Array 1 54-2596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRA010000016.1 Bifidobacterium sp. W8114 NODE_18_length_2649_cov_118.867005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 54 32 100.0 33 ................................ CACGTCCTCTCTCGTGCCCTCGCCCGTCCAGAA 119 32 100.0 34 ................................ CTGCCCGCCCTCTCCGTGCTTGTCACCCAAGTCG 185 32 100.0 34 ................................ TGGACGCCCCTGGGCGTGGATGTGCCGTTGGACG 251 32 100.0 33 ................................ TGCTCGGACGCCTGCCGTCAGCGGGCCCACCGG 316 32 100.0 34 ................................ ACCCTCCGGCTTATGAAGTATGAGATCGAATCAC 382 32 100.0 34 ................................ ATGCCGCTATCGACGTGAACGCTTTGGCAGTCCT 448 32 100.0 34 ................................ TGCGCAAGATTCGCCAGTGGGTGAATACGCTCCC 514 32 100.0 34 ................................ CATGGATGCGGCACGGCAGCTGGCCCTGGCGCAG 580 32 100.0 34 ................................ TTTAGCGGTGTACAACATACTCCTATCTAAGGTT 646 32 100.0 35 ................................ CATAATCTGACCTGGGATGTGTACTTCATCCTGGC 713 32 96.9 35 ..............C................. CTGTGCGGCATGAGCATGGTGCCAGCACGTCCAAG 780 32 100.0 35 ................................ GAGGGCATTGGCCACCTTGGCCGCCGTCCCCGCTT 847 32 100.0 35 ................................ CGGGGCGCCAAAAACACCAACTCGATAGCCTACTC 914 32 100.0 33 ................................ TGCGTGTTGGTTTCCGCGTGGGATTGCGTGCGA 979 32 100.0 35 ................................ AGATGATCTTCAAGTCTTTCGGAAGTCTGTAAAAC 1046 32 100.0 34 ................................ CGTTAGTCGTCTACGACTATCAGCAGATTACTGC 1112 32 100.0 34 ................................ CGGTACAGCGTGCCGCCCTCCCGGGCGGGCAGGC 1178 32 100.0 34 ................................ ACCCACCGCAGGGTCCTGTCGTTGTCCACGCCCC 1244 32 100.0 33 ................................ AAGCGCGTCCTGCACAGGACGGGCACGGAGCGG 1309 32 100.0 34 ................................ CTGGACTGGGAGCCGCCGGCCAGATACCGGGGTG 1375 32 100.0 34 ................................ GCGGGCCTCCTGTCGACGGGGACGACCGAGGCGG 1441 32 100.0 34 ................................ AACCAGGTCCTGGACACGAGCCGCATCACACTCG 1507 32 100.0 34 ................................ GGACGCTCTTGCAATCGACGGCCGGCTCCATACC 1573 32 100.0 34 ................................ GCCCGACCCGACCGCCAAGCTGCACATGATGGCG 1639 32 100.0 35 ................................ ATAGATTTTATGGACATGGTGAGAAAGTACGATTA 1706 32 100.0 33 ................................ CACTCGGTCCAGCTGCTGCGCAAGACCCCGCTC 1771 32 100.0 35 ................................ ACCTTGCGCCGCAAAGCGCAGGACACCAGGCGCAA 1838 32 100.0 35 ................................ CACCTGGTCGTCTGCCTGCCGGGTCCTGCTGCGGG 1905 32 100.0 33 ................................ AATATAATTACGGCGACCTACAGCAGACCACGC 1970 32 100.0 34 ................................ TCGTGTTTGCGGTAATTCCGTCCAGAAATCGTCG 2036 32 100.0 33 ................................ GTACCGTCACTGGTCCCGGGCTGCAGATCGATC 2101 32 100.0 34 ................................ CAGAAGCAGATGAACCTCCTGGTGACAGCAGGCG 2167 32 100.0 35 ................................ CTCTCTCAGTTCCTGGCCCCACCGGTCCAGCATGT 2234 32 100.0 34 ................................ TGGTACGTTTTGGCCTGAGCGAGGGCATTGGCAT 2300 32 100.0 35 ................................ AATCGATTGCAGAACGATCTGACGCATGACAACAA 2367 32 100.0 34 ................................ GGGACGGCGGTGCAGCAGATCAAACTGTCCACGC 2433 32 100.0 34 ................................ CATGTGGAGGGCGGCGTGGATGCGGATCTGGTGG 2499 32 100.0 34 ................................ GTAGACAACCCCGATAAAGCAACCCCGCGAGAGG 2565 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 39 32 99.9 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : CGGGAGCGTGGATTGAAATCCTGACCTGACCACGGTCCTTTACGGGATAGCGGG # Right flank : CCTGACCTGACCACGGTCCTTTACGGGATAGCGGGTCGCTCCCTTCACGGGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 180460-174139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRA010000002.1 Bifidobacterium sp. W8114 NODE_2_length_469792_cov_325.138997, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 180459 32 100.0 34 ................................ ACATGCTGGCGCCACCTATATGACTATCGATCTG 180393 32 100.0 35 ................................ CTCGCCAAACTCCTCCCGGTGTCTTACCGCGTAAG 180326 32 100.0 35 ................................ CTCGCGGGTCGGTGACCATCACCCCGCCGAGCAAG 180259 32 100.0 34 ................................ CCCAAGGCCGGGTCCGCCCCCACGCTCTTATCCG 180193 32 100.0 34 ................................ CATCCGGCCATCACGTCCTTTGCGCGACCGTCGC 180127 32 100.0 36 ................................ TTGAAAATGATGGCGACATATACCATATCCTGAGAT 180059 32 100.0 33 ................................ ATGGACTATGTGCCGCATATCATCGGATACGTC 179994 32 100.0 35 ................................ CAGAGCGTCAAGTTTTTGTTGAAATTCAATCAGAA 179927 32 100.0 34 ................................ TATCTTGTCGCCTGTAGGGCCTACCGCATATGGC 179861 32 100.0 33 ................................ GCTTTTGGCCATATGCGGTTTTGATATATTTTG 179796 32 100.0 35 ................................ CAAACGGTCACACCCTTTTCAAAAATCCCTTTGAT 179729 32 100.0 34 ................................ ACGTCGAGGCTGGAGGGCTGTGTGGTGATGATGA 179663 32 100.0 34 ................................ CCCATGAGGCCTCTAGATGTGCGGCATGGCTAGC 179597 32 100.0 33 ................................ CCGGGCATGATAGCCACAAGGCGTATCTCGCAC 179532 32 100.0 33 ................................ CTACTAGTGTGCGCCATTGCAGGCACCGTTTGG 179467 32 100.0 35 ................................ CCCGAGGATAGGTATCTCAATGCGATGGCTGACAT 179400 32 100.0 34 ................................ CTCTAGGGTTTATCTCTATATCCTGACCTATTTT 179334 32 100.0 34 ................................ ATCTGTGTAGTAGCCGACCTTATAGTTTGGCCGG 179268 32 100.0 34 ................................ CTTATCATCCTTGATGGCGCGGTCGCAGGCTTCA 179202 32 100.0 33 ................................ ATGCGGTTTTCAACCAGTGAAACGCATTGTCTC 179137 32 100.0 35 ................................ TCGGTGAGCACGGTTTCTGTGGTCATTTTCTTAGC 179070 32 100.0 36 ................................ CTCTTGCTGGTGATATGGAAATGGCCCTCGATTATG 179002 32 100.0 34 ................................ TTGGGGTCGCCATCCATGATGATTGGATACGACC 178936 32 100.0 33 ................................ GTGAAGGTTTTGCGAAAGTCAGATACCCAGGGT 178871 32 100.0 35 ................................ TTTGCTGTTGGTGTGGCGTGAGTCTTTGAGTGTCT 178804 32 100.0 34 ................................ CAAATAGAACCTACAAACCCGCTTACAGCAGACC 178738 32 100.0 35 ................................ GCTGGTCGCATTCAGCCCGTACTCTGCTATAGCTA 178671 32 100.0 34 ................................ ATCTACAAGGGTGGCCGTGGTGGTGGTAAGTCTC 178605 32 100.0 34 ................................ AATGACGCGCTGCTCGCTGGCGGTAAGAGCACCA 178539 32 100.0 35 ................................ TGCTCCAGACCGGTGGGTGACGCTGATTAAGGCGG 178472 32 100.0 35 ................................ AGGAAGGCGACCATGAATCCTAGAGCTAAGCTCAG 178405 32 100.0 34 ................................ TTGTCGTATCGGCGTGTGCAAAGGCCAACAGCAT 178339 32 100.0 34 ................................ CGGTAGTGCCAGGTCGGCGGCCGGTTTGAGCGTG 178273 32 100.0 35 ................................ ACAATACAATCACAAATAGCACTATTACCACTCCG 178206 32 100.0 34 ................................ GTAGGCTCTGATGATAGCGTCTACGTCGATAAGG 178140 32 100.0 34 ................................ TTGCTCCTCGCTGTAGGGTCCCCAAGCCTTGCCG 178074 32 100.0 35 ................................ ATCCATCTTGGCGGTCAGCTTATCCCAGTCGGCCA 178007 32 100.0 33 ................................ GGCGAGGCGAACGCCTTCACGGAGGCTCTGCGT 177942 32 100.0 35 ................................ ATATAGTCCTTGGTGGCCAGGTCCATATCCGTCCA 177875 32 100.0 35 ................................ AGTCACAAAATCATCACATATAGGCGCCGCCACAC 177808 32 100.0 33 ................................ GTCAAATCGGCGCGGCAGTGTTCCCTGCCCCAT 177743 32 100.0 34 ................................ TCATCGGAGGTCTTCGGCGGAGGAGGACAGCAAG 177677 32 100.0 34 ................................ CCGTGTTGCTGATCCGCGTGAATTGCGACTTCAC 177611 32 100.0 34 ................................ AAAGATTGTTTGGGGGTCGAAACCTCAATAATAC 177545 32 100.0 34 ................................ TCTGCCAGACGTAGCCGCCCGGGGTGATGATGTC 177479 32 100.0 35 ................................ GCCTTGGCCCGGATCTCGTTGCGCAAGGCCTGACC 177412 32 100.0 35 ................................ TAGCCGAAAATCACAATAATAGCACTTGTGCATTA 177345 32 100.0 34 ................................ GGCCTGGGAGGGCGCAAGGAGGACACGGTGCTGG 177279 32 100.0 34 ................................ ATCGCGTCTGTTGCGGCTGCTGTGGATGAGGCTA 177213 32 100.0 33 ................................ CCGAAAATAATGTCGTCGCTTGGCTACTCTGCT 177148 32 100.0 33 ................................ TCCCAGACAATCCACTGAGGACGGAGCTCGCGT 177083 32 100.0 35 ................................ ATCGTGTATCCGGGGACAGCCGTTTTCGCATCCTT 177016 32 100.0 34 ................................ ATCGATCCCTTTCGGCAGGTTTATCCATTTGAAT 176950 32 100.0 34 ................................ ACCGTCTACATTAGCATCATCGGAACAGCGACAC 176884 32 100.0 35 ................................ TTCGCGTCTCGGGGTGTGTAAAATAGGGACTGATC 176817 32 100.0 34 ................................ CACATGAAGCCATGCCACTGGGCGCGGGCACAAG 176751 32 100.0 33 ................................ TTGGTCATGCTCTGGCGAGAAAGACGTTCGATG 176686 32 100.0 35 ................................ CGCCATTTATCAGGAGCAATCAGAAATCAGCGAAG 176619 32 100.0 34 ................................ GATGATGATACCGCCCCACTGTGGGATATGGTCT 176553 32 100.0 34 ................................ AATACTTCTCCAGCCGGATACCCATATCATTACT 176487 32 100.0 35 ................................ TGCAACCCGCTCGACCAAGACGGCTACCCAGGCTA 176420 32 100.0 35 ................................ GATTTTGAGGATGATGGGACACCGGGCAAAAAATA 176353 32 100.0 34 ................................ TCTGCCCGTCCGGATACAGGAGGAGCAATCACTA 176287 32 100.0 34 ................................ CAGACGACCCTCGAACACCGTGCCGCTATCCACT 176221 32 100.0 33 ................................ ACCGACCTGCATCTCCCGGTATCATCATCCCAT 176156 32 100.0 34 ................................ ACGTCGATTGCCGCATGCACCTCGGGTGTCATGA 176090 32 100.0 34 ................................ CCTGACCTGACCACGGTCCTTTACGGGATAGCGG 176024 32 100.0 35 ................................ ATGATGATAGGCTCAAAAAAGGACATTATAGGACT 175957 32 100.0 33 ................................ TTCAAAATACCCTTGGGTGACGGAGGGTATCAT 175892 32 100.0 34 ................................ AGGTTGGCAAGGATCGGCAACTGCATGTGATCGC 175826 32 100.0 34 ................................ GCTGGTGAGCTGGTCATAAATGGCCTGCTTGCTC 175760 32 100.0 35 ................................ AGCGTGGCCGGATACGAGGAAGGCGTGGAACAGGA 175693 32 96.9 35 ...............................C TTGACGACAGGCCGCGCCGGTACACGACCTCTCAG 175626 32 100.0 36 ................................ GAGGGGTGCACCCGCTACCAGCAGTCCGGCGTCACA 175558 32 100.0 34 ................................ TCATGACCCCCGAGGTACACGCGGCCATCGACGT 175492 32 100.0 33 ................................ GCTGACGACGCTGAAACGGTATATGCACGCCAA 175427 32 100.0 35 ................................ TCGCAACAATCCACAATATATGCTCCATACGTATT 175360 32 100.0 35 ................................ ACCTGGGACATGGATCAGATCAACAGCAAGGAGGA 175293 32 100.0 34 ................................ ATCGAAAATCGGATAATGCTTGGGGTCGAGATGA 175227 32 100.0 34 ................................ GTTCATTTTCCAGTAGGTGAATTTTTGCATGCAC 175161 32 96.9 35 ............G................... CCCAGCTTGTTCTGGACGTTTACATCCCTGTCAAG 175094 32 93.8 34 ..........G.........A........... AAATTGAAGATAAGAAATAAATTTGCTAGTATTG 175028 32 100.0 34 ................................ CCACTACCATTTATATCACTGAAAAATGCTGTAA 174962 32 100.0 33 ................................ AAAAACGTGCTCATGTTCAGCGCCAATCCGACC 174897 32 100.0 35 ................................ AGCTTACTGGCAAGTGGCCGGAATGCCAAAGGAAT 174830 32 100.0 34 ................................ GATTTCTATGCGGGCTGAGCAGGCGTGGAAAGCG 174764 32 96.9 35 ...................T............ CTTATTCAATGGCTACCATTACTGATAATAATGGA 174697 32 100.0 33 ................................ GCTCTGACCTATGTACAACAGCCCGGCGAGACT 174632 32 100.0 33 ................................ ACTTCTGACAAGGCCATCTGGAGGCAACTGCAG 174567 32 100.0 34 ................................ TGCACGAAGGTCTCCAGCACGCCTTTGGCGAGCA 174501 32 100.0 33 ................................ ATTGGTCATGAGCGTATTGACCAGATTGGCTGT 174436 32 93.8 35 .................G.A............ ACAGGTGCGTTTGGCGGCGCCGAAGAGACGATGAG 174369 32 100.0 33 ................................ GTGTGCATGTGCCAGCCATGTCGGGCGAGGACG 174304 32 100.0 34 ................................ TGGATCAAGACGGCCAGGGGCTTGTGAATAATCG 174238 32 93.8 35 ............G...........G....... TACGACACCGTGGCGCTTTCCACCCTTCGGCAGTG 174171 32 81.2 0 ...A..........A.A...A..A.......A | G [174142] ========== ====== ====== ====== ================================ ==================================== ================== 96 32 99.5 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : CATTACTATGGGGTGAGGCGCCATATCCCTGTTGATCAAGTGATGATGCTATAGAATCATTGGGCCTTGGTTGTACTGCATTATAATTTGAGCCGCTGAAGTTAGATGATGGCTCAGTGGTTGGTGTAATACTGTAAACAGTGCAGTATGTTGATTGTTGCTGTGGATTATCGTTGCCGCGAAACGCTAGCAATCATGTATTCGTCTGATTCTTCGCGCTGCGGATCGTTGCTTCTGTACGATATTCAGTCTTGATTTCGCATGTTTTAGTGAGCTGATTTTGTTGAATTTCCATGCAGAGGTCTGTAGATGCGGAGAAAGCTAAAATTTTAGTGAAACAGATGAACGGTTGTTTGATAACTGAATAGTGATGTTGTCGACTTGAGACATCATCTCAATTGCTCGACTACAGACAGAAGCTGAGTACCTAGGTTGGGCTGTTGGGAGTCGTCAGCTATTAAAGCTAATCATATATTGGTCATTGGATGTATCATTGAGCA # Right flank : CCGATTGTGCTACTTTGAATTACCCAGACAGCATTGTTTTCTAGCGGGGACATGCAGTAAATCTGTTCTTTCCTCAGAACTCTGTTATGAATTGTATTCCTTCTAAACATGAGTATGAGTTGCTGCACGGGCATAGTGTCAATCTTTTTTATGTCATTCTCTTGCTCATAGCCGCGAGAATGATCCCAAGCAGTGGACCCGGACCTGAACCTTTCAGTAGTATAGAAATACTAATGGTGCTCTCAGCATCCGCGGGAATGATTCTGCAGGACATCGGATGGATGCCCTGCAGGTTCACAAAGATGAGAGAAGATGAATGGCTATGGATGAGGATTTCATGAGAAAAATGGCATCCAAGGATAAGGCCTGTACCACTTATGACCATATTCCCCAGAAGAGGATCGATGACTATGTGTCAGAGCATCCTATCACTGACGACATGGATGATGTAGAGCGCCGGGTCTGGGATTCGCTGGATGATGAGGACAGGCGAATGATCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //