 161315 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 161253 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 161192 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 161131 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 161070 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 161009 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 160948 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 160887 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 160826 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 160765 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 160703 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 160642 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 160581 29 96.6 0 ............T................ | A [160554] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181145-179772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBM010000006.1 Salmonella enterica strain F5-10 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181144 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 181083 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 181022 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 180961 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 180900 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 180839 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 180777 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 180716 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 180655 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 180594 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 180533 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 180472 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 180411 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 180349 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 180288 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 180227 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 180165 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 180104 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 180043 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 179982 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 179921 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 179860 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 179799 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //