Array 1 73645-75201 **** Predicted by CRISPRDetect 2.4 *** >NZ_POJM01000049.1 Streptococcus suis strain 2089 SS_2089_Contig49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 73645 32 100.0 34 ................................ GCAGGTAACTGGACAAGTTGTTGCAACAGTGAGT 73711 32 100.0 34 ................................ TCCGCAACTGTTTCTGATGATGCCGTTGCCTACA 73777 32 100.0 34 ................................ ATCAACCAACACTCCATACGATACAGGTGATAAT 73843 32 100.0 34 ................................ AGACAGTCCCAGCGGTCAGACTTGAACAAGTTTA 73909 32 100.0 35 ................................ AATAAAATCAAAGTCAGCTTGTGAATAGGCGATAA 73976 32 100.0 33 ................................ ACTTCGGCAGCTCGAAAACCTTTGGCATTTAAG 74041 32 100.0 34 ................................ CCATCCAAGTTCACGTTCTGGTTGATTGTATTGT 74107 32 100.0 34 ................................ TCTCCGCCTCGATAATGTGGATGTAAGTGGTCTA 74173 32 100.0 35 ................................ CAGTTGATAGCTCTGTACCTACAATTGTTACTTCC 74240 32 100.0 36 ................................ ATCAATGTTTATTCGCTCATTCAGTGCCTCTAATTC 74308 32 100.0 33 ................................ TCCTAAACGCATATGCCTAAAATGTGGGAAAGT 74373 32 100.0 34 ................................ TCAAACAAGATATAGAATGTACATACTTTATAAA 74439 32 100.0 32 ................................ ATCTAATAAGATATACAAGATAGACACTAATC 74503 32 100.0 33 ................................ AAACTTTGAATAACCGAATTGACAGAGAAGTTA 74568 32 100.0 35 ................................ TGGGAACGGAACTGACATCTTACCTGAAATAGAAT 74635 32 100.0 36 ................................ CGCATAATCTCGGAGCCCTGCCTATTATTGAATACC 74703 32 100.0 35 ................................ CAATAATTCCTGCTATGCCGTTTGCGGTTGCGTTC 74770 32 100.0 34 ................................ CGTAAGGTTCAACTTTTGAACTATTCAACTTCCG 74836 32 100.0 34 ................................ GATTTAAAAACAATCCAATCCTTGCATCAAAACC 74902 32 100.0 36 ................................ ATCGATACGGTAGGTCTTGCCTTCCGGAGTCACGAT 74970 32 100.0 36 ................................ GACGAAAACAGGTACGCAGTCAACTATCTTCACAGC 75038 32 100.0 34 ................................ AAAGAAACTGTTTCAAGTTCCCCACACGTGTCAC 75104 32 96.9 34 ..............................G. AACGTATCGACAGACTAGCTGCTCGGACGGACCG 75170 32 78.1 0 ....T......TG..TA.....A........C | ========== ====== ====== ====== ================================ ==================================== ================== 24 32 99.0 34 GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Left flank : GCAAAGGCTATTCGAGGGGAGTTGGACAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGACAACGTGTGCAACATTCTGTTTTCGAATGCTCAGTCACCCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGATAAGGAGCAGGATAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACGAGATACTAGTTATGATCCTGATCAAGGAGTCCTTCTGTTATAGATTATCTCTGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGTATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATAGCGCT # Right flank : CTGTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTAACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCGTCTGGATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //