Array 1 7982-5368 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFEJ01000002.1 Listeria monocytogenes strain 2842STDY5753991, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7981 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7915 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7849 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7783 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7717 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7651 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7585 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7519 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7452 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7386 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7320 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 7254 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 7188 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 7122 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 7056 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 6990 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6924 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6858 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6792 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6726 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6660 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6594 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 6528 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 6462 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6396 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6330 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6264 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6198 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6132 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6066 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 6000 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5934 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5868 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5802 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5736 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5670 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5604 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5538 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5472 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5406 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5371,5374,5379] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //