Array 1 107630-103002 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMOG010000003.1 Bifidobacterium adolescentis strain 1001275B_160808_D1 NODE_3_length_183499_cov_80.3317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================================================== ================== 107629 29 100.0 32 ............................. TCGACCTGCCGAACCTCAACAACGCGGAACTG 107568 29 100.0 32 ............................. CTGTTAAACATCACAAACGGCCGTGAAAAGAG 107507 29 100.0 42 ............................. TAGAGATAATCCATGACAACGAAACCAATGCCCGCCAAACCA 107436 29 100.0 32 ............................. AGCTCGATGCACGCCACTCAACCGCATTACCG 107375 29 100.0 32 ............................. ACGCGCATCAGTGCGACTTCCTCGCAGTTGAA 107314 29 100.0 32 ............................. CGACGAGGAACTTGCCCAGGAAACATACACTG 107253 29 100.0 33 ............................. TGTTGAATCGGGCGTATCCGTGCGAGGAGTGGC 107191 29 100.0 32 ............................. TGTTGCCGGTGGCTGTGTCGATAAGGTCAAGC 107130 29 100.0 32 ............................. TGAACGTGACCATGCAAGTGCTCGGAGACTAC 107069 29 100.0 32 ............................. GCAAGAGTAAGTCACGTGGTCACGGCAGTGTC 107008 29 100.0 32 ............................. TGATAGACGACCTTGTCGTTGGCTTGGAATGC 106947 29 100.0 32 ............................. CGTTTCGAACACGGACGGACATGTTTCACAAT 106886 29 100.0 32 ............................. GCAGTGAACAGCCTCTGATAGCATGAAGCCCC 106825 29 100.0 32 ............................. GACTTCGAGCTGGTCAGGGAGAAAGCCCACGC 106764 29 100.0 32 ............................. ACTTACGATTGACGCCGATCTGGACGCACGTC 106703 29 100.0 32 ............................. GTCTGGGTTGGTCATGTAGACGGTGAGTTTGC 106642 29 100.0 33 ............................. AGTCAGCAATTGTCGAACACTTTGGCGACGAAC 106580 29 100.0 32 ............................. CGATTTGCCGCAGTATCTCAATCATATCGAAA 106519 29 100.0 32 ............................. GGAATACTGCAATTTTTGACGTGTCTCGCGCA 106458 29 100.0 32 ............................. GCCGAGGATGATACCGTGTTTACGCTTATCCT 106397 29 100.0 32 ............................. CGTCCCAGGCGGTTCCGATCGCCATCGACCAG 106336 29 100.0 32 ............................. TGCGCGGATCCGATGCCGTTGCCGCTGAAGCA 106275 29 100.0 32 ............................. CAGTGGACAGTGCAACACAATACCTTGTATGA 106214 29 100.0 32 ............................. AGTACGGCGTTGGCGAACGGATTAGGGGTAAT 106153 29 100.0 32 ............................. CATTGGACGCGCACAATCTTACCCAAGTCGGT 106092 29 100.0 32 ............................. CGATTACGGTGGTCAGAAACAGCTGTTCGACA 106031 29 100.0 32 ............................. GACGGCATCCTGCGTTGCGGACTTGATGAAAC 105970 29 100.0 32 ............................. TCCAATTCATTCACAAAATCACTATCACCATA 105909 29 100.0 32 ............................. CCGACGTGCACCTCGAGGTCGCCGGCGTCAAA 105848 29 100.0 32 ............................. GGACGGTCCTGCTGGTCGAGCGCGACCAGCAC 105787 29 100.0 32 ............................. TGCACGCTGCCGCAGTTGCGGTTGGCGACGAT 105726 29 96.6 32 .......................A..... ACGCGAACCTCAGCCGCCCACTGACCTTGAGC 105665 29 100.0 32 ............................. TGTTCTGCAATGCGCCGAAGGACGCGTTGAAT 105604 29 100.0 32 ............................. GTGTCGCGTGGCGATCTTGTGCAGGTGGTGTC 105543 29 100.0 32 ............................. GCCGAGACCATCAAGAAGGCCATGAACGACAG 105482 29 100.0 31 ............................. CAGCTGGGTGTGGTCCGGACGAGACAGCATG 105422 29 100.0 32 ............................. GTCGCGGACATGTCATCAATCCATTCATCGAA 105361 29 100.0 32 ............................. ACCGGCCTGTACGCGTCCGGCTGCTGGTTGTC 105300 29 96.6 32 ..........T.................. CCCACAGGCGGGGACAATCAAGGTTCGGACGT 105239 29 100.0 32 ............................. GTACACCTGCGTTTTCTCGCCGGTCATGGCAT 105178 29 100.0 32 ............................. AAGGTAGGATTGTTGTAGTTGTTGACACCCCC 105117 29 100.0 32 ............................. GTCGCCCTTGCTTGCCAGTGGTCGAATATCGG 105056 29 100.0 32 ............................. GGAATGTCCGCAATAAGGGCAGGACCAGACGA 104995 29 100.0 32 ............................. CGCAACGTGCCGACGCAGAAGGCCATGGACTT 104934 29 100.0 32 ............................. AGCGAAAACGGCACCAATTACCCATGCCGAGC 104873 29 100.0 32 ............................. ACACTGGATCGTCTTTATGAAGGAGGATACGA 104812 29 100.0 32 ............................. TCGACCGGAGCGCATACCCGGCATTGTGACCA 104751 29 100.0 32 ............................. TATGGACGCTCTACCCGAAACACGTGGCCAAA 104690 29 100.0 32 ............................. GACGTGGCCCCAGTTGATGCTTGCATCCATAG 104629 29 100.0 32 ............................. TGCTAAACCTTGGCGGGTATACAATCACGAAA 104568 29 100.0 32 ............................. AATCTCACCAAGGATGAAGCGCAGTCTCTGAT 104507 29 100.0 32 ............................. CAACGAGAGGTTAATTAACGAACGCGATTGGC 104446 29 100.0 32 ............................. CCGCAGTTCGACCTCGACTTCATCGGCCGACT 104385 29 100.0 32 ............................. ACATGGCTCCGCGACCAGTGGGAGACATGGGC 104324 29 100.0 32 ............................. TTGGCTCCCTGGATGGTCTTGTTGCCGTCGGC 104263 29 100.0 32 ............................. TGGTCGTTGCCCTTGGCGTTGTGTTTGACGGA 104202 29 100.0 32 ............................. TGATCGAGGAACGCCGCAAAGTCTCCCAGCTC 104141 29 100.0 32 ............................. AGATAAAGAGCAGCTTTGTCTTTCCAACCGTT 104080 29 100.0 32 ............................. GGACTCCTGCAAGGCATCGTCGCAAGCCTGCC 104019 29 100.0 32 ............................. TTGTGACTTTGGCCGAAGCTGCTACCCCGGTT 103958 29 100.0 32 ............................. GACAAGGTGGTCTACGAATTCGCCACGAAACT 103897 29 100.0 32 ............................. CGTGCTCAAGCCTTGCAGAAAGTCTTGCACAA 103836 29 100.0 32 ............................. GTCGAGATCTTGCATGATTGGCAGCAGATTCT 103775 29 100.0 32 ............................. CGGCTGTGGCCGCAGATGGCCGACTCGGGCAA 103714 29 100.0 32 ............................. GAAACCGTCCAAAAAAACGGTGGCAAAACAAC 103653 29 100.0 32 ............................. ACATCCCAGTCCAATTGTGGCCGATGGACGTA 103592 29 100.0 32 ............................. AACGGCCCGTGCGAAAGCCTCGAAGCGTTCTG 103531 29 100.0 32 ............................. GTCTTACCGAGACCACGCGCACTGATAATGAA 103470 29 100.0 32 ............................. ACGGATAACAACGGCGATATGGTAACGGTGCT 103409 29 89.7 32 ...T........TG............... ACTTAAATTTGGACGTCAGGCGCCCAGATTGT 103348 29 89.7 166 ...T......T.....T............ AACGGCACGAAACACATATCCGCGAGTTATGGGTGCTCGACATATCGGGACTGCATCAGATCCAACTGAAATAGAAAGCCCGAAGATAACCCCCCGACTGATGTTCCAGTCTTGAAAGCTGGTCGCGTGGGATCTTCGAGCAATCCAATTCTACCACCACGGCACC T [103321] 103152 29 89.7 32 ...T...............A....G.... CACGACATGCAGGACTACCAGCCACTCGGCAG 103091 28 93.1 32 ...-.......G................. GCGCTCGAAAACAAGCTGCGCCAGCGTTTCAA T [103084] 103030 29 86.2 0 ...T......................TGT | ========== ====== ====== ====== ============================= ====================================================================================================================================================================== ================== 74 29 99.2 34 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : TTGGGCTTTGGGATGATAAGCAGGGCGAGGTTTCTGCAGGCAAGTCCTACTCGGATAATGACGAATGGGATGGTGGGACATGGTAGTGATTGTGCTGACTGCTTGTCCTGTGGGATTGCGGGGTGATCTCACTCGTTGGTTGCTTGAGATAGCCCCAGGAGTTTTTGTGGGACATATCGATGCTCGAATTCGAGATAGGTTATGGGAGAGAATCATTGATTTGCTCAGGGATGGTCGTGCCGTAATGGTTTATTCGGCCAGAAATGAGCAGCATATGGCTTTTAAGGTGTATGGGGCTGACTGGTCACCGGTCGATTGCGATGGATTGCAATTGATCAAACGTCCTAAGGAAGCAAAAGAAGGATCCTTTGTTGGCACTCCTAGAAAAGGATGGAGTAATGCGAGCAAATACCGAAAGGCAAGGAAATTTTCAAAACGAAACTGAATGAAAAACAGCCAGTTGTCCTTTCTTTTCCTTGGAATTATGCTGTTTTCGAAGT # Right flank : ATTTGTCAATCTATCAGTCGCATCGCATGTGCGTTAGCTACACTTATCCGCATAAGTGTAGCTAACGTTAAAATAAGCTACATTTATCTCGATAAGTGTTGCTTACGAGAGTTTTTGCGATGGATAATAATTTCGGCCATTTCGATATACATGAATCCGTAGGGGCCACAACGACTTGTGTTTCCGATTTACAAGCGTGGCTTTGCTTAAGAACGTGATTTTGTCCGGGGAACGATGCGCTTGACACATACTGGCACTACCAACGGAGGAGCACCATGAAATACGAGATTGCGATTTGCAAAAGTATGAAACGTAAGAAAGGACGCAGTCGCGCTTCGATATGTTTTTGATTGCGTAACGGCGCGACGGCATCGCTTTTGCGCATGTCGGGCGCTTCGTTGCCGCAACCGGCGTAAGATATCTGCGAATGTCAAACATAAGCGAGATATCTGAAGGAGAGAAGATGTCAACAAACGAAGCAGCATTGCCGCAGTCGACGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //