Array 1 275-1164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRT010000004.1 Listeria booriae strain FSL L7-1430 NODE_4_length_324877_cov_57.675523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 275 31 100.0 34 ............................... ATGTAACTTATGAGATAGGAGGTGTTCAGCTTTG 340 31 100.0 34 ............................... CTATTATTAAAAAGTTAAAAGTAGAAAAAGGAGA 405 31 100.0 34 ............................... TCAAAAGTTGATCCAAATTTAGCAAGTCTAGCAG 470 31 100.0 36 ............................... TCTTCTTCGTTAACAACAATGTCATACCCTATTTTA 537 31 96.8 37 ..............................T GATTCTATAAATCGTTGGCCGTGTTACGCGATTCTTT 605 31 100.0 36 ............................... CATCTTTGATTTAGATATTAATGGTGTAGAACTAAC 672 31 100.0 39 ............................... CTGCAAAAGATGGTTCACAGACGATTCAAGACGACTCAA 742 31 100.0 35 ............................... CGCCAGATGGGAGAGAATTAGACGAAATCATGTTA 808 31 100.0 35 ............................... CAATAGTCTTAGTCTGCTTATCCGCATTTAAAGCA 874 31 100.0 34 ............................... CGTTTGCACCTACCATCAAACCTTGAGGGCCACC 939 31 96.8 34 ..............................T CAGCTTATTCTTTCCGTTATAAACGACAATAGCA 1004 31 96.8 33 ..............................C AGCCAGACGGGACAAAGATTAGATTTGCTATTT 1068 31 100.0 35 ............................... CTATCCTTATGTCATTAATTTCTTCACCAGAAAAG 1134 30 87.1 0 .................A..-...C...C.. | G [1161] ========== ====== ====== ====== =============================== ======================================= ================== 14 31 98.4 35 GTTTTTATCTAAGTAATGTGAAATGTAAATA # Left flank : TCGGATTGGGTTTGGTCACTTTTATCTTAAAGGATGTTGATATTACTGTGTATTTTTTTGTCTTGAAACGGGAACAAAAAAAGGTTGAGGTAGATTATTTTCTACCCCAACATTTATTATAGAGCCATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCTG # Right flank : AGATTGCTCACAGATCCAGTGCTTCTATCCATTTTTTTATAGAATCAATAACTAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGGTTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCCGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGATACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGTTATCCGACTGATGTGGAGGAGCTTTACTTGGCAGAGGACGGGTTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGATGCTCCTGTTTCTGGTG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 273173-272550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRT010000001.1 Listeria booriae strain FSL L7-1430 NODE_1_length_598443_cov_59.102501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 273172 30 100.0 36 .............................. ACGCTTTCAGCCCCTGATTTTCCACTTTGACTTACG 273106 30 96.7 36 T............................. ACAACAAACGGTACAAAACATACACGGGAACGTGCT 273040 30 100.0 35 .............................. CAATTTCCATCATCAGCATTACAGTTAGCAGTAGC 272975 30 100.0 37 .............................. GCCGGACTGGCGTTTAACAATGATGAAGTCATTCAGT 272908 30 100.0 36 .............................. AGTGCATCAAAATAACGAGATGTTACGTAGTCTTTG 272842 30 96.7 36 .C............................ CACAGCCTTAGAGGGATTGAGAGACAAGGAGTGTAT 272776 30 100.0 36 .............................. GCGGAAGAGGCAAAACTTAGTGTTATGCGCCTTGCG 272710 30 100.0 35 .............................. ATTGCCGATCTAAATTCTGATCGGTGGAACTTACC 272645 30 93.3 36 ..........................G.G. AAGGACAAAGGCCAAACGGTACACTTTACAAACTCG 272579 30 80.0 0 .......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 96.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAGCTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGTGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGCATTGGTATTAAAGGGTTTAAACCTGTTTTCGGAGTTTGGATTGTAAGGTTGGAGAGCGGAAATTTAGGTTTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCTGTCTACCAAAGCAATGTTCGTAGCCAATGTCCTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCGTGTTTCTGAAT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 403833-404066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRT010000001.1 Listeria booriae strain FSL L7-1430 NODE_1_length_598443_cov_59.102501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 403833 35 100.0 31 ................................... CCACTTGTAGGCGGATATCCTAAATTGATAA 403899 35 100.0 31 ................................... CCTGCTATTCCAACAGGTGATTATCGCTTTG 403965 35 97.1 31 ..............C.................... CATTAGGTAATTTTATAAAACACACGATGGG 404031 35 82.9 0 A...............A.........TG.A..C.. | A [404059] ========== ====== ====== ====== =================================== =============================== ================== 4 35 95.0 31 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAAT # Left flank : GTTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTTCGATAGTTCTTCCATCAACTCTCTTTTTGGTTATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATTCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : TATCTATTTTACTTTCAACAGTTTAACTATACCAGATTATTAGTAACTCTGCATCTTCGCGTAATCACGCGTACTAAATAATAATTTCCCGTACTAAATCAACAAAAAACACCATAAACCGCATCTTACACAGCGATTTACAGTGTTTTCCGTTCTTTCTAAGCGGAGAAACGGGGATTCGAACCCCGGCGCGGCCGGAACCGCCTAACAGATTTCGAGTCTGTCCCCTTCAGCCGGACTTGGGTATTTCCCCAAAATGCAATGTTGTTGTGGCAGGCCTAAATGGCTTGGCTTGAACAATTACAAGTTCCATTCTAATGCATTTTTTTCGAAAAATCCAGTTTTTTATTTAATACGCGTCATAAAAATCGCTGCGCATGTGGGGAATTACTTTTTCCCAAGCTTCGATGGTTATTTCACTGGCTTGGGCTTTTTCGTAGTAGACGAGGTCTCGTGGTCGCACAAAGCCCATCATCATTTGTCCTAAGCCTTGAATCGTA # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //