Array 1 12823-6123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPV01000052.1 Methanosarcina mazei strain 3.H.M.1B.2 scaffold48_1_size28917-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 12822 37 100.0 36 ..................................... GACATTTACTTTTCACTCTCCTTTTTTAACTGTTTC 12749 37 100.0 35 ..................................... ACAAAATAACTTCCCATTTCAGCAGGCGCAATATA 12677 37 100.0 34 ..................................... AGGGGACGTTCGACGCTTCAACGAATGCCGGCGC 12606 37 100.0 35 ..................................... AGAAGACCGAGGTGAAAATGAATTGAACTCTGAAC 12534 37 100.0 36 ..................................... TATTATTTTCAAGAGTGTTCGCCATTTCATAAACTG 12461 37 100.0 36 ..................................... ATTGTTGCAGGCTTAAACCCGTCCCGGTTAGCCTGT 12388 37 100.0 34 ..................................... ACTTCAAAAACATCGCCCGGAGCTATAAATTTAG 12317 37 100.0 36 ..................................... TGATGATCGAGAAGTAATGCTTACTATCCCTGAACA 12244 37 100.0 37 ..................................... AAATATCATATGCAGGAGCAGAGTCTTCAAAAACGGT 12170 37 100.0 37 ..................................... TCAAGCTGCACCCCAGGTCCTGCACTTTCCCGCGCCG 12096 37 100.0 35 ..................................... TTTTAAAAGTCAAATATTCCACTTTTCCAGGATCG 12024 37 100.0 36 ..................................... AGTGTAGGGGTATCGAAGAGAACATATACATCTAAG 11951 37 100.0 37 ..................................... CTTGTGGGGTTCCAATAATCAAAACCTGCCCGGAGAT 11877 37 100.0 34 ..................................... GGAAGTCCTCTTTTGGGAATTGCTTTTTGAATGC 11806 37 100.0 38 ..................................... AAATGTCTTCGACTTTTTTTAATTGGTCTGCAGATTCA 11731 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 11657 37 100.0 34 ..................................... CAAACTTTGTTAAGAGAGGGCTTACCCGTTCAAA 11586 37 100.0 35 ..................................... CGAATGGCTCTCTCTCTACCAACAAAGACCAAGTG 11514 37 100.0 35 ..................................... ACCATCCGTTACATCTCTTTGGTAATGTGAATTCT 11442 37 100.0 35 ..................................... TTTGACAATAGTACAATTTTTGAACCTGGTGTACC 11370 37 100.0 37 ..................................... ACTGTGCCAGAAATGAGAACATCGAGACAATTATGCC 11296 37 100.0 35 ..................................... TGTCAATAATTTATGCGCGGAGAAAAAACGGGGTG 11224 37 100.0 35 ..................................... TTCACTTTCCTTTTTCTTTACATAAATTTCAAACT 11152 37 100.0 37 ..................................... TGTTTTCAACATAATGAAAAACTTGGAGCCATCTGTA 11078 37 100.0 34 ..................................... TGAATACGAATTATGAAAGATTAAATCCAGATGG 11007 37 100.0 37 ..................................... TAAATGTCTGTAAAACCATATAGTATAATGTCAGTGG 10933 37 100.0 35 ..................................... TCACATATTCGAGTTTTGTAAGTTCACTAATTACA 10861 37 100.0 35 ..................................... AGGGTTTTAGAGGTCATTTTCACACCCCGAAGAAA 10789 37 100.0 34 ..................................... ACCGTGTCAATCGCTTACGGTTTTAAACAGCAAA 10718 37 100.0 36 ..................................... CCATGTGTGCAGCTCCGGGGTCTATATTCTATTCAC 10645 37 100.0 34 ..................................... TCTTGAGCGAGGGCGTTTCCAACGTCCACCTGTT 10574 37 100.0 36 ..................................... CAGGAGATGCTACAGCAGAAATTAAACTCGATGATT 10501 37 100.0 36 ..................................... TAGGTAATCCCGGCATGAAGCCCACACTCTGAAATA 10428 37 100.0 34 ..................................... CTGACCATATGTTTGCTCATAATGGGAGTTCGGG 10357 37 100.0 36 ..................................... GTGGATATAGAGTCTGAAAAATAATCATGTTGCTGA 10284 37 100.0 36 ..................................... AAGTCCTCTGTTGTTCTTATATGCTCCCGCGAAAGT 10211 37 100.0 35 ..................................... TGGTTGACGTATGCGGTTCTACCAGGAACATAATA 10139 37 100.0 34 ..................................... ATTAATCCCCCCTTCTCCCTTCAGCTTGAACAGA 10068 37 100.0 35 ..................................... TTTCGGCATCTTTGATACTCATCTCAAGAAGAACA 9996 37 100.0 37 ..................................... TATACATCATCAAATAATTAACAGTGATAAAAACATT 9922 37 100.0 36 ..................................... TGTAATTGTCATGGATCAGGACATTATCACAATTAT 9849 37 100.0 36 ..................................... AGAATTCGATTCAGGACAACATGGTATAATATCGAA 9776 37 100.0 36 ..................................... TCATTAGCCTTGTCAAGCTCCCATTTAAAACGGAGG 9703 37 100.0 37 ..................................... TTCGGATGATGCAAATTTTACAGACGATACCATCGCG 9629 37 100.0 35 ..................................... TAGATTTCTAGGGATCTATCGAAGTCTTCAGTATT 9557 37 100.0 36 ..................................... AAGAGCTCATTGATTCAAGTATAAGGCTGTGGGACT 9484 37 100.0 36 ..................................... TTTTTGGTATGTCCTGGAGCTGCCAAAATAACACAG 9411 37 100.0 36 ..................................... ATACAGGTTGACTGCCCGGAGTTCAAAACGCTTGAG 9338 37 100.0 35 ..................................... AGCAAAAAGTAAAATCAGGCACTATAAGCATAAAT 9266 37 100.0 36 ..................................... TAGGATCATAAATTATTATTTTCCCCGCTGCATCTG 9193 37 100.0 35 ..................................... TAACAATTTGATTACAGGTTGTGGATGGGGAAACA 9121 37 100.0 37 ..................................... TTGGGTTGGCGGGATCATCTCAAGCGGGTACAATAAT 9047 37 100.0 36 ..................................... AAATTCCTTCTGAAGAATTGAACGGGGCTTCAGTTG 8974 37 100.0 35 ..................................... TTTCCTGGTTTCAGCCATTCGGGCAATTAGATTAA 8902 37 100.0 35 ..................................... ATTCCTTATTTTCCTCTTAATTTCTCCTCTCACTT 8830 37 100.0 34 ..................................... ACATATTTTAAAGGGAAAAAAGAAGATAAGTAAA 8759 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 8685 37 100.0 37 ..................................... GAAGTCGTCTTTTCACATCGTAAAGTATTGCTAGTTC 8611 37 100.0 36 ..................................... GTCCCAGACAGGAATAATAAACCCACTCTCGCACAA 8538 37 100.0 34 ..................................... CTCTCGAAGAACCTTTTTTTTGTTTTCCCATCGG 8467 37 100.0 38 ..................................... TTCGTTATCTTCCGGCTAATTATGCCTCTCACGTCCAA 8392 37 100.0 35 ..................................... TTCCCCGCTCTATCTCATCTAGAGCTACCTGGACG 8320 37 100.0 37 ..................................... TACATGGTATTAATATGGAACCAAAAATCCCCCCACT 8246 37 100.0 35 ..................................... TCAGGAAGAGGGTTTTACTCATGCTCCTGTGATTT 8174 37 100.0 34 ..................................... GAATTCAGAAGAGGATACATTGCCATCATGGCAA 8103 37 100.0 36 ..................................... TGATGATAGAGAATACGAAATCGAGAGTTTCAAACG 8030 37 100.0 35 ..................................... TACTGATGACTTTGATGATATTGCCGACTCTACTA 7958 37 100.0 34 ..................................... TCATTAAATGCTTTTCAAGACTGGTATTATCAGG 7887 37 100.0 36 ..................................... TATATGATTAGTGTATAGTAAGAGTATTGAAAAGCG 7814 37 100.0 37 ..................................... ATACAAGCTAAAGTATCTAATTCTACCTCTACTACAC 7740 37 100.0 35 ..................................... GTTGCAGGGTGGGGAGATGGGACACAGCTTAATGA 7668 37 100.0 34 ..................................... TTCCTAGTCTTAGATCGGCATACCTGAGGGCCTT 7597 37 100.0 33 ..................................... ATCAATCGCGGAATCCCTTAAAATTCTGGCAGC 7527 37 100.0 35 ..................................... TCTGCTGGGCCGGGGTTCAAAATAATCTCATCAAG 7455 37 100.0 35 ..................................... AATATTCTGAAAGGTTGCAGGCTGAAGACAGATGT 7383 37 100.0 34 ..................................... CAACAATTGGGTTACTATTTTGTGTGTTGGTGGA 7312 37 100.0 35 ..................................... TCCTGGGGCTTCTTATGGCCTCTGTGGTCATGTTA 7240 37 100.0 35 ..................................... CTAAAATAGTAATGATAGTTTCATATGTATATATT 7168 37 100.0 36 ..................................... CATGTTTGAAGGACGCAACAGCTATGTTACGCCTGC 7095 37 100.0 37 ..................................... GTATCTACCCCTTCTCTATCCCATTTGTGTGGTGCCT 7021 37 100.0 34 ..................................... TTAACCTCAAAAACACCTAAAATCTCACAAGCTG 6950 37 100.0 37 ..................................... CTTAGGGATATGTTTAGCTCATATATAATGTATATGA 6876 37 100.0 37 ..................................... ATTTGCAATTGTATATAGTACAAAGTTATACATTGAA 6802 37 100.0 34 ..................................... TACTTTATATAGCTTTCTGCGTCTGATTCAGAGA 6731 37 100.0 31 ..................................... TGTCACAATTGTAGTGATATTAATAGCCCGT 6663 37 100.0 34 ..................................... TCATCAGAAAGCCCGCGTGAATACTTCATTTTCT 6592 37 100.0 34 ..................................... TTGCAGGTTTCACCGGTTATGTCACATGTTACAG 6521 37 100.0 35 ..................................... CGGTTCAGGACTCGGTAGAGCACTATTCCCGAAAG 6449 37 97.3 35 ..................C.................. TCTGAGGAGACCACTAAAGCCAGTCGGACCCACTG 6377 37 97.3 36 ..................C.................. AATGTATACGTCCTATATTAACAGGTATAAAAACGG 6304 37 97.3 36 ..................C.................. ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 6231 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 6159 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ====================================== ================== 93 37 99.8 35 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAACT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 38480-45303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPV01000090.1 Methanosarcina mazei strain 3.H.M.1B.2 scaffold13_1_size138620-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 38480 37 100.0 35 ..................................... ATTTCAACTGTTTCTTTTTTGTCTATTTTTTTGAT 38552 37 100.0 37 ..................................... CAAGTTCCCCTGCTATGATAGATGAGTCTGTTCCGGG 38626 37 100.0 34 ..................................... TGCGTTTGATAATAACCTGAACGAAAATCACCGG 38697 37 100.0 34 ..................................... CCATTTTTACACCTGTTATTTTACCAGACTTTTT 38768 37 100.0 34 ..................................... CCATCAGGTCTGATCCTCTGTATGAGTTCTCTTT 38839 37 100.0 34 ..................................... GGACATACAGGCTTTGCTTTCGCTGTCGTGCCGT 38910 37 100.0 35 ..................................... AGTATCTTGTTTTCTAATTCCAACCTCTTATTTTT 38982 37 100.0 37 ..................................... CAAGGTCATATACTCTGTTTTTTAGTTCTAGAATTTC 39056 37 100.0 35 ..................................... CATGGATCTCTCTGTCTTCGTAATCTTTAAGTGGT 39128 37 100.0 33 ..................................... TTATCAAGATGTTTCCAAGAGTAATAAATCCGA 39198 37 100.0 35 ..................................... CAGTCTCGCTCATCTTTAGTTTCCTCCTATTTTAC 39270 37 100.0 37 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAGAA 39344 37 100.0 37 ..................................... CTCTCTGAAATTTCTTCGTTTTCCTCTGTCATTCCGA 39418 37 100.0 36 ..................................... GACGGGTTGCTGCTTCCAAAAGTTCGGGAAATTCAA 39491 37 100.0 34 ..................................... TTACTCTGCTTTCTCTATTCGGTTTATATGCAAG 39562 37 100.0 36 ..................................... CACATTAAAATAATGAAATCTGTATTTGCTTTCAAC 39635 37 100.0 34 ..................................... TAATATAAGTCGCCTTGACATAGAAAAATTAAGG 39706 37 100.0 36 ..................................... ATAGACCGCACAAAAGACGACGCACTAGAAAAGCTT 39779 37 100.0 36 ..................................... TGTTAAAGAGGTATGGTTAGAGAAGGGCGTGCCGGA 39852 37 100.0 35 ..................................... GCAGATGGCGAAAAATGTTATTTAGTTGATAAGAA 39924 37 100.0 33 ..................................... CGGACTTAAGGAATCTATTGTTTGGATGGATTA 39994 37 100.0 35 ..................................... CCCTTCTTACCATCGTTCAAGCCTCCTGCTTCTCT 40066 37 100.0 35 ..................................... CACTTGCTAAAAGTGTGTATCCATTCCCTAGATCC 40138 37 100.0 37 ..................................... GACGACTTGAAGAAAGAGCTTGAAGAGCTTAAAGAGG 40212 37 100.0 37 ..................................... TCGACAATATTTGAATCCAGATTTGGATTTAGTTTTT 40286 37 100.0 35 ..................................... ATTTCTCAGCCGGGTGTCCTGCTTCGACAAGTATC 40358 37 100.0 36 ..................................... ATAAGGACGCAAGACCGGACTTAGGCTGTCTTCAGG 40431 37 100.0 38 ..................................... TAATAAGTTAGGTGGTCCGTGTCAGGCATTATAAAGTG 40506 37 100.0 35 ..................................... TATTCCTGATTCGAACAGGAATCATAGCCTAACTT 40578 37 100.0 38 ..................................... TAAGTCGTTTGCGGAAGCAAAACGGGACATTGTGAGAA 40653 37 100.0 35 ..................................... GGTATTCCATATATAGTAATAGTAATAATAGTATT 40725 37 100.0 37 ..................................... CCGTAAAAGTAGCTCCACTTGTAAAACATGTAATTGC 40799 37 100.0 36 ..................................... GGTAAATTGATGCTGGAGCTGCACTTGTACTGAATA 40872 37 100.0 37 ..................................... AAATCAGGTTTTGATCTCTAACCAAAATCTTTTTATT 40946 37 100.0 36 ..................................... ATCAGTCGCACCAGCCAGCCCACAAGTCAACAAAAA 41019 37 100.0 34 ..................................... TGTGAGCGTATAAGGAAGTGGTCAAACCTACAGA 41090 37 100.0 35 ..................................... TGGCCCAGTAACTACATCATCAGCAAACATAATTT 41162 37 100.0 36 ..................................... TTCAGTTCGTCTTTGCCGGGATCTCAAAACTCAAAT 41235 37 100.0 35 ..................................... ACATGAAAGCTATACAAAGCTGATGCCAAAAATAT 41307 37 100.0 34 ..................................... AGGACGTTGCAGGCGCGACGGATAAGGCTGCTAA 41378 37 100.0 36 ..................................... TTATAATCGTAACCCTTGCGCCCGTTCATGATCCAG 41451 37 100.0 38 ..................................... TAACTGTATTCATTTTCAAGGAACCGCTTCAGTTCCGG 41526 37 100.0 34 ..................................... AGGAGGAGGATACATATCTCAGTTGCTCTATCAA 41597 37 100.0 33 ..................................... TTCCAATGAAATTGTGGTATCCCATTCCTAAGC 41667 37 100.0 36 ..................................... CGCATTTTGTATTCCTCCCATAGCGTGCAGTATTAT 41740 37 100.0 36 ..................................... CATCTAATTTAGGATCAGACCAACGTATCAAACCGC 41813 37 100.0 35 ..................................... ATAAAACAGTTGATGCATACGCTGTGCTTTGTGAA 41885 37 100.0 37 ..................................... TCAAGTCCATCAAATTCATTTGATCTGCATTCGTGTC 41959 37 100.0 34 ..................................... TGAACCGCAATTCCGGCTCTTCTAGTGACTCCGG 42030 37 100.0 35 ..................................... AAGATATTATCTCTTATCTCCTCTTGCATTTCTGT 42102 37 100.0 37 ..................................... TGAAACATACTCTCATCGGGTAGCTGCAAGAGTCCCT 42176 37 100.0 34 ..................................... TGAACCGCAATTCCGGCTCTTCTAGTGACTCCGG 42247 37 100.0 35 ..................................... TGATAGAATATGTACGCATATCCAGCCAATGCCGC 42319 37 100.0 37 ..................................... TACTCACATTAACAATATCGTCCAACCTTTCGACGGC 42393 37 100.0 38 ..................................... ATGACAACGTTAAACCCTCCCAACCAATATCAATAGAA 42468 37 100.0 37 ..................................... ACCGCGACAGTCGCCTGATCCGCGTCTCCCTTCACCC 42542 37 100.0 32 ..................................... ACGAACTGCCAGCCGTAGAATCAGCAACTTAT 42611 37 100.0 38 ..................................... CCTTTTTATCGAGCGAAGTAACTTCAACTGAAAAAAAA 42686 37 100.0 37 ..................................... CCATGTGGTGAAGTCCGTAGCTGGCGTTTGTTGAATC 42760 37 100.0 34 ..................................... GCAGCTTCAGGAGACAGTCTGACAGTAACAGTTT 42831 37 100.0 36 ..................................... TACTCTTCATAGAAGTCTTTCAGGCTTTCAATATCG 42904 37 100.0 35 ..................................... AAAAAAAGTCAAGTAGATATAAAAGGGAAAATCAA 42976 37 100.0 35 ..................................... ATAAGGTCACGTCTATTTATGAACTTTTGAGAACA 43048 37 100.0 37 ..................................... AGAGCTTCACAAGCGCAATCTCTAGCTCCCTGAACAA 43122 37 100.0 36 ..................................... GGATGACTCTCGATTACATAGACGAAAATCCTGAAT 43195 37 100.0 35 ..................................... CTGAAACTCTTCCTGGAGATGGGACTGATACAGAC 43267 37 100.0 36 ..................................... ACTTTAGGTTGAGCCATTTGCTGAACACTAAGATCT 43340 37 100.0 37 ..................................... AGATATATCTGGCTGTCGTAAACACGTTCCGGTTTTT 43414 37 100.0 35 ..................................... TGATTCTTGGGGGCCGGCTTTCTGGCTGGTTGGAA 43486 37 97.3 36 .....C............................... TCCATCCTGTTTTCAAACTGCTCTACAATAAAAGCA 43559 37 100.0 35 ..................................... CTGCACAACTAATGTACTAATTTGTACTATGAAAT 43631 37 100.0 38 ..................................... CATTGCAGACTGATGGTTATGTCTGAGCGATAATTATA 43706 37 100.0 37 ..................................... TTTGTACATCCTGATATTTTTGACACATCTGTTCTAC 43780 37 100.0 35 ..................................... ATTATCATCAGTGTACTTTCAATGACACTGATTCT 43852 37 100.0 35 ..................................... AAGTAGTCTATGAAGATAAGGATTTAACACAATTC 43924 37 100.0 34 ..................................... ACATAACCTAACATAAGTTATATATACTATTAGG 43995 37 100.0 35 ..................................... TTAATATCTGCATCATACCAGGAATAACGGTTATA 44067 37 100.0 35 ..................................... AAATTGCATCGGCTGAGAATGTGTTAGAATACCGG 44139 37 97.3 33 ...........G......................... TAAATTAAAATTAGTAAATCCTTATACAGATGA 44209 37 100.0 35 ..................................... GATTTTCTGCTATACACATCTGTTCATAGTTGTTC 44281 37 97.3 37 .....C............................... TGTATGACTTCGTGATTGCAAACAGCCCATTGCTGAT 44355 37 97.3 35 .....A............................... ATCCTCCTGGTATGGGTAGCTGGATTTTTCTTTTT 44427 37 97.3 35 .....A............................... TATTTTCCTTTCAAATCATCAATTTCAGATTCAAA 44499 37 97.3 35 .....A............................... CCTGATACTGCTACTGGTCTCTGTTGATAGAGTGA 44571 37 97.3 36 .....A............................... AACGCAGTGGTGCAGGCTCTTATAGAGGTCGGAAGT 44644 37 97.3 37 .....A............................... AAAGCGGTTCTGGATCGTCTCAAAGTTCTGACGGGGT 44718 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 44793 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 44868 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 44939 37 91.9 71 .....A.............................GT CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAACCTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 45047 37 81.1 35 TG...A...T.GCT....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT A [45052] 45120 37 83.8 34 .G...A...T.GCT....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT A [45127] 45192 37 81.1 36 GG...A...T.GCT....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC A [45197] 45266 37 78.4 0 TG...A...T.GCT......................G | A [45271] ========== ====== ====== ====== ===================================== ======================================================================= ================== 94 37 98.8 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : GTTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //