Array 1 3-1525 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIQ01000079.1 Acinetobacter baumannii strain ABOB01 contig-2000065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 63 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 123 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 183 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 243 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 303 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 363 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 423 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 483 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 543 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 603 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 663 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 723 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 783 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 843 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 903 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 963 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 1023 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1083 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1143 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1203 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1263 28 96.4 31 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTA 1323 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1378 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1438 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1499 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 97.8 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TAG # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 68837-67968 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIQ01000098.1 Acinetobacter baumannii strain ABOB01 contig-3000028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 68836 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 68776 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 68716 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 68656 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 68596 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 68536 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 68476 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 68416 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 68356 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 68296 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 68236 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 68176 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 68116 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 68056 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 67996 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 15 29 96.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1711-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIQ01000111.1 Acinetobacter baumannii strain ABOB01 contig-4000074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1710 28 100.0 32 ............................ ATCATCGTAAGCATTGAATCGCGTGCCTTCAA 1650 28 100.0 32 ............................ AATGAGAAGAAAGTGGTTGCTATCGACTTCTT 1590 28 100.0 32 ............................ AATATGCTCGAATGAATTCCTTGTAGCATTCT 1530 28 100.0 32 ............................ AAGAACTGTGCGTCTTGGCGGTGGGAAAATCA 1470 28 100.0 32 ............................ ACTCCATAATTGCAGGTGTTGAAAGCTCACCG 1410 28 100.0 32 ............................ TTCTTGATCATCGTTATGTAAAAACCATTCCA 1350 28 100.0 32 ............................ AAGAAAAGTATGAACAGCAACTTATAGAAAAA 1290 28 100.0 32 ............................ GATGACCGTACCAACTGGATTTTGATATTCAT 1230 28 100.0 32 ............................ TTGTTGTGTATATAGGTTTTGCAGCTCATCTA 1170 28 100.0 32 ............................ TATAATCGAAAAACATCCAAAAGCGGGCAAAA 1110 28 100.0 32 ............................ AAAACGACCTTGTGACTCTGTGAATTCAATCT 1050 28 100.0 32 ............................ AGTTGCAACTTTAACAACTGACGGTACTGCTG 990 28 100.0 32 ............................ ATAGTGGAAATACACGTAAGTTATTGATTTAT 930 28 100.0 32 ............................ TGTTGTTAGGGCTATTTCTGCTTTATCCGATA 870 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 810 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 750 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 690 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 630 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 570 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 510 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 450 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 390 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 330 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 270 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 210 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 150 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 90 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 29 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6801-12170 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIQ01000111.1 Acinetobacter baumannii strain ABOB01 contig-4000074, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6801 28 100.0 32 ............................ TTCTTCTCTCTGATTACAAGCTCCCTGGGGCA 6861 28 100.0 32 ............................ ATAAGGACGATGCAAGTGATAGTGCTCACCGA 6921 28 100.0 32 ............................ ATGCAGATAAAACAGTAAAACTCTATGAAAGC 6981 28 100.0 32 ............................ ACTGGTTAATTTTAATAATGCGGATGGATATT 7041 28 100.0 32 ............................ TCTTAATCTCTTCAATGTTCATCTTCAACCCT 7101 28 100.0 32 ............................ AAAACGTTGAACATTAGTAAGTGTTAGAACAC 7161 28 100.0 32 ............................ TTACGATGGCCAACAGAAATATTAGACATATA 7221 28 100.0 32 ............................ GATAAAGGTTGTATGCGCTCTAAAGCGTTAGT 7281 28 100.0 32 ............................ AATCCAAACAGCAAAACCGATGATACCTGCAA 7341 28 100.0 32 ............................ AGTGGGCTTATATCTCTTCTATAAAAAACGGA 7401 28 100.0 32 ............................ AATGCTGCTGTTGACGTGGCTGGTCCAGTTGC 7461 28 100.0 32 ............................ GGAGTCAGGCACACTATTAGATAGCAGTGTGC 7521 28 100.0 32 ............................ ATGATGAACCTGTCTTACCTTCAGATCCTTCT 7581 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 7641 28 100.0 32 ............................ TCAAGTGCAGATGCAGCCTAATTATTCTTCTT 7701 28 100.0 32 ............................ AAGAACGTTTGGCAGCAAAAGGAACATTACCA 7761 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 7821 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 7881 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 7941 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 8001 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 8061 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 8121 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 8181 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 8241 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 8301 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 8361 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 8421 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 8481 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 8541 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 8601 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 8661 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 8721 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 8783 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 8843 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 8903 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 8963 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 9023 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 9083 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 9143 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 9203 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 9263 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 9323 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 9383 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 9443 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 9503 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 9563 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 9623 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 9683 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 9743 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 9803 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 9863 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 9923 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 9983 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 10043 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 10103 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 10163 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 10223 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 10283 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 10343 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 10403 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 10463 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 10523 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 10583 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 10643 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 10703 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 10763 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 10823 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 10883 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 10943 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 11003 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 11063 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 11123 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 11183 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 11243 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 11303 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 11363 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 11423 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 11483 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 11543 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 11603 28 89.3 32 ....T.......AT.............. TGCAGCTACTCGACATGTTGGTAGGGCAGATG 11663 28 89.3 32 ....T.......AT.............. CAGTCGGCTGGTGCTAATTGAATAAAATCGTT 11723 28 89.3 32 ....T.......AT.............. AGATTGAGGCGATTTTTATCGCGGACATTGCC 11783 28 89.3 32 ....T.......AT.............. CAGTCCCCGCTTTGAAGCATTCCCATCAGTAC 11843 28 89.3 32 ....T.......AT.............. TCACAGCTATCGTCTGGCTGCCGTCGCGTAGA 11903 28 85.7 32 A...T.......AT.............. TTATTATTAAACGGGAAAAGTATATTCTTGCT 11963 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 12023 28 89.3 32 ....T.......AT.............. TGCAGCTACTCGACATGTTGGTAGGGCAGATG 12083 28 89.3 32 ....T.......AT.............. CAGTCGGCTGGTGCTAATTGAATAAAATCGTT 12143 28 89.3 0 ....T.......AT.............. | ========== ====== ====== ====== ============================ ================================== ================== 90 28 95.2 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //