Array 1 25155-26078 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUEJ01000176.1 Pseudomonas aeruginosa isolate 30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25155 28 100.0 32 ............................ AGGTCCTGGGGCTTCTGCAAGTTGACGTGTGT 25215 28 100.0 32 ............................ TCGGCCAACAGCCTCCACAAGGGAGGGAGGGG 25275 28 100.0 32 ............................ ACAACGCCTTCGAAGACCTGGGCGGCTTCGTA 25335 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 25395 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 25455 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 25515 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 25571 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 25631 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 25691 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 25751 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 25811 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 25871 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 25931 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 25991 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 26051 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 36723-34953 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUEJ01000176.1 Pseudomonas aeruginosa isolate 30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36722 28 100.0 32 ............................ ATTCGAAGAGCGGACGTCCGGCGACTTCTGCC 36662 28 100.0 32 ............................ CGGAAAACTCGCCGGCCAGCGTGTTCTTCAGG 36602 28 100.0 32 ............................ TGGACGAACCGCAGCAGCGGTACGACGTTGTT 36542 28 100.0 32 ............................ TTGATAGGCTCGTACTCAGGCCCGGAAAACTC 36482 28 100.0 32 ............................ AAGGCCCTGGCCTATATCGCGGGCGGCCTGAC 36422 28 100.0 32 ............................ AGTCGCTCCGCTGGGACCTGGAACAGGACATT 36362 28 100.0 32 ............................ TGTATCCAGAAGGGGGCCGAGGTGATGTTCAA 36302 28 100.0 32 ............................ TGGGCGACGTGGTCAAGCAGCGAAGAGGCAGA 36242 28 100.0 32 ............................ AAACCGGGGGCGCGGGGAGCTTGTCCGGCTCG 36182 28 100.0 32 ............................ ACGCTGAGCTGTAGAACCGGCTCGTTGCGACC 36122 28 100.0 32 ............................ GCATCATGTACGGCAGCGAGATGCCGTCCGTG 36062 28 100.0 32 ............................ TGGATGGTGATGTAGTAGGTGTCGCCGCCGAT 36002 28 100.0 32 ............................ AGTGGGTCAACTTCACGCCAGCACCGTCGCTC 35942 28 100.0 32 ............................ TTCGAGCCGAGCGGAAGGTCGCTGGTGTCGTA 35882 28 100.0 32 ............................ ACAGGGTGTTGTCGTTACTGCGCCAGGTTGGA 35822 28 100.0 32 ............................ TGCGTAACCAAGTGCATTTCATGGCCCTGATG 35762 28 100.0 33 ............................ CAGGAGCTGCTTCCGCCGCAGCTTGCTGCTGTT 35701 28 100.0 32 ............................ GTGGGGGCCATGCGGGGTGAGAGCCACTCCAG 35641 28 100.0 32 ............................ TTCGTCGTCGTTATCACGCCGCCGGCCGCGCG 35581 28 100.0 32 ............................ TTGAACCCCAGGTCGTTCTTCGCCAGCGCATA 35521 28 100.0 32 ............................ CAGTCGATCAGCCCAGCCAGCTTGGCGTCGTT 35461 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 35401 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 35341 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 35281 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 35220 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 35160 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 35100 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 35040 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 34980 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAGAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 376869-377976 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUEJ01000080.1 Pseudomonas aeruginosa isolate 30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 376869 28 100.0 32 ............................ GTACCGCTCAGCGGCGAACCGATAGGCACCGG 376929 28 100.0 32 ............................ GACTTCTGGCTGTTTTCCATGCGCACCAGCGG 376989 28 100.0 32 ............................ TTCCAGGCCAGTTCCACCACCGGTACCACCGC 377049 28 100.0 32 ............................ CGTTCCAGGCGTGCCGCCACCACCATCGCCAC 377109 28 100.0 32 ............................ TCGATCAGCGCCGCAGGAAGCCCAGGACCACC 377169 28 100.0 32 ............................ AATTTCGAACAGCCGACTGATGCCATCATGGC 377229 28 100.0 32 ............................ TGGCGCGAAGCCGAGCAGCAATGCCGCGACGG 377289 28 100.0 32 ............................ GGCGTATCCCGATTATCGGTTGAGGTGATGTA 377349 28 100.0 32 ............................ AGGCCGGCGCCGATCTGCCCGCGACGAGGTAC 377409 28 100.0 32 ............................ TCCACCGGGTTTTTGTCAGTCCATCCGGCCGC 377469 28 100.0 32 ............................ TGTTCCGCCAAGCGCTACCGGCACCGTGTCGC 377529 28 100.0 32 ............................ TGGGTGGCGTGCCTGCTCAGTGGCTCCAGGTC 377589 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 377649 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 377709 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 377769 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 377829 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 377889 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 377949 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //