Array 1 130184-130578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHA01000019.1 Streptomyces sp. NRRL F-5681 contig19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 130184 29 100.0 32 ............................. GGCACGACGGGTTGGCCGAAGGCCGACGTGCT 130245 29 100.0 32 ............................. GTCTACCCCATCTTCGACTGGGTGACGGAAGA 130306 29 100.0 32 ............................. CTCGCGAAGACCCTCGCCCAGTCCTGGGGCAA 130367 29 96.6 32 ...........A................. CGTTCGGCCATCCGCAGGTGACCACGGTGCTG 130428 29 93.1 32 .C.........A................. GGCTCGAACTCTCCCGGCAACCAGGCGAGTCC 130489 29 100.0 32 ............................. GCTGCGTGGCTCGCCTACCGTCTGGGCTCCGA 130550 29 86.2 0 .............A..T........G..T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GCGAGCGCGGGCATGCGTGATGGCTCCTGTAACGGACACGGGGACGGCCGACGACCGGGGAGGGGAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGGGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTGGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCGTCTTCCGACCGACCCTGGCGACCCGGGGGCGACGGGCTGCCGCCAACAGTCCGGGGTACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGAAAGCAGATCCCGGGGGTGCTGAACTCCGCCCACCTGGCGACCCATTCGAAACTTAAGGCCACATATGCCCGACTCTCAAGAAGTTCCCCAAAACGACCCCTCGGCCGGATAAACCCGCAGACCACGAAG # Right flank : TACCCATCCCGATGCGATGCCGTGGTGAGTCAAATGGCCTCGGGCGCGGGTGATCCGTCCTTCAGTCAGGCCCGCCCTACACCCACGCCCCCCATGTGCAGATCTATGCACACAAGCACTCTTACGGGAACAAGCGCTGGAACGCCCTCTTGAACAGCGCTACTTCGTGCCAGATCACGATGCAGACAACTACAAACCCCCGCAGCCGGAGGAAGCCCATGTCGTTACAGTTCATTGGGATCGACCCGCAGACGGGCGATGACGAGAGCCCGACCGCGTGGATCGACCGGGAGAACGGGGAGCTCGTTTTCCAGGGGTGGAAGCCCGGCCCCGAACTCGAAGCCGAATGTGCCGCCCTCGAACTGTCTGGGCACGCCGTAGGAATCCCCGAGACCGAAGCCGTGGTCCGCATCCCCGCCAGGATGGTGGACATGATCAGGGAGGCATGCGATGCCCTCGAACGCGCCGACGGCGTTCGCTGACCTGCTGGCCAAGTGCGA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 131816-132699 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHA01000019.1 Streptomyces sp. NRRL F-5681 contig19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131816 29 100.0 32 ............................. TCTCACGAAGGTGCCGACATGGCGAAGCGTAC 131877 29 100.0 32 ............................. ATGCTCTGCCAGTAGACGCTTGCGGACATCGG 131938 29 100.0 32 ............................. CACGTCGCGCAGATCGCCCCCGCCGGAGCCTG 131999 29 100.0 32 ............................. CGCATGTCGTACTGAACGAAGGTGTCGATGCG 132060 29 100.0 32 ............................. ACGGCCCGCCTGCTGCGCTACCCGGAAGGACT 132121 29 100.0 32 ............................. ATGTTCGGTTCCGGATGGGACACCCTCAAGGG 132182 29 100.0 32 ............................. TCCCGGCGCAGGGCTTCGACGACCAGGGCAGT 132243 29 100.0 32 ............................. TCCCACGACTTCCGGGAGACCTGGACGGCCCG 132304 29 96.6 32 .......T..................... TCGGCCAAGCAGGCGAAGCTGTGGCATCAGGG 132365 29 96.6 32 ...C......................... AGCACGCTGACCACTTCGCCGTACACGTCGAT 132426 29 93.1 32 ...C.......C................. TGGTCGATGAGCAGCCCGACCGCGACGAGGTG 132487 29 96.6 32 ...C......................... GGATCACGGCTCACGTAGGGTCGGGGGCAGTC 132548 29 96.6 32 ...C......................... ATCGCCGAAGAGACCCAGTCAGGCATCTTCCA 132609 29 93.1 32 ...C..........G.............. AACCGCTGGCAGCCTCTCAACGGCGGCCACAG C [132625] 132671 29 96.6 0 ...C......................... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.9 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : AACATCGCCGCCGGTGAACAGGTACGGTGGCTGCCCCGCCGTCAGGCATCCGACATCCCTCTGCCCGGTAACGACTTCTGGCTGTTCGATGACCGTCTCGTCCGGTGGAACCACTTCGGCGGCGACGGCTCCTCGCAAGGGCCGGAGCACACTACCGACTCGACGGCCGTGAAGCTGTGCGGGAAAGCATTCGAAGCCGTTTGGGATCGCGGCATACCGCACGACCAGTACGACATCCGCTGACAACCGCCCCCGGACGCCCCTCTTCTCAGCGCCAACGAGAGCGCCGCCGACGCCTGGAAGGCTCCGACCTAGGATCCGGTCGCGGCTGCACCTCTTCACAGAAGCCGCAAGAAGCCCTCCCCCGCAATGAGGGACGTGCAGAATAGCTTCTGTCGAGCATCAAGCAGGCCGATTCACCCCGAAGGTCCCGCATGACCGTTTCTCAAGAAGTTAGCAAAAACGGGCCTACGGCCACCTAAACCCGCAGGTCACGAACA # Right flank : CGCCGCCGCCCTGCGGATGCTGCTCCAGGACGGGTGCTCCCCGCGTACGGGGTTGGCCCCTCCACACCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCCATCGCGATACGCACGCGCACGCCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGACCCCTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGCGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAACGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGTCAGCGCGAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 136980-138545 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHA01000019.1 Streptomyces sp. NRRL F-5681 contig19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 136980 30 96.7 31 .............................A GGGCCGGGACGATGCCGCACGCCATGACGAT 137041 30 100.0 31 .............................. CGCCCTCGGTGAAGATGACGAGATCGGGAGT 137102 30 96.7 31 .............................T GCTTGAGCAGCGACACCAGGACGGACGCGGA 137163 30 93.3 31 ............................TC GCGTTCCGCGATACGCACGCCCAGCAGGATG 137224 30 96.7 31 .............................T GGCCCGGGGGCGGGGCACCCGGTGACCGCCT 137285 30 100.0 31 .............................. GGTGACGGGTGAGCAGAGCCCGCTCCTCAAC 137346 30 96.7 31 .............................T TGCTTTTCGCCGCTGCCTTGCCGGTCTGTGT 137407 30 100.0 31 .............................. GATCGTGCCCGGCCCCACCTGGCCGGAGGCG 137468 30 96.7 31 .............................A CGGCCGGATCGAGGGCGATCCCCGCTCCCCG 137529 30 93.3 31 ............................AC GCTGACCACGAGTCAGATCCCGCTGGACACG 137590 30 96.7 31 .............................A GCTGGACCTCCTACAAGCGCGACCCCGCCCT 137651 30 100.0 31 .............................. GTGGTCCCGGCCTGCCACCCGGTCCCGGCCG 137712 30 96.7 31 .............................T CGGTCGTCAAGCCCCTGATCAACAAGATCTC 137773 30 96.7 31 ............................T. GGCCCTGATCGAGGCCGACTTCCAGCAGACG 137834 30 96.7 32 .............................C CTGCGCGAGGCAGGCGTGAACGTGTTGCTCGG 137896 30 100.0 31 .............................. GAGAGCCTGATGGCCGACAACAAGCAGGAGG 137957 30 96.7 31 .............................C TGCGCAGCGCGTCCGCCGGTGTATCCAGCGG 138018 30 100.0 31 .............................. GTGACGGGTCCTTCGCGTCTAGGGAAGACAG 138079 30 100.0 41 .............................. CGGGCTGCGGGTTGTACCGGGTACTGCGGCCCCGCAGCGTG 138150 30 96.7 31 .............................T CGCCGGCCTGCTTTCCGTTCCCGGACTGCGT 138211 30 93.3 31 .........A...................A TCAGCGGCAGGGACTCGGGCAGGGTGTACGT 138272 30 93.3 31 ............................TA AGCTCGCGCAGCTCCGCCGACATGATCGGGT 138333 30 96.7 31 .............................T CGGCTCCCTGCCGAACGCGAACGCGGCCTCG 138394 30 100.0 31 .............................. CCGTACGCGCCTTCCAGCGCGCACAGGGGTG 138455 29 90.0 31 ............AT...........-.... ACGACAGTGGTCGGCGCATCTGTACGACGGT 138515 30 80.0 0 ...........C.GT...C..C.......A | G [138528] ========== ====== ====== ====== ============================== ========================================= ================== 26 30 96.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCACCGCCCTCACCGCAGGACTCCCCACCCGCATCGACTCCCCCGCCGGCCTCCTCCACCGCCGCCTCACCGACAAAATCCCACCCCACATCCCCACGACGACAGAAGCCCGATCGCCGAGCACCGCCAAACCCACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCGGAAGCCCTGCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGCAGCAACGACACCACACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCAGGCGAGGGGTCGTTGTTGGGCAGGACGGCCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCTCCTTCCACCGAAGCCGGGACAATGAGACCTGTGGTGCGCAGAATGGCATCAACCGAACCACACCGGCGGCGTCGTCCGCCGCGCCCTCGGC # Right flank : ACGGATGTTCGCGGTGCCGCTTCGGCCGTCCCGTGTTCCGTAGCCGCCCCCGGGCACTCGGCGCGACACCGGGCCGCCCCGCCCTCCCCACCCCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGCCGCCCACTGCGCCACCACCCGCGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTTCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCTCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20437-21200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHA01000037.1 Streptomyces sp. NRRL F-5681 contig37.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 20437 30 93.3 31 ...A.........................G TCGAGTTTGGCCTGGACGTCGCCACGGGCAG 20498 30 100.0 31 .............................. GGTAGGCGTCGTCGTCGACCTTGCCGAAGGC 20559 30 96.7 31 .............................C CGCCGCCTGCGTCTGCACGGTCGGGGGCTGC 20620 30 93.3 31 .............G...............C GGCTCGACGTCGACCAGCTGCGGCATCCAGT 20681 30 93.3 31 ....G........................G TCACGCTGTCGCCTCCTTCCCGTATCCGAAT 20742 30 96.7 31 .............................A CCATCCGCGCGAAGAACGGCACCCGGAAGTG 20803 30 96.7 31 .............................G GGGACGGGATCATGGTCGCGGATCTCCGCCT 20864 30 100.0 31 .............................. CCCAGATGGCGGTGCAGCGGAGCCTCGCCGC 20925 30 93.3 31 ............................TC CCGGCTCGTCCAGCAGCTAGTGGTAGCAGGG 20986 30 96.7 32 ...........A.................. CGCGGCGGATGACCTGGCCCTCGGGATCGAGG 21048 30 90.0 31 .........A...............C...C CGGGCGAGGGCGGCACCATGACGCCCGGCCA 21109 30 93.3 31 ......................C......G CGTTGGCGTAGGCGCACCCCTGCTCCGGGCC 21170 30 86.7 0 ...T......T...............A.T. | C [21195] ========== ====== ====== ====== ============================== ================================ ================== 13 30 94.6 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : AACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGACCTCTGAAAGTCAACCGACGACGGGCGACACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGAAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAAACCGTCGAACCCGCCGAACCCCAACCACGAAGCCCCTCCCGAAAAGGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTATGACCACTTTGCCCCGGAGAGCGAGATATGCCAGTTTCTCAACAAGTTAGTAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACT # Right flank : TGTCCCAAGTCGAGGAGTCTGCGGACCTACCAACGCAGTCGAGGCAGTAACTGCGGTCGCCCTACCTGCTTCGATACGGAAATCTACAGGCCCCGCAACGAAGTTGAGCTGACGGTCAACGACCTCAACTGGCTCCATTCGGTGGCTGCGCGATGCGACTAGCGCGCCCACGCCTTCCAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGGCTTCGGGGGTAGATCCATTATCGCGCTCCACAGAGGCGCTTGTCACCGCTCTCCGGAATGATCTTTACGCCCGTTATGCGCCCATAGGGTTACGGGGATCGAGCACGACATACCAACCTGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTGACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCACGCCAACAGCGATGATTTTTCTGAGCAGTTGGCATGGCGCCGGCTTACCGCGCAGCACGGTGACCGGCTCGGACAGATC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22356-23117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHA01000037.1 Streptomyces sp. NRRL F-5681 contig37.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 22356 30 96.7 31 ...............A.............. TCGGACACGAAGTTGGGGGCGCCCGGAGTGT 22417 30 93.3 31 ...............A.............C GCGCGGAGTGCGCTATTTTCAATCCTGGAAA 22478 30 93.3 31 ...............A.............G GGTTGAGCCCCGATGTCTCCGCCTGGTAATT 22539 30 93.3 31 ...........C.................C GGCCGCCGGAGAAGTGCCCCCATCCCCGGCT 22600 30 93.3 31 ...........C.................C GGCCGCCGGAGAAGTGCCCCCATCCCCGGCT 22661 30 96.7 31 .............................C CAGCGGACGTGATCCGCGACGGAGTTGGTGG 22722 30 100.0 31 .............................. GACCCTGGCCCGCGCGATGGTGACACGAGGC 22783 30 100.0 31 .............................. GGGCGAGGATGAGACCGCCGTTCTCGTTCGG 22844 30 93.3 31 ....................A........C TCGCCGATCTGCTGTCCGGCGCCGTGGTGGC 22905 30 83.3 31 ..............G...CA........TC CGGTGTACTTGTCGCCGTGGGAGACGAGCAT 22966 29 80.0 33 ..T.....T.....G........-.A...G CAAAAAAACTTGAGAGTATTAGTTACGTTGAAA 23028 30 90.0 30 ...........A............CC.... GATGCCGTCCCTCATCCTCGGCCGTGCAGC 23088 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ================================= ================== 13 30 92.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CGAGAGCTGGCCTTCCTGCATGACCGCACACGCGTCAATGAAGGCCGCAAGCAGACATACGGCACACAGATCGCCGGCGTGAAAGACGGGGCACCAGTTCCGTGGCCTTGCGACGAGCCGGAACGCATGGACGAACTCCGCGCCGAAGTCGGCATCGAACCCTTCGACGAGTACGTTGCCAAGTTCTCAGTTGCCTGACGCCGACCCCGTCCGGCGGGTCCTGCCCTGAGGCTCACCAGCCATAAGCATGATCCCCCGGGCGGGACCTCCACCGAGCTCCGGGTGAGGTGCAACAAACGCACCACACCCCGGGGCCAACGCCTACGGAGGACAGAGCCTCACTTCTTCCATCGAAGCTGAGCCGGCGAAGCTGGCGGCGGACAGAATGGCATCAGCCGAACCACACGTGACCGCTCTGCGACGGAAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : CATAGATTGCCCCGGCCGCCCCGGAAGGAATGATCAAGAATGCGACCCGCCCGATTCCAGGACTTCGCCGTAGAAGCGCTCGCCAAGGCGCCCGACGTCAAGAGCGTCGAACCGTGGCAGGAGCCGGACCGTCCCTTCGGCGTGCACATCCTGTTCATGAGCGGTGCCCAGATCTGGGCGGCCATCACGGCCACAGCCGCTCCCGGCGAGGACTACAAGCAGCCGGAGAACCCTGTCAGCTATGAAGCTCCCGCCGAGGTGGCGTACCCGGACCTGTATGAGGGCGGGAAGGTCACCCCGCAACTGGCGGAAAAGTACCTTGCCGCAGCTTTCACGAACAGTGGCTCACCGGAGATCGAGTCGGTATACGCCTACTCTGTGAAAGACCCCGCCACCGCTCACCCTGGCCTCGGCCTGCGGTTTCACAGCGAAGCCCGGATCCAGTTGCTGTTCCAGCACACCGCCCGCTCCGGCCAGGACAAGGGCAACTCACCTTTCGA # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : GTGGTCCCCGCGCACACGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 143-2807 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHA01000005.1 Streptomyces sp. NRRL F-5681 contig5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================ ================== 143 30 96.7 31 .............................A CCTTCGGTGACGTCGACGGCCTCGTGAAGAA 204 30 100.0 31 .............................. CAATTACCGTCAGCATGAAATCCCTCCCTTT 265 30 100.0 31 .............................. CTCGCGGCGGTCGCCGCCGCCGTGGCCACTG 326 30 96.7 32 .............................A CTGAACTTCTACCTGCCTCACTGGCTCGCCCA 388 30 96.7 31 .............................A ACGGCCGGGTCTGCCGACAGTGTGCAAGGGA 449 30 96.7 31 .............................T GCACCGCTGACGCCCCCTGTGGAACGAACGG 510 30 93.3 31 ............................TC ACCGTCCGACGCTTTCCGCTTGTCCGAGAAA 571 30 96.7 31 .............................C ATTCCGGGGCGGGCGGGCACTCGGCCAGCAA 632 30 96.7 31 .............................C GGGCACGCCGTACCAGGGCGTGAGCAGCGAG 693 30 96.7 31 .............................C CAGCGGGGCGAACGCCTTGTCGCCCCGCCCA 754 30 96.7 31 .............................C GCATAGGTAGCTGGGGTAAGGGAAGGGGTCG 815 30 100.0 31 .............................. TTTCGGTGACAGTGGTGGGGCCGGTGCCGGT 876 30 96.7 31 .............................T CCGCGTAGGTGTCGGGCTCCTCGGCCTTGAG 937 30 100.0 31 .............................. AGGCCAGGGCGGCCCAGGGGGCAGCGACCAA 998 30 96.7 31 .............................A TGGACGTCGAGGCGGTCTGGACGGCGAGGAT 1059 30 100.0 31 .............................. AGCCCCATGGGCAACTGACGATCGCAATCGG 1120 30 100.0 31 .............................. GGCGCCGGGTGCTGGTCGTGGGCCGGTTCGT 1181 30 96.7 31 .............................C GCCTTACGACCCCTGGAGCACGCCCCGCCCG 1242 30 96.7 31 .............................C GTGGCACCCGAGAACCTGTCGGCTCAAGCCG 1303 30 96.7 31 .............................C GCCTGCCCGAGATCGAAGCCAAGGTCCTCGC 1364 30 93.3 31 ....C........................C CTCCGCCGAGCCGGTACGGAGCCGGTACCCA 1425 30 96.7 31 .............................C GGGCGTTGCCGTCCACCGTCGCGCGCTTCGG 1486 30 93.3 31 ............................AA CCCCCCGGACCGAGCAACCTTTCTCACGAGA 1547 30 96.7 31 .............................A GCACGGCGGCCGGGACACTGCTCGCGAATCC 1608 30 100.0 31 .............................. TCCTGTTCGGCGCTGCTGTGGAGCCCGGAGT 1669 30 100.0 31 .............................. CGAACCCGATCGTCCTCGTCATCACGGCGAT 1730 30 96.7 31 .............................A TGCGTCACATGCGTCATCCATCGTGGTGGTG 1791 30 96.7 31 .................A............ ACGCGCTCGTCTCGCTGATGCGGAACTCCGA 1852 30 100.0 31 .............................. GGAACGGCAGCGCGGTGTCGCTCCGGTACTG 1913 30 96.7 31 .............................T GGACGGCGCCGGATTCGCCGCGCAGGCCCCG 1974 30 93.3 31 ............................TC CTGCGGGGCTCCCGCGCGTCACCCCTTCTGA 2035 30 96.7 31 .............................T CACCCACGAACTCGTCTGCTTCGACCTGTCC 2096 30 100.0 32 .............................. CGACGGGTGGCTACCACTTGGTGATGCGGGCG 2158 30 96.7 31 ............................T. GTCATGGGCCCCGTGGTGGCAGGCGTCTCCT 2219 30 96.7 31 .............................C GGTGGGCTTCCCGGTCGAGGAGGGTGATGTC 2280 30 100.0 31 .............................. CCGGCGGAGGCGACGAGCACCCACGCGGGAG 2341 30 96.7 31 .............................T GCGGACGAACACCACACGCTTTCTGGACTTC 2402 30 96.7 41 .............................C GATGGGGCGTCTCCACCCGCTGGGCCGATTCGCTCGTCTGA 2473 30 96.7 31 ........................C..... TGCCGGTGAACACGTACCGGGTGGAATGCGT 2534 30 90.0 92 ....C...................C....C AGCTCGGGATCGACACAGGCAACCTGGTCCCGTGGTCCCCGCGTGCGCGGGGACCACTCATCCCATCTCATCACCGTGATGAGATGGGATGA 2656 30 96.7 31 .............................A AGCCCACGGCCAAGGTGTTGAGAGCCACCGT 2717 30 90.0 31 ........................CC...T AGGGCGAGCAACGCTGCGTGAGAACTCACGC 2778 30 86.7 0 C..A....................T...T. | ========== ====== ====== ====== ============================== ============================================================================================ ================== 43 30 96.7 33 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GACAATGAGACCTGTGGTGCGCAGAATGGCATCAACCGAACCACACATCTGACCATTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGGG # Right flank : GTTGCAGTTGGGGGTCTATTGGGGGAGGCGTCGTCGCCCCTCGCAGACGGGGCAAGAACTACTGTCTCGGAAAGACAGCGGACACTCCTCCTCTACGGGCCGAATGTTCTGAACTAGGGAGAGCCGCGCTGTTTAGTCCGCACCTCACTCGACACGCCCACTCGCTACAACAAGCCCGACCACTCTCTCACTCTGATAATTTCCCATGCGAGCGGCGTCGACTCGGCCCACTCAGAGTTGAGGCTCCTATCCGATATGGGCCGACTTTCAAGGAGAAACTGTTGAACAGAAAAACCCCGACCACACTGCCGGGTCAAAACAGCAGCCAACCACTGCTTGCTGTCCTGGTCTCAGTGAGGTTGATCGTGCGGCCGACCCTGGCCTCATGGCTCTGCGTCACGCTTGCGGCTATGGCTTTGACCGCTGGCGCACACGCCTGGATGCGATAGACCCGTGCCGCAAAGGGCAGCATGCGTTCTGCTGAGCATGCCTGCGACAGC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 336-999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHA01000044.1 Streptomyces sp. NRRL F-5681 contig44.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 336 30 96.7 31 ...C.......................... CGCTGGAAGGGAACGCCTGATGACCGAGCCG 397 30 93.3 32 ...C.........................T CGGTGGTGCCCATGCGCGTGGTGCAGTCGGGG 459 30 93.3 31 ...C.........................T CGGCGCGGAGGTCGAGGATGTCGACGCGGAG 520 30 96.7 31 ...C.......................... GGTCGATCACGGATGTGGCGACCCGCCCTTA 581 30 100.0 31 .............................. TGCCGGTGGCCTTCTTCCTGCCGGTGGGGGC 642 30 100.0 46 .............................. TGCCGGGTGGTCCCTACTGCTCGTACGACTTCGCACCCACCAGCCG 718 30 100.0 28 .............................. GGCCGTCGGATCCGACGCCGAAGCCGGT 776 30 90.0 31 CA...........................A GGGGGTCGGCCCGGTCGTAGGTCTTGCACTG 837 30 96.7 42 ................T............. GGTTCGTCGTGCCGTAGTCGACCCCGACCCAGTGCCGGCGCA 909 30 93.3 31 ............................TT CTCCGTGGCAACCTGACCCCACTCACGGCCT 970 30 86.7 0 ...........T...A.........C...T | ========== ====== ====== ====== ============================== ============================================== ================== 11 30 95.2 34 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : TCACGGCGGCGAGTCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCTCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCGCCCCAAGAACCCCCGTTAGGCAGAACAGACACACCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGGCCCAGACAGGACCGGCGGCGGGCAGAATGAGCATCAGCCGAACCACACGTGACCACTTTGCGACGGAAGGCGAGATATGCCGGTTCCTCAAGAAGTAAGCAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGTCACGAAGGG # Right flank : TGCGCCCCGAGCGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGTCCGGGTCCCGCAACCACACTTGCTGACCCCGGCCAGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAACAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //