Array 1 63309-62547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUTM010000003.1 Escherichia coli strain DMP-13-4-3 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63308 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 63247 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 63186 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 63125 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 63064 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 63003 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 62942 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 62881 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 62820 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 62758 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 62697 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 62636 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 62575 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80486-78810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUTM010000003.1 Escherichia coli strain DMP-13-4-3 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80485 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 80424 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 80363 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 80302 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 80241 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 80180 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 80119 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 80058 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 79997 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 79936 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 79875 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 79814 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 79753 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 79692 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 79631 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 79570 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 79509 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 79448 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 79387 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 79326 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 79265 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 79204 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 79143 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 79082 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 79021 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 78960 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 78899 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 78838 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //