Array 1 59154-59701 **** Predicted by CRISPRDetect 2.4 *** >NZ_AELQ01000042.1 Methanobrevibacter smithii TS146E Contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 59154 37 100.0 35 ..................................... ATGGGTGATGGTGTGGGATGGTTTTTTTATATTGG 59226 37 100.0 37 ..................................... ATTTTTTGGATTGTTGAACCCACGACCGTCTATATAA 59300 37 100.0 35 ..................................... GATTACTGAATGGTTGGTTCATGATTTCTCTTAAT 59372 37 100.0 35 ..................................... TCTACCAACCAACCCCCACAGTGGGGGATAATGAC 59444 37 100.0 35 ..................................... TCTTTCGGCTCTTGTTAGGCGTGTATAGGATTTAT 59516 37 100.0 37 ..................................... TCTAAAAATAAAGTATCGGTGTTTTTCCCCTTATACC 59590 37 100.0 38 ..................................... ATTAATAGATAATTCATTAAACTGTATTTCACTTGCAA 59665 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 100.0 36 ATTGCAGAAAACCATCTATTAAAATAAGGATTGTGAC # Left flank : GATGAAGGTCAAATCAGGATTCAAGATAAAGCTCGTAAACTATTAATAGCTAAAATAATGAATAAACTAAACTCTAAAATTAACTTTAATGATAAAAAAATGAGTTATGAAGATATAATTCTTTATCAAGGCAGATTACTTGGTAAATATTTAACAGGAGAAGAGAAAAATTATGTTGGATTTTCAAGAAGATGGTGAAGATCAGCTAATTTTTCTTAAAATAATATTTTTTTATAAATAATTAATACTTTTTATTTTTCAGATAAATCAATATTTTAGCTAGTTTTCTTTAGATTACTTTTATCATGTGGTTTGGATGATGATGATCTTAGATTATATTAATTATTGCTTTAATTTTAGCTAGTTTTAATAGAAAAGTATTTAAATAATTTGTGCAATAATTTATATACAGAGGTTGGGTGAAGTAAAGTTCACAGAAACTGTCACTAAATACAAGTTTTTTGCATAAAAAAGTGAAATTTTAAGAAATTTTCGTGGCT # Right flank : CATAATATCACGTGTTTTCTCATAAGTACTGTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAGAAAACCATCTATTAAAATAAGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 41-514 **** Predicted by CRISPRDetect 2.4 *** >NZ_AELQ01000043.1 Methanobrevibacter smithii TS146E Contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 41 37 100.0 35 ..................................... ATTGTATGGATGTCTAAAATAATAGGGTTTAACCT 113 37 100.0 35 ..................................... TTTTTTTCATAAAATTTTAAAGCTGCTGGATCTAT 185 37 97.3 35 ...........T......................... ATAATAGGATTGGCCTTTACCTTCCTATAGGTTAG 257 37 100.0 34 ..................................... GACTCAAATTCTTTATTCACCATAAAAGACCTCC 328 37 97.3 38 ..........T.......................... TTATAGTATGTTGCATCGTCAGTAATACAAATAAATAA 403 37 97.3 36 ..........T.......................... AATTCAGCTGTTTCTGTGTTTGTGGTGTGTATTTCG 476 37 83.8 0 ............T.....C.....C....C..A...G | AA [508] ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 96.5 36 ATTGCAGAAAACCATCTATTAAAATAAGGATTGTGAC # Left flank : GTGACAATTCTTCTTCTGAGATGGTTCTCTTATGCATGTCA # Right flank : GTTTTTATCATGATTAATATTTCCAGTTGATTTTTATAAAGTAAATTCTAAAAAGATTATTAACAAATTGTTGCAGGGTTATATATGAATGTTGAAAGTTTGCAAATCATTTCTAAATTTATGAATGATTATGAATATGAAAAAGCTATGGAATTATGTGATGAGCTTTTAAAAAAAGATAATGAAAACAGCCATCTTTGGGCTTTAAAAGGATGCTGTTTAAATCATTTTGAAAAATATGTTGAAGCAATGGAGTGTTACAACAGATCCCTAAGCGAGGATGATGAAAACCCTTTTATCTGGTTTCATGTGGGTAAAATTTTAATGGAATATGATTTATTTGATGATGCTTTGGAGTGCTTTAACAATTCATTGGAAATTAATCCTGCTGATGATATGGCGCTGTATTCAAAAGGGGAGTGCTTAATGTTTAAAAAATCATATACTGAAGCAATTACCTGTTTTGATTTGGCTATTGGATTTAATCCCAAATATTTGAA # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAGAAAACCATCTATTAAAATAAGGATTGTGAC # Alternate repeat : ATTGCAGAAATCCATCTATTAAAATAAGGATTGTGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //