Array 1 108503-105542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBX010000009.1 Salmonella enterica strain F2-33 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108502 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 108441 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 108380 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 108319 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 108258 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 108197 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 108136 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 108075 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 108014 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 107953 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 107892 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 107831 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 107770 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 107709 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 107648 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 107587 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 107526 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 107465 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 107404 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 107343 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 107282 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 107221 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 107159 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 107098 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 107037 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 106976 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 106915 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 106854 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 106793 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 106732 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 106671 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 106610 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 106549 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 106488 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 106427 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 106366 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 106305 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 106243 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 106182 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 106121 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 106060 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 105999 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 105938 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 105877 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 105816 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 105755 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 105693 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 105632 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 105571 29 96.6 0 ............T................ | A [105544] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126135-124762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBX010000009.1 Salmonella enterica strain F2-33 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126134 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 126073 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 126012 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 125951 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 125890 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 125829 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 125767 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 125706 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 125645 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 125584 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 125523 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 125462 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 125401 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 125339 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 125278 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 125217 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 125155 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 125094 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 125033 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 124972 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 124911 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 124850 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 124789 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //