Array 1 5320-5958 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSX02000006.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0372 NODE_6_length_238826_cov_21.838308, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5320 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 5381 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 5442 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 5503 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 5565 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 5626 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 5687 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 5748 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 5809 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 5870 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 5931 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22710-25606 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSX02000006.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0372 NODE_6_length_238826_cov_21.838308, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22710 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 22771 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 22832 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 22893 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 22954 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 23015 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 23076 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 23137 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 23198 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 23259 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 23320 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 23381 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 23442 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 23503 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 23564 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 23625 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 23686 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 23747 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 23808 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 23869 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 23930 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 23991 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 24052 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 24113 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 24174 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 24235 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 24296 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 24357 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 24418 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 24479 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 24540 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 24601 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 24662 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 24723 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 24784 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 24845 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 24906 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 24967 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 25028 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 25089 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 25150 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 25211 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 25272 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 25333 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 25394 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 25455 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 25516 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 25577 29 96.6 0 ............T................ | A [25604] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //