Array 1 126524-121095 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPVX01000003.1 Acinetobacter baylyi strain XH446 XH446_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================= ================== 126523 28 100.0 32 ............................ GACACCAAAGGTAATAAAGCTATGAAAGAATA 126463 28 100.0 32 ............................ TTTACTCTTATTATACTATTACCCCTAACCCC 126403 28 100.0 32 ............................ TCCAGCTAAAATCGTTTGAGGGTGAAACTCCT 126343 28 100.0 32 ............................ ATGATTTCGAAAGGCTCTCCGAGTACGTTATT 126283 28 100.0 32 ............................ ATTCCCAGCATTCACGCTGAGTGCTTCGGCAC 126223 28 100.0 32 ............................ TGTGCAGCCGTTTGGCGCGCCCCAGATATGCG 126163 28 100.0 32 ............................ AGGAACCGTGGCAGATTGCGTTAATATGTTAG 126103 28 100.0 32 ............................ TAACGATGGAATAACGTTCAAAGAATCTAACG 126043 28 100.0 32 ............................ AATTCATGAAAGATCATTCGCTGTGTTTGGGG 125983 28 100.0 32 ............................ ATTTGCCGCTTTGAATATTTGATGCACCTGCT 125923 28 100.0 32 ............................ AAATCGATGAGGGACAACATCAGGCACTCGAC 125863 28 100.0 32 ............................ ACAGGGCAGGGAAATAACCAAAAATCGATATA 125803 28 100.0 32 ............................ GACATAGGAACGATATGAAGATGATTTTTTTT 125743 28 100.0 32 ............................ ATCAAGCTATCGTCATTTGGCCGATACACAGC 125683 28 100.0 32 ............................ TCTGCCATGCATACAATTTGATTTGGCTGCGT 125623 28 100.0 32 ............................ AATCATCAATATCTTTTTGCGCTTTGCGTGAA 125563 28 100.0 32 ............................ TCTCACGTACAAAAAAAAATCCTATTTGATGT 125503 28 100.0 32 ............................ GCGATTGAATACCGATAGATCGGGGATATTAA 125443 28 100.0 33 ............................ ATACACTACATTGAACTGCTCGGACTTAAGCAT 125382 28 100.0 32 ............................ AAAAAAAGTGTAGCCAACTTCATACAGTTACC 125322 28 100.0 32 ............................ CAGGTGGCAGCGTTCCATTTTCGGGGGCAAAT 125262 28 100.0 32 ............................ AAAACCACATTATAAGGCTCGGTAAATGTGTA 125202 28 100.0 32 ............................ ATGAAAATAAGCCCCAATATTGTCAGTGTTCC 125142 28 100.0 32 ............................ GTTTCCGCGTCATTCGGGTACAGTTGCGACAT 125082 28 100.0 32 ............................ TTGAAACCTATGAACTTTGTGTTATACGTGTC 125022 28 100.0 32 ............................ CTTATCAAAATCGGTGGGATCTTTGTCGTACT 124962 28 100.0 32 ............................ GAATTATGCTTTAAAAAATCCTTTCGCGGGTA 124902 28 100.0 32 ............................ AATCCGATTTCTGCTGTTGCTGGGGTTAGAGC 124842 28 100.0 32 ............................ ATGTACTATAAGTCACATGGTAAAGACACGAA 124782 28 100.0 32 ............................ GAAACGTTGAATCCAGAACCAGCAATCCCAGC 124722 28 100.0 32 ............................ AAACTGTGGAGCATTACATCTACCATACTGCC 124662 28 100.0 32 ............................ TAAAACAGTCAATGTTAATTGGGGTGAACAAT 124602 28 100.0 32 ............................ GCGGTAGCTGGCGCGGTGTTTGCGTTTTTTGG 124542 28 100.0 32 ............................ TATAACTAGCATGTCAGAAATAAAACTATCCG 124482 28 100.0 32 ............................ CGTTGGTACTGTTGCAGGTGGTGCATTGGGGA 124422 28 100.0 32 ............................ GACTCCGCTACTTAAGAAAGAGAGCATAGGTG 124362 28 100.0 32 ............................ TAGAAGTAACTTACGATAACATCTTTGGCGCC 124302 28 100.0 32 ............................ TCAAGCATGTGATCACTAATGATTCGGTTTTT 124242 28 100.0 32 ............................ TATACTCCTTATATGTAATTTACGCGTAAACC 124182 28 100.0 32 ............................ CACTACATTTATACCCGCCGTTTACGCTCTTA 124122 28 100.0 32 ............................ GTTTAATGTGGCGTTCAGGTCTTGTTCGCCAA 124062 28 100.0 32 ............................ ACTCAGTTGACCAATCTTACTGCTTCACTTAA 124002 28 100.0 32 ............................ AGAAGATTTGGTGGGCAAAAATATGGAATATA 123942 28 100.0 32 ............................ ATTCTTAGCTGCATCACGCAAGATTTGCTTTT 123882 28 100.0 32 ............................ CTCATCGAAACATACATTGAGAAAAATCATTT 123822 28 100.0 32 ............................ AATCATCATCGACCGCAGTATTGAAGCGAAGC 123762 28 100.0 32 ............................ AGCCCTTCGTATATTTGAATAGTGCATTGGCT 123702 28 100.0 31 ............................ AAAAATACCCGCGCCCAAGTGATCCTGAAGA 123643 28 100.0 32 ............................ AACCATATAGAATTGTTAACTTTTGTAAATAA 123583 28 100.0 32 ............................ GATCAAAACAACAAGCGTACCAATGATGCCGA 123523 28 100.0 93 ............................ ACAAGGGATGTATTGACCAGGTGTGAGCGCAAGTTCGTCATCGCATAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 123402 28 96.4 32 N........................... ATGGTTCGGGGTTGTAGCTGTACGCCCCAGAT 123342 28 100.0 32 ............................ AAGAGCAAAAGGTAACTTGGATCTACCGCCAC 123282 28 100.0 32 ............................ CACGGAAATTGGAATGATGATTTCGACGGTAA 123222 28 100.0 32 ............................ TTGTTGAGCAGCAGAACGGCCTTTTACCAACC 123162 28 100.0 32 ............................ AGATACCTCAGTCCAAGCTGCTGAATTTTATC 123102 28 100.0 32 ............................ AAGAGACAACAGGGCTTATTAAAGTAACTTGT 123042 28 100.0 32 ............................ AAGTTTTATTTAAGCCCAAAGCTAAAGATAGT 122982 28 100.0 32 ............................ GTTAGCTGCACAAGCTCTGGGACTTTAATAAA 122922 28 100.0 32 ............................ AATCGCTAACCAGTAGAACCCGCGTAGCAGCG 122862 28 100.0 32 ............................ AAGCGTTGCGAGCGCTCAAAAAGTGGCTGATC 122802 28 100.0 32 ............................ GTCTACCAAAGCGAAAGTATCATTTTCAATGA 122742 28 100.0 32 ............................ TGTATCGGAGCTACGTCAGAAGGTCAAGCACA 122682 28 100.0 32 ............................ AGGTCGATTTATCATAAACATCGGGCACGATA 122622 28 100.0 32 ............................ GCCAGAAATTTTGACACTTGCGTTTAGCAATA 122562 28 100.0 32 ............................ AGATTGTCTCTAAATTTAACGCGTGGCTTTGT 122502 28 100.0 32 ............................ AAAGCCGAGCCCAACTTTTGACGCACAAAAAG 122442 28 100.0 32 ............................ GTCAGTGATTGCTTTCATTGCCGTAGCTACGT 122382 28 100.0 32 ............................ ATCCGCGCCCAATTTGTCCCACCAATCTTTTT 122322 28 100.0 32 ............................ GATTCCATAGAACGTACCATTGACGCGCAACA 122262 28 100.0 32 ............................ TGGATCTCTGCAGAAATCACATTGTCCAAATA 122202 28 100.0 32 ............................ AACAGGCGTTACTGAGCTATGTGTCGTTAAAA 122142 28 100.0 32 ............................ AAGCATGCCTTGATGCATACAACAAAATTGCC 122082 28 100.0 32 ............................ TGCGAGTTCAAACTTCTTTAAAGATGCAACAT 122022 28 100.0 32 ............................ CGTGGAATCATAATCATAAGCTTCACCGACAC 121962 28 100.0 32 ............................ GATCAGTGGCGCGTCTACAGTGAGCGAGTGGG 121902 28 100.0 32 ............................ ATAATTGCAACAACAGCATAATATACATACCA 121842 28 100.0 32 ............................ CTTACTTTCGCTTGCGCTTCGTTACGAATGCC 121782 28 100.0 32 ............................ TCAACCAGGATCGGATAACCATCAATTCTAAA 121722 28 100.0 32 ............................ AACAGGCGTTACTGAGCTATGTGTCGTTAAAA 121662 28 100.0 32 ............................ AAGCATGCCTTGATGCATACAACAAAATTGCC 121602 28 100.0 32 ............................ CAAATGTAATCAGGATTAGTCGATTGCAGCGT 121542 28 100.0 32 ............................ AGATCGCCTGTGCGTAGGTCAACTGCACCATT 121482 28 100.0 32 ............................ AGCTGAACACGCCGTTTTTTAACTTCCGCCAT 121422 28 100.0 32 ............................ ATGCACCTGATCCTGCCCAATGAGGGATTTAC 121362 28 96.4 32 A........................... TGATGGTGCAGGAACCACAGCAACATCAGTCA 121302 28 100.0 32 ............................ GATTGAAATACTATTAAGGCTGTTCGTAAAGC 121242 28 100.0 32 ............................ ACACACGCTGCCAATTCTTCGTTAGAGTGTAT 121182 28 100.0 32 ............................ AGCAGTAAAAGCCATGACCGTTAAGATCGCTC 121122 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================= ================== 90 28 99.9 33 GTTCGTCATCGCATAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAGCACTGTATAAAGAATTGGCCAAAGGATTTAATATTGACTTTAAACGAGATGAAGGCAAAAACTCACATGATAGTCTTACCGATATTGCGAATAACTACTTAGATCATGGAAATTACATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGTATGGGAATTAGTTTTGCCCTACCTATCTTGCATGGTAAAACACGCCGCGGAGGTTTAGTGTTTGATCTTGCCGACTTAGTGAAAGATGCTTTTGTGATGCCAACTGCTTTTATATGCGCATCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAACTTATAGAAATATGCCAAGACCAAGATCTTCTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCAAACAATTAACTCAAGTGATTCATAACGAAGTATTTTTACTCATTAAAAGCTTATATAATTGATATCAAGGGTTTTGTTTTGACTTAACTCTA # Right flank : TATTAAAAGCAACATCGATAAGATCTAGCTGTCCAAACTATCAAAAGTTGATTCAAAACTAACTTTACTTCAAATTTTTTTACAGACTCTGATCTTGTACTAAACTATTCATATATGCCACCGCAGCAGTACGGTTTTCGACACAAAGCTTTTCAAAAATATGTTCTAAATGTTTATTCACCGTTCTTGGGCTTAATTCCAAAATCTCGGCAATGTCTTTATTGGTTTTACCCAGTGCAAGCCAATGCGATACTTCGGCTTCACGTTGAGTCAATTGCGGGCAGTATTTTAAAATATCTTCTATACTCAATGCTGTACTGGAAATTTTGATTTGCACCAGATAATTTTTGGTCGTGCTTAAATCATCTTGCCAAGGGGTCAAAAGAATTAACTGAAGTTGCTGTGTCGAGGTAGAGTAAGTACAGCTCATACGTTTTTTATTGTCTTTGTCTTTTTTAATGTCTGCAAACCATTGCTTTAAGCCCAACTTAAAGCCCGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 202540-201555 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPVX01000003.1 Acinetobacter baylyi strain XH446 XH446_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 202539 28 100.0 32 ............................ TCACACTGCACTTGCGATTGGGGCACTATCAA 202479 28 100.0 32 ............................ AATGTCGTGAACACTCAGACAGGCGGATACCA 202419 28 100.0 33 ............................ CGACAGAGCAAGACATCACTGATATGTCGAATT 202358 28 100.0 32 ............................ GCAGTCGGACAACTTCAATCGAACGCATCATC 202298 28 100.0 32 ............................ CTGCTTCTCGGTCATCCTTAAATCTGAATGAG 202238 28 100.0 32 ............................ TTCCACCAATCAAGAGTGGATTGGTCAATAGT 202178 28 100.0 32 ............................ AGTCGACCGCGAGACGGGAAAAAGTACGAACA 202118 28 100.0 32 ............................ CGTAGACTGCCACCACCGCACCCCCATACATT 202058 28 100.0 32 ............................ TCGCGCAATCCATCGCGAGGGGCCTATTCGAG 201998 28 100.0 32 ............................ AATGAGAAAATCAAACCACCCATGATGATCGT 201938 28 100.0 28 ............................ TACTCGAACTTGTCTGTCATATTGCCCT 201882 28 89.3 32 TAC......................... TGAATACTCAAATGACAATAAACAGGATAAAG 201822 28 100.0 32 ............................ TGTGAACAAATCCGTTGTAAGCCGCGCCTTAT 201762 28 100.0 32 ............................ ATTTAAAAGCCACTCATCTGACACACCTAAAA 201702 28 100.0 33 ............................ TTATCGAAGTATTCTGCTTTGGGTGCGGCAATG 201641 28 100.0 32 ............................ ACCAGAAATGATTCCAGATATTCCAGATGAAT 201581 27 82.1 0 .C......T..............-..TC | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.3 32 CTTCACTACCGCACAGGTAGCTTAGAAA # Left flank : CCTAAATCATTAGGTGTAAATGCGATCTGCCGCTGAAGATTACTGATTTCAATCGTATCTGAGTCAATGAGGGTAATTTTGCCGACCCCAGCACGTGCAAGCAACTCAGCCGACGTACAGCCAATTCCACCCGCTCCAACAATCAAGACATTGGCAAATTTTAATTTTTCCTGAGCATCAACATCCCATCCATCTAGTAAAATTTGACGGCTATATAAATGCATTTCTGCATCGTTAAGCTCTAAATCCAGATTGTCCTGATCGTTCACTCGCGATTATCCCAATTTATGAATACTAAATTTATAACTATAATTATAAAGAGAAGCTTGTGTCGTGAGATGTTTTATTTTGACAAAAGTAAGCTTTTACCCCAATATTTTATTTACTCTTTAACAGCCAAATAAAATCAAAGACTTAGTTAAAGTCAAAATAAAATGGGTATTTCCATTTTATTTGCTTTAATGGATTGTTTATATTAATTATTTTTGCACTTTCTTACT # Right flank : AAGTAAATTTTGATCAAACATTTAAAGCATATTAAAATAGTCACTTAAATTATCAATCAAACATTACTTTACTGATTCATATCAGTTTTTCTAACGATAGATAACAAAATTTTGAGTAAAAGAAATGACTGCATGGCAACAACTTGGGATAGAACCCACTACAAATTTAAGAGAAATTAAAAAAGCATATGCTGTAAAGCTCAAGCAAATTGATCAAGATACTCAACCAGATCAGTTTATTGCATTGAGAGAAGCCCTTCAAACTGCCCAATATGAAGCAGAATATGGACTGTTTGATCAAGAAGAGAATCAAGATTCTCTATTTAATGATGATCAGCCACTAAATTTTAATGAGCACACTGAATCCGCTCAAGAAAATGAAATCAATCAATCATCAGACACTTTACTTGAAGAAATTTATCTTGCCATTCAGCAACGTATCGTCGAGCAAGATATTCACTTCAATATTCGAGAAGCATTGCAAAAATTTGCTGATCATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTACCGCACAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTACCGCACAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 234613-235000 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPVX01000003.1 Acinetobacter baylyi strain XH446 XH446_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 234613 28 100.0 32 ............................ AACGCGCATAACCGTCAATCGCTTGCTCAATA 234673 28 100.0 32 ............................ TCACTAGTACAGATGTCGGTTCCGCATTAAGT 234733 28 96.4 32 .......A.................... TAATCCAGCAGATGGTACTGCACGTATCATGA 234793 28 100.0 32 ............................ GTGATTGTTAATTTCTGGGTCAGAATAGCGAT 234853 28 100.0 32 ............................ ATTCACCGTGACACGTGTACCCGCCGTTTCTG 234913 28 100.0 32 ............................ TCTTGCTTCTTGAAGCTTATAAATCGCATCCA 234973 28 89.3 0 ........................ACT. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 CTTAACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATAACTAAAAAATGATTTGAGAATGGTTTCACCGCTTAATTTTCCACTGGCAATTGGGGTAAGTACGCCAATCGTTAAAATAATCACACCAACATTTAGGCCATGTTGCTGTAAAAAAGGGAAAAATTCACTTAAAGGTGTAAGCTTAAAAACAATTAATACGCCTGCAGCAATAGTTACCGCCGCATTTTGGCTAAAAATACCACAAGCCAGTAAAACGAGTAGAACCAGTAAATTGACATCAAATTGAGACATGAGCATGGTATGAATAGTTAGTTTTGCAGGAATGATTATTGTATAACGATTTTACCAACACTTGAAAAAGAAAGACTTTTTACAGTAAATTGAATATCTATTATACTGGCTTACCCCAAAATTTTAGACTCTTTAAAAAATCAATTTAAATCAAATGCTTATATTTTGACTTAAAAACTTTGGTTAGAAGTGAATTTGTTGATTTAAGTTTTTGATATTTCGACTATTGCTCAACAATATTTACT # Right flank : ATTCAATCAATTGACTTAAAAAAATAAGTTACACTAGGATGTCTTTTTTATTCTGGATATCGATATGCTCTTGGAAAAAATGTTGCAGTCACAAGGTTTTGGTTCAAGAAAATACTGTCAGCAACTTATTAAGAACGGAGCAGTTTCGATACAAGATGAAATTCAAAAAGATCTAAAATATCGAATTCATGATTTAACTGATTTTAATTTTCAGGTTTTTGATCAAAATTACGTATATCGGGAAAAGGTATATATTATTTTAAATAAACCTAAAGGCTTTGAATGTTCTCATCAGCCACATCATCATCAAAGCGTATTCAGTTTACTGCCAGATTTATTAATTCAGCGCAATATTGCGGCTGTAGGGCGCTTGGATCAGGATACTACAGGGCTGTTGTTACTGACTGATGATGGACAATACCTACACACGCTAACGCATCCCAAGAAGCATGTTCCAAAGGTATATCATGTGGCTACGATTGATCCAATTACAGTTGATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //