Array 1 244813-243046 **** Predicted by CRISPRDetect 2.4 *** >NC_010939.1 Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 244812 28 100.0 32 ............................ TCAAAGCGAAACGGATTGCCATGAATATCTAA 244752 28 100.0 32 ............................ TTCCACGATGATTTAGCTGCTTTGATTAAAGC 244692 28 100.0 32 ............................ TTTGATTTGAAACTGGTCGAGAACGCTAAAGA 244632 28 100.0 32 ............................ AAACAAGAACTACAAGAATATTTTGACTCACT 244572 28 100.0 32 ............................ TTTGAATCGAAACCAAACTTATTTTTAATCTT 244512 28 100.0 32 ............................ GAACGTAAAATCAATATGTGCTATGACCTATT 244452 28 100.0 32 ............................ AATATATTGAAACAGAGGTAAAGACGTATGAA 244392 28 100.0 32 ............................ AAGCGAAACGATAGCAGTTTTAGCATCAGAAA 244332 28 100.0 32 ............................ AAAAAAAGGCGGTGGTAATGGCGAGAATAATA 244272 28 100.0 32 ............................ TTTGCGCTTAACCAATCGACTGTACAGCCGTT 244212 28 100.0 32 ............................ ATTTTCAAAACCTAAAAACTCATCATCCTTCC 244152 28 100.0 32 ............................ ATTTTCAAAACCTAAAAACTCATCATCCTTCC 244092 28 100.0 32 ............................ AGTTGATATCCACGCAATTTGACGGATTTCTT 244032 28 100.0 32 ............................ TGACCAAAGCTGGCGTGATTTTTACGGTAGCA 243972 28 100.0 32 ............................ TCTTTAAATCGGGTTTAAAGTGCGGTCAAATT 243912 28 100.0 32 ............................ ACAATAGAGGAATGTAATTCGCCGGTTTGTGA 243852 28 100.0 32 ............................ ATTAAATAAAGAGAGGAAAAAATGAGCAGTAG 243792 28 100.0 32 ............................ ATAATGAGACCTTTTGACCGCCGTAACAAGCG 243732 28 100.0 32 ............................ GTCGAACTCTTGATAAACTTGTGCGTCTCGTA 243672 28 100.0 32 ............................ AATGCACATTAGAAAAAACAAGGTTAGGAAAA 243612 28 100.0 32 ............................ AAATAATTTGTCTTAAACCGGCATAAATTACT 243552 28 100.0 32 ............................ AACGAAGAAAGCGAAGAATACACGCCAATCCA 243492 28 100.0 32 ............................ CAAGACCAAGATTGCAATTACTGGAAAAACGT 243432 28 100.0 32 ............................ AACGAAGAAAGCGAAGAATACACGCCAATCCA 243372 28 100.0 32 ............................ GCCCGAACAAGATTCAATACTCTATTGATACC 243312 28 100.0 32 ............................ TTTAAATGGAAAAAAGTCCTCTTTCTGACAAT 243252 28 100.0 32 ............................ TTTGAGAAAAAGGAGAAAATGAAATCTCAAGC 243192 28 100.0 32 ............................ AATGTTGAAAACACTCGGTTGGTGGGGGAAAA 243132 28 100.0 32 ............................ TCTAGTAAAAGTCCAAGCTGATGACTGACTGC 243072 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================ ================== 30 28 99.6 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTACCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGCAATTTTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAATCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA # Right flank : TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAAATCGGTTGTGACTTTTTTAGCCCTCAAAGTGAATATCGCCCCGTCGAATATCTACAGCAATGGTGTCGCTTTTGGTTTGACGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //