Array 1 108755-109084 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJAA01000022.1 Azotobacter chroococcum strain ATCC 9043 NODE_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 108755 29 100.0 32 ............................. CGCGAAGTCGGCCATCTCGCGGTGGTAGAGCT 108816 29 100.0 32 ............................. GCCATGAACGGCGTCATCGCGTACAGCAGCCA 108877 29 79.3 89 ..............C..A......GTT.A ACGAAGGTCTTCGTCGGACTTTCCGACGAATGGCATCTCTTTGCCTGTCCCGGCCAGTGGGGGCTGTAACCCTGCCAATATATTCTTTG 108995 28 86.2 32 ..TA......-.................T GGACAACCTGCAACCGCGCAAGTAGTAAACGA T [109007] 109056 28 75.9 0 .C.C.......-.T.......CA..T... | C [109071] ========== ====== ====== ====== ============================= ========================================================================================= ================== 5 29 88.3 46 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : CAGGATCATCCCGACCACCATCGAGGAGGTACTGGCCGCCGGCGGCATCGCCCCGCCCGAGGCGCCGCCGGAGTCCGTGGCGCCGGCCATTCCCAACCCGCAAGGCATCGGCGACGCCGGGCACAGGACGCAGTGATGGCCTTCGTCGTCGTGGTCACCGAAAACGTCCCGCCGCGCCTGCGCGGACGCATGGCCATCTGGCTGCTGGAAGTGCGCGCCGGCGTCTATATCGGCGACGTATCCCGGCGCACCCGGGAAATGATCTGGCAGCACCTGGCCGAGGGGCATGAGGACGGCAATGTGGTCATGGCCTGGGCGAGCAATCACGAGTCCGGCTACGAGTTCCAGACTCTGGGGGAAAACCGGCGTTTGCCGGTCGAGTTCGACGGCTTGCATCTGGTCGCCTTTCAGCCCCAGGAAAAGCCCGATCTTTAACAAGGAAAATCGGTAGATTCTTGGCGGCCGATTTTTTCCTTTTGAAACAATCTGTTACGCTAAGT # Right flank : GCAGGTCCGGCGCGATCGGGCATGGCCGCTCAGGCGGTCTGCCCGATTCGCTTTTTTCCTGTCTCCCGATCCCTTGCCGATGGCGTCGCTCAGCGCGGGCCGATTTCCCGGTGCAGGGCGGCGAGGCTGCGCTGGTGGGCGAGTTCGGCCGCGGCCTGATCGTAGTGCCGGCTGCCTGTGCGGGCGAAGGCGTGTTCGCAGCCGGGGTAGCTGTACAGCTCGATATTGGGTCTGCCGCCCAGGCCTGCCAGGATCGCGGCGCGGGCCTCGGCGATGTGCAGCACCAGCCGGCCGCGGATGCCGGCGGCCTCGTCCAGCAGATGTTCGATGCCGACCCCGTAGTAGCCGACGGCGCAGGCGACGTCGCTGCGGGCGGCCGTCAGATAGGCGAGCCGGCCGCCGCGTCCACCTCGGGCATCCGGCGCGTCGCCTCAAGGGTGGCGACGATGTCCGCGATGCCCTTGTCGACGTCGAACCGGCCGAAGAGGGCGAAGGCCTTT # Questionable array : NO Score: 3.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-2.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3801-2572 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJAA01000064.1 Azotobacter chroococcum strain ATCC 9043 NODE_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3800 28 100.0 32 ............................ ACCTTGCTGCGCTTCGCCCAGTGGGTGCGGGC 3740 28 100.0 32 ............................ GCCTCGCTTTCAGATCGCGCATCCCGCACCAC 3680 28 100.0 32 ............................ TTGCTGATTCCGTCGGCCAGGCGCTGACGCTG 3620 28 100.0 32 ............................ TGGACGGCAGACCCGGGTCAGTCCTCCGGCAT 3560 28 100.0 32 ............................ TTTCGTTATCGTTGATATTTGCCTGCGCATGT 3500 28 100.0 32 ............................ CTCCCAAGAGGGGGCCGGGCCGGTTAAACGAA 3440 28 100.0 32 ............................ AGCTCGGTCCCTTTCTGCATGCTGGTAATTTC 3380 28 100.0 32 ............................ GCCAAGGAATCCATGATGAAATTCTGCGTCAC 3320 28 100.0 32 ............................ CAGAAAGCCATCGAACGCCCAGCAAACAACGT 3260 28 100.0 32 ............................ CAGGGCAGACGCTAATCAGCGCCTGCGTTTAA 3200 28 100.0 32 ............................ TACAAAACCGCGCTTCACTCCAGCACCGCCCC 3140 28 100.0 32 ............................ TGGAGACGACCCCGATGGGGAATGGTGAGTTC 3080 28 100.0 32 ............................ GTCAACGTACAGAAGAGGTTTCATCAATGTTT 3020 28 100.0 32 ............................ CTTGAACGTACCTCGACAGAAACAGGCTCACT 2960 28 100.0 32 ............................ AGTCTGCCGTGATTGAATATGCCGCGTTCGAC 2900 28 100.0 32 ............................ ACCCTGGCGCGGGTCAGGGCCTCGCCCATCTG 2840 28 100.0 32 ............................ ACTCCCAATTGAGTTTGCCGCCGGATTGGTCG 2780 28 96.4 32 ......................T..... TTTATCTGGCAACGTACCAGTCCACGTCGAAT 2720 28 96.4 32 ................A........... CAACAATGCCCGCGCCCGCCTCGAGCGGTATT 2660 28 100.0 33 ............................ CAGCCGCCGGCGCTGACCGGCCTCGGATATCCC 2599 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.5 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TCTGCAGTACGCGCGTCCGTGAAGGTTGGCCAGATCAGTAGTGGGCCCCTGCCGGGCGAGGCTAACCCCCGTCTCTCACCCTGTAAGCCATCGCCTACAGCAGATCGAGAGCTTTCCCAATTTGCTCGAGGCGGCCCCTCGGGTAGATTGAATCCCACCAAGACGTCGAAGGAACGACGCAGGCTGACCAAGGATGGCAGCTAAGGGAAAGTCGCAGGATAAGCGGCTACTTCGTCAGGATGACGAGCACACGGACGGAAGGAAACATGAACGGCGAGGCTAACCCCCTCGCCGTTTTTGTTTGTGCTGAGAAAACGCGGCTTGACCTCCTCGGGGTTAAGCAACGGCGCAACCGTTTCCCCTGCTATGACCATTTTTTCCAAGGTGAACTGTAGGCTCTTTAAAAACAATGACTTACATATTCGCCCAGTTTTATGGGGCACAGTGCTGCGAGCTGGATTTTTCCTTGCCAGACAAGGTGTTGGCTGTTTGAATCGCTA # Right flank : TGCACTTGGGAGCAGCACCACAAGCCGGTACCCTTTCCCATGATTTTTAAAGGGAATTTCAACATGATCGAACTGCAACATATCAGCCGCCTGCTTTGCTCCGCTCTCGCTGCTGCCCTTCTGGTTGGGTGTGCGAGCAAGGAGCCGCCGGGGCCTCAGGTCACGCTCCAGGACCCGGAGCAGACTCCGCGCGAGAAGTGGTCGGACGCGATGAAGATTCTGCGCGACGATCTCGGCATCAAAGGTCAGAAGGACGTACCGGTCGAAACCGCTCGCCAATATGGCCTGATTGCAGGCGTGAGCAAGCCAACCCGAGGCAATGGGGGCTCAATGGGTGACCTCGCCTTTGGTGGCGTTGGAGCAGCGCTGTTCTTGATCCCAACCGGGGAGGTAATGGGGCCTTGGCAAAAAAAACAAGCTGCCGCCTGGGTTCCCGCTGGGAAGGCCAACAGCATGGCCGAAGCAATTCAGATTGCTATGGATACTTGGAGCAGGGCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 63734-65022 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJAA01000084.1 Azotobacter chroococcum strain ATCC 9043 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63734 28 100.0 32 ............................ GCATCGGCGCGGCCATGCTGCCGCTGCTGCTG 63794 28 100.0 32 ............................ TGCCAGGGCAACGTCGAGTACCCCGAAGACGA 63854 28 100.0 32 ............................ GGGCTGGAGGTGCGCGCGGCGCTGTCTATGGC 63914 28 100.0 33 ............................ CACCAGGAACACGAAGCCGGCCGGCTGCTCGCC 63975 28 100.0 32 ............................ TTGGCCATGGCCGTAGCGGCCTTGGCGGTTTC 64035 28 100.0 32 ............................ AGAGAACCACCGATCATAACCAGCATTACCGG 64095 28 100.0 32 ............................ ATCTCGGCCAGCCTGCGCTCGAGAGCCGTGGC 64155 28 100.0 32 ............................ ACAGGCCGCCCTGGCATTGGGCGATGTGCTCT 64215 28 100.0 32 ............................ ATCCAGCGCGGCGTCGATTGCTCGAGCATCAG 64275 28 100.0 32 ............................ TGGACGAGATCACGGATAGAGCGGCTGATCTT 64335 28 100.0 32 ............................ GGCCCGTGGCGGCAAAGGCTCGCCCGGTCTAC 64395 28 100.0 32 ............................ GCCACCAGGGCGAACACCTGGGCGACGAGCAG 64455 28 100.0 32 ............................ TGTCTCTGCGCTGGGCAGGGCCTTTTGAGGGC 64515 28 100.0 32 ............................ AAGACCACTCCCCTGATGCCGCCCTGGCCTAC 64575 28 100.0 32 ............................ GCCGGTTCAGCATGCCGAGCGGGAGAAACCTC 64635 28 100.0 32 ............................ GCTGCCAGGGGCGTCCACGATTTTCAGTTGCT 64695 28 100.0 32 ............................ ATTGACGAGCGATTGAAGGTGACTGCGATGGA 64755 28 100.0 32 ............................ TCGCCGACCCAGCCAGCGCAGCAGAGCCAGGC 64815 28 96.4 32 ........T................... TGGTGAAGCTGCGCAACAACTGCATCGGCCAA 64875 28 100.0 32 ............................ TTGAGAAACCCGACCGCCATGCCGTCCAGCCC 64935 28 100.0 32 ............................ ATCCGGGAAGCCGAACCCAGAAAGCCCAGAGC 64995 28 92.9 0 ...........TG............... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.5 32 CTTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : GCTAGAGGCCCTGATGGCGCTCGACTGGCTGAGCGGGATGCGCGACCACGCCAGCATCGCCGAGCTGCGGCCCGCACCTGCGGGAACGCAGTACCGGGTGGTCCGTCGCGTCCAGTGCAAGAGCAGCCCCGAACGCCTGCGCCGGCGCCTGGCAAAACGGCACGACCTGAGCGAGGAACAGGCCCGCGAGCGGATACCGGACACGACGGAGGGCCGCCTGCTGAACCTGCCCTTCGTCTCCCTCCGCAGCCAGAGCACTGGGCAGAATTTCCGGCTGTTCGTCGAGCATGGCGAGCTGCTGGAGCAACCGCTCGCCGGAACCTTCACAACCTACGGCCTGAGCAACGACGCGACCGTTCCCTGGTTCTGACCATTTTTTCCGGGGCGAACTGCAGGCTCTTTAAAAACAAGGACTTGCACCTTCGCCCAGTTTTATGGGGGATCGCGCCGAAAACCGGATTTTTCCTTGCAAGGCAAGGGGTTGGCTGTTTGAATCGCTA # Right flank : AGTCACTTCCCGCTGGAAGCGATCCGCCCGGAGCTTCACTGCCGTGCAGACTGTTCGCCGGGCGCGGAGAACGGAGCGCCAGGAGCGGCTAGAACCTGCCCCGCCAGACGATCGCCAGGGCAGCCAGCCCGACGCACACGACCAGCCCCTGCATCGCCGGCAGCAGGCCGATGGCGTCGACCAGCGCGCCGATGCCGAGGATGCTCAGGGCGCTGCCGAGGTAGCCGGCCACATAGAACAGCGAGCTCAGGGCGCCGCGGTGCTGCGCCGGGGCGATGGCGGCCAGGCGGCCCATGGCGCCGACGAAGGCCGCGCCGTAGCCGACGCCGCTGCACAGGGTGAACAGGCAGAACCCCCAGGCCTGCCCGTACGCCAGGCTGGCGGTGCAACCGGCCCAGCTGGCCGCCAGCAGAGCGCAGCCGACGCGGATCGCCCGCCCGGCTGGCATCCGCCGGCAGAGGAACTGGGTGGCGCCGGCGGCGATCTGGAAGGCGGCGACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //