Array 1 47302-46894 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI519443.1 Leptotrichia trevisanii DSM 22070 K324DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 47301 37 100.0 38 ..................................... CAAGAACGGAAAGCGGTTGCAAAGCGTATAAAGGAGAC 47226 37 100.0 37 ..................................... TTCTATAATCTTTTTCATAGTTACCTCCTATATTTAT 47152 37 100.0 37 ..................................... TTCGTAAATAATTTCTATATCATAATACTTATAATGT 47078 37 100.0 37 ..................................... CTGTATATTCAAAATAATCATCATTAGCATTAGACTT 47004 37 100.0 36 ..................................... ATTGAAGAGTTTACTAATATAATTTCGTTAGATGAA 46931 37 91.9 0 ........................T....T......A | A [46898] ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 98.6 37 GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Left flank : ATAATTGTAAAAAAAGGCGAATTAGCAAAAATAAATAAAGGAATGTCACAAAAAGGCTTTGCTGAAAGATGTACTTATACAGTAAAAGAATTTCCAAAAAGTAATCTTTCAAAAAAGGCTGAAGAAGCCTTGAATAAGATATTTTCATCTATGAAATAAAATTATTGAAAGCAGATTTGAAGAAGGATACTGAATTACAAAATTTGTTTTTTGGTATCTTTTTATTTAGGAGAATAAATTTTGATAATAATTTTTTAAAAAAATTTTGAAAAATCAAAAAAATGTGGTACAATAAGTTCGTGGTAAAAATTCCTACCACTACTAAAAATTAAAAAAGCAGAGAAAAATCCATTCAAAGCCAATAAAAATGCACGTTAGGAGTTACGGAAAATGTCAAAAAAACAGCAAAAAATGATAAAAATTAAGCAAAAAAATGTGATTTTAATGTCTGAAAAAATTTCTGTAATACCGATTAATAAAGGATTTTCTCAAAAGTACGG # Right flank : TAACAACTTTTGTATAAGGTTGTTTTTTTGTTTGAGAATAAAATTAGGGGGTTGAAAAAAAAACGAAAATGTGCTATTATACATATAGAAAATAATTTTAGGTAGAGAGTGGGTTATCCCACTCTTTAGTTTTAGATATGAGGTGTAATTTTATGGAACAGATTTTAGATGAGTTTGAGAAGAAAATCGAACCGTATTTAAAGGAAATGAATCTGGAATTGGCAGATTTGGAATATGTGAGGGATGGGGGATATAATTATTTGAGGGTGTATGTGGAGAAAATGGATGGAACTACGACACTTGATGATTGTATTGATTTTAGCCGTGAGATTGATGGGATTGCGGATGAGATGATTCAGGAGAAGTTTTTTCTGGAGGTTTCGACACCAGGGATTGAGCGTAGATTGAGAAAGCCTAAGGATTTTGTGAGATTTTTGGGAGAGAGGATTAATGTTCAAACTAAAAGTAATATTGAAGGGGCGAAGAGATTTTTAGGAAAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 73147-72513 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI519444.1 Leptotrichia trevisanii DSM 22070 K324DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 73146 37 100.0 38 ..................................... TGCTAAATTAAATAGACCATTAGCGTATTTTTTAACAG 73071 37 100.0 39 ..................................... CGGTGGCAAGGTTAATAAGATGAAGCCGAAGGGAAACCG 72995 37 100.0 38 ..................................... GACATCGCAAATCTTGTGATATTCTTAGTAACTCTGTA 72920 37 100.0 39 ..................................... TTGTAATATACCCTTAAGGATGCTTTGAATTCAACAAAG 72844 37 100.0 37 ..................................... AAATGTATGGTTTATCTCTAACACTTTTTCTTCGACA 72770 37 97.3 36 ........................C............ AACCTAAAAAAGATAATGGCTTCCAACACAACCGAA 72697 37 97.3 36 ........................C............ GTATGAAAATTGATCTTTTTATGCCATTTTCTTGTA 72624 37 97.3 38 ........................C............ AACCCATATCCTAACATATTACCTATACCAGTAATAAC 72549 36 89.2 0 ..............................A-.C..T | C [72520] ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 97.9 38 GTAAAAGTAGTATATCCATTAAAATAAGGATTGAAAC # Left flank : TCTAGGATTTGAAGAAGAATTTGAAGTGAAGAATGTAAATCCAATTGTGTTAAATGGTTTAAATGTGGAAACAACACAGCACGATTTCTTCTCGAAAAAATCTACGAATTATGAAAAGGCGTTGGAAGTGGTGCATTTGCATGATGATGACTTTAAGTTTGATGAAGAAGTGAATGCAGATGATTTGATTTAAGTTTGGAAACGTACGAAAATGAGAGCTTTAATTACTGGTTCTCATTTTTTTGAAAAAATATCCAAAAAGATTTTGAAAAAAGAGAAAAATGTGGTAAAATAAGTTTGTAGAAAAAATTCCTGCCATTATAAGAAATGAAAAAAAGGAAAGAAAATCCACTCAAAGCCAATAAAAATGCACGTTAGGAGTTACGGAAAATACTAAAAAGACGTCAAAAAATGATAAAAATCAGTCAAATAATTTCAATTTTAATGTCTGAAAAAATTGCTGTAACACTTATAAATAAAGGATTTTCGCAAAAGTACGG # Right flank : AATAGTCGTTGTGTAAAAAGCAATGATTATTTTTTTATAAAAAATAAAAAGTTGATAGAAAAATAGTAGAAAATAGAATAGAATTAAGCAAAATTTTTAAAAGTTTTAAAGATATTAGAAATAACATATCACATACATTGGAAGATAAGGCGGAAATTCAGGAAATTATTTCAAAAATTCCAGAAAATTTACAAAAATTGAGAGAAATATTTAAGAGGGAATATACAAATAAAATTCTGAAATCTAAAAACCTGCAATTACAGTCAACATATACTTATTTAGAAAAATTGACTGAAGAAGAGCGATTTGTGGAAATTGGAAGAATAGGATCCAATGGCATATATGATTTTTTATTTAAAGTACTTAATGCACAAAAATCAGGAGAAAATAAAAATATTTTAATCACAGTTATTTGGCTGTGATTTTTTTTTGAAAAAAATAGGTTAATAATGAAAAAAATTAAGTTTGAGGAAAAGAGTATAATGGTTTTGTAAATGAGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAAGTAGTATATCCATTAAAATAAGGATTGAAAC # Alternate repeat : GTAAAAGTAGTATATCCATTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //