Array 1 56856-56231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYGX010000007.1 Lactiplantibacillus pentosus strain 1.2.13 assembly_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 56855 36 100.0 30 .................................... GTGTATAACGTTTCAGATTAAGCTACCACT 56789 36 100.0 30 .................................... GATCTAAGTCATGTCGCGGGGTGGTTTTTC 56723 36 100.0 30 .................................... ATTTACAATTGTAATCAGGGTACGCGCCGT 56657 36 100.0 30 .................................... TGGCGCTGAAGCTGCGGAACTGGTTCACGG 56591 36 100.0 30 .................................... TAATTATTTGCAAAGTGGCTGGTGTAGACC 56525 36 100.0 30 .................................... TTTCCCGTTCAACATAGAAGTGTAAAGTTT 56459 36 100.0 30 .................................... CCTTGCTGACGGTAAACAGCGCACCAGATA 56393 36 100.0 30 .................................... TTTACCTGCCGTATACGCCTGATACTCCAT 56327 36 94.4 25 .......................G..A......... AGGATCGTTTCGACCTGTCATCCGG 56266 36 72.2 0 ....C.G.C...G.....T.T..G...T.G.....T | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 96.7 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCCGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGAGCCATGATTGCCAAAGTAATGGAAGCCAGTTTTCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTGGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGACATCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGAATTTAGCAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : AACCCCCGTGTTACCGTACATCTTGAATAGTAGTCACTCCCCCTCAACCCCAGGCCCACCAAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTCGGTAAACCAAGTGCGGTCAAGTAGTCGTAGGCGAAGATTCCGAGTCCTGAAATCAGGAAGGAAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 2256-1758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYGX010000024.1 Lactiplantibacillus pentosus strain 1.2.13 assembly_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 2255 28 96.4 33 ..........T................. TTAGTGGCGTTGTTGAGCGATTGCGTTAGTTGG 2194 28 100.0 33 ............................ TGTGATGCTGCAAGGCTGGCGGTTCAAGTTCCA 2133 28 100.0 33 ............................ CTTCAATCTGTGGACGTTAACGATCGCCCAATT 2072 28 100.0 33 ............................ TAAGGAGGTATTCCAGATGTACGCAGTTAAGAC 2011 28 92.9 137 ..T..........G.............. TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTTGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAAAAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 1846 28 89.3 33 ..A.........C..A............ TCCAATGTGACTAACTGAAATTTCTACGCTAGT 1785 28 78.6 0 ..A.......T.C..A..........TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 7 28 93.9 50 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : TATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATGGATTTTTTAAAATTCCGGATATAGATCAAACATTCACGCCTATTAAACGTTGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTTGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGGCAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATACCCTGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTAAAAATTAGCAGAATTATCTGGGAAGATTCAGTCCTTGATAAGGACAAAAATCACGTGTTTACAAGATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTGTTTTTGTAAATTCACGGCAAATTTTGAGTAAAAGAAAAGTCATACCATATTTAGAGAAAGTCTTGTTACAGTTTCTATAGATAATGAGAACTGTACCGCGTGACCTTTACGCTTGAAAGTGCAAAGAAAGAATTTGTA # Questionable array : NO Score: 4.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-1.77, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15665-16295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYGX010000035.1 Lactiplantibacillus pentosus strain 1.2.13 assembly_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15665 36 100.0 30 .................................... CGGAGTGGCCTTTTTATTTATTTGATTGCA 15731 36 100.0 30 .................................... TGATGTTTTAGGCGACTTTACCGTGTATAA 15797 36 100.0 29 .................................... AAGGGCTTGTTTTCCAAGACGTCAGGCTT 15862 36 100.0 30 .................................... CAGTCATTTTCGTTTGAGCAACGCGAATTC 15928 36 100.0 30 .................................... CAGTCATTTTCGTTTGAGCAACGCGAATTC 15994 36 100.0 30 .................................... TAAATAAGTGTTGACAAAGGATATCAGAAA 16060 36 100.0 30 .................................... GTCGGAGGCGTACAAGAAGCGTGTGGCTGG 16126 36 97.2 30 ..........A......................... TGGTGTTGAATTACAAGGTGCTGGTAAGTA 16192 36 100.0 30 .................................... CAAGTTTAACCATGAAAGTATTTCTGATGA 16258 35 88.9 0 ........................-...G..T..T. | GGC [16278] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.6 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : TAGTGATGGGGTGAGTGAAAAGCATAGTTCCGGGATTTACAAGCAACTTGAAGCTGTATTGACTGATGATCAGCGTAAATCCATAACTGACATGAACAGTCAGTTATATACCCTTGTTCAGCAATGCTTATTCATGATTGATCTACCCTTGGAAGTCACTTATGATTGGGATTTAAAGAAGTTGTTCAAGTACTGCAAAATTCATTTTAATGCTGATACCATGCAGAACCCATATGCTATAATTGAATCAATTATTAAAATCCATTTAGAGTGTGGACTCAAGTCTGCGGTTGGATTAACTAATGTCGCTCATTATCTTAATCAGCAGCAAATAGCTGACTTATCCAAGCTCACAATTTCCACGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACTAATTGCGACTTCTACTACATTGACGAGGACTTTGTTGATTGGCATTCATAGCACATTAAAATCCGGTTATAAAAAATCG # Right flank : CTAGTGGCCGTTTTTAATTTCGTGATGTAACTAGATTTATAGATGTTCATTAGGAGTTTCCAAATTAGACCCTGTAACAGGAATAATAGAAAATGGCAGTGACACAACTTAACGGTAACGCCGAAAGCAGGTAAGGAAAATGAGTTTAAGAGCCAGCAAACGAAAGTCCGGTTTGCGGCTAGTTTGTCAAAGGATAAGACCGATAGTGAGTTAACTAAGAAAGATAACGATTATACCTGGTCAAATAAGATGACTAAGGGCGATAAACCATCAAATGATGTGGCTTATCATTCAGAAAAGGACCCGGACTTGATTGTGAAAAAGGTTGAAACACAAGATGGTAAGTTAGCTGACAACGTGGCCAATGCTAATATTATCAACGCCAAAACCGTTCCTTTCAACATCTTTAATCAGTATAACAATTTAGGTGAAACCCAATATATGACTGATACCGACGGATAAGGCCGATAGTGAGTTAACTAAGCAAGGTCAGACTTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 32206-32843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYGX010000030.1 Lactiplantibacillus pentosus strain 1.2.13 assembly_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 32206 28 100.0 33 ............................ CATTGGGCAGTTCGCTGGTTTAACATCTCAATA 32267 28 100.0 32 ............................ CAATATGATAAGGTCGACAACTACCGCCACGT 32327 27 96.4 33 .....................-...... TGACTGATGTACGAGGTATCAAGCGAATTGTTA 32387 28 100.0 33 ............................ CTTGTCCAATCAATAAACCTATCGTATCAGTTT 32448 28 100.0 34 ............................ TGGAGGACAAATAGCCTCACTGTTGCTTGGCCGC 32510 28 100.0 33 ............................ TGAGTGACGGTAAATTAAACCGCGCAACTATCA 32571 28 100.0 33 ............................ TATCAGCGCTAACTAATGCAAACCGCTGCTTGG 32632 28 100.0 33 ............................ TGTAAGGGTCGTCAGTTTGTGAATAATCTATCA 32693 28 100.0 34 ............................ CCAAATTTCGCCAACCATTGCGACGATTGCTCGC 32755 28 78.6 33 ..A.C..........A..A..A.T.... TGACATTTATTTCATTGCACAAGATTCGAGAAT 32816 28 78.6 0 .....T....C..G..TA........T. | ========== ====== ====== ====== ============================ ================================== ================== 11 28 95.8 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : AATCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGAATTTTTGGCTAAATTGCCACTGTTTGATGGAAATAGCTCAGAATAATATAACTAGTAGTAGCGAACCGCGCCGCAGAAACAGATTTAACGGTAATTTTGTAGCCATTTTTGGCTTTATCGGTATTGTATGACCATTTGGACCGGTTAATTATAAATTCGTTTATACGGCAATTTTGAGCCGAATTCGTGCGATTCGTTAAATCTTGAGAAGCGATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACGCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCGACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAAGATGGAAAAAGTGCTTCATATCCTATAGTTGTTCCCCGGGCATGGGGGTAATCCCTAAAAGCCCGCGCTATTAACGAAAACATTACCGGCTCTGTTCCGATACTTCATAAAGATTCTATCAACTCCACTTGACGGGGAGCCCGATTACCCCTGGTCGCCTCACCTCTCACAGTCATTCGCAAACTCGGCGCAAGGTAATTTAGAATCCAGAGCAAAAAAAAACGCCATATCCGAAGATATGACGTTTTTTTAAGTATCGAAAGCTATTCAAGATAGCTTATTGATACCGGCGATCGGGGTCGAACCGATACTCCCTCAACGGGAACTGGATTTTGAGTCCAGCGCGTCTGCCAATTCCGCCACGCCGGCAAAATAAAATGGGTGAAACTTACTGATCAGGATTATAACCTTTTCAGGAAAGGCGGTAACCGGATTTGAACCGGTGATGAAGGTTTTGCAGACCTCTGCCTTACCACTTGGCTATACCGCCATCATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //