Array 1 492950-490867 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035306.1 Streptococcus thermophilus strain IDCC2201 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 492949 36 100.0 30 .................................... AAGAGGTGCTTCTGTTATGCTTCCATCTTT 492883 36 100.0 30 .................................... TGTCTGAGTGCCACCAAAACTTGCTGCATT 492817 36 100.0 30 .................................... TCATCCCAATATTTTGCGATATAGGATGGT 492751 36 97.2 30 .........T.......................... CTGACGTTCTAGTTCAGCAGCATCAGCGAT 492685 36 100.0 30 .................................... TTCAGTTTGGCTTTTTATTTTAAAAAACAT 492619 36 100.0 30 .................................... GAAAATCGCTAAAGAAGCAGTTAAGAAGTT 492553 36 100.0 30 .................................... TGTGGCGCTGTCCTATGACCGTACTGGTCT 492487 36 100.0 30 .................................... GTTGACAGTTAAATATAGCTTTACAGGAAA 492421 36 100.0 30 .................................... GTCTTCTAATACAGAAACACGTTGTTGACT 492355 36 100.0 30 .................................... CCCATGACATCAAGATGATATCCCCTGTCA 492289 36 100.0 30 .................................... AATGAAGAAGCCAATTCAAGCGCAAGGGTC 492223 36 100.0 30 .................................... CGAAATAGACGCTTTAAGCATAATGGAAGT 492157 36 100.0 30 .................................... GCTCTTGGCTCAGCTCACAAAAGAATAGTT 492091 36 100.0 30 .................................... CTCTAGCACGCTAGTATGATCGTAATGACC 492025 36 100.0 30 .................................... TATAGAATACAAGAAGATTAAAACAGTACT 491959 36 100.0 30 .................................... TGAGATTGGTGCCTTAACACAAGATAAATT 491893 36 100.0 30 .................................... AACTACTTAGGAACAGTAGCGAGGGAGATT 491827 36 100.0 31 .................................... CCTTAAATGCCAACGGAATCCTTAAGATTAA 491760 36 100.0 30 .................................... CTTCGGTGTACACGCTCATTTCAATGGTTC 491694 36 100.0 30 .................................... CTAAAGAGCTTCTACACGTAGCTAGCAAGT 491628 36 100.0 30 .................................... CTTTCCAAACGTTACGATTTGATGTTGGAT 491562 36 100.0 30 .................................... AGCTATCTCCATTAGTTCTTGACGTCCCTT 491496 36 100.0 30 .................................... TCTTTTTCAGCAAACCATTTCTTAACACCT 491430 36 100.0 30 .................................... TGAAGAAATAGTCATGATGAACCCAGTTAG 491364 36 100.0 30 .................................... AATTTTAACAGATATAGTGTAATCGGTATT 491298 36 100.0 30 .................................... CTATTACTATACTTCCGAAGAGATTGCAGA 491232 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 491166 36 100.0 30 .................................... TTATATTTTTTTAAGGCGGTCAGTTTGGTC 491100 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 491034 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 490968 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 490902 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1580024-1581445 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035306.1 Streptococcus thermophilus strain IDCC2201 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1580024 36 100.0 30 .................................... CATAATGATCGTCTTGACAAATATCAAGAA 1580090 36 100.0 30 .................................... TCTCATCGTTTGCTAGTGACAGTGTTAGAA 1580156 36 100.0 30 .................................... CAGCACTAGCCGCAAGCCCTTGTATATTAA 1580222 36 100.0 30 .................................... TAGAAATCAAGGAACTTGGATGAAAAGTAA 1580288 36 100.0 30 .................................... ATATGAAAGGGAAATGATATGAAGAATGAA 1580354 36 100.0 31 .................................... TTTTGGGATACAACACGCAGTCGTTGACTTG 1580421 36 100.0 30 .................................... GTTTGAGATGCCAATGTTTTTCAATCCTTG 1580487 36 100.0 30 .................................... GTATCAAAAGACGCATTCATGAAGCGAGCT 1580553 36 100.0 30 .................................... AAAAACAATTGAAATTCATAATCAGCGCTT 1580619 36 100.0 29 .................................... GCTTTTAACGTTTTAAGAGAATACCCTCT 1580684 36 100.0 30 .................................... GTGACGCTGCAATGACTTGCCATAGTAATT 1580750 36 100.0 30 .................................... ATACTGGTATATAGTAATTCATACTTCATC 1580816 36 100.0 30 .................................... TTGGTTTCATATTTACTCCTTTGTGTTTTG 1580882 36 100.0 30 .................................... CTGATTTGGTCTTGTTCTTTTGTCCCTTTT 1580948 36 100.0 30 .................................... GCAGCAGTTGAGAACTTTAGCGTCCAGTGG 1581014 36 100.0 30 .................................... TGCTACTATGAAGGACGCTGTTGATACTTT 1581080 36 100.0 30 .................................... TCTTCTTTAATCTTTTTTAACGTCAACGTT 1581146 36 100.0 30 .................................... GTATCCATTAATATAGTAGCATTTCTATCA 1581212 36 100.0 30 .................................... AGTAGAGAGACCAGCACACTACTGTACTAC 1581278 36 100.0 30 .................................... CTTCGCACGAAAGTTTATTAGACAACTCGC 1581344 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 1581410 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //