Array 1 47625-52753 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNRM01000007.1 Alkalimonas amylolytica strain CGMCC 1.3430, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47625 28 100.0 32 ............................ TCTGACCGGTCATAGAAAGGCCGGTCAGTATG 47685 28 100.0 32 ............................ TCGCACCCCTACAGAGCGTGAACAGGTATGTA 47745 28 100.0 32 ............................ AAAGTTCCTCAGCATTGCTCGGAGTTTGAAAC 47805 28 100.0 32 ............................ TCACGGTAGTTGTGAGATAACTGAAGGCGCAA 47865 28 100.0 32 ............................ GGCAAAGTCACGACCAATTTGGTTGGCTGCAG 47925 28 100.0 32 ............................ TTTTGGCCTGTCGGCCGAGTGCGAAAAAAAAT 47985 28 100.0 32 ............................ TAGGGTAATATTGATATTGTCGAGGCGCTGCT 48045 28 100.0 32 ............................ TCCGGGCTAAAAACGCCACCGGAAGTGACACG 48105 28 100.0 32 ............................ TCGACAAGCACGCCCGTAGACGAGTGAATGGG 48165 28 100.0 32 ............................ TCCAAGTAAGATCGCCAGAGTCGGGATCATAT 48225 28 100.0 32 ............................ ATACTCCAGAGCAACCAGCAATTCACCAGTTG 48285 28 100.0 32 ............................ ATTAACGATGTTGGTTTTGGCACCATCCTGGA 48345 28 100.0 32 ............................ AGCTAATGAGATACGTTCAGGCCTGCCCCGTT 48405 28 100.0 32 ............................ TTCGCCAATATTGCCTGAGCCTATGGAAGATC 48465 28 100.0 32 ............................ TGCTTTGGTGGTTGGTCGCAAAAGCACAAATT 48525 28 100.0 32 ............................ TTGCCAGCCTACAGGCAAGCCATGGCCGGTTT 48585 28 100.0 32 ............................ AGCACTGGCAATTTGAAGTGCGCATTGTGCAG 48645 28 100.0 32 ............................ AATAACTTTTGCGCTTCCCGAACAGACAGGCC 48705 28 100.0 32 ............................ AGCTCCGGCAAAACCATCAGCTTTGGTGATGT 48765 28 100.0 32 ............................ AGATCGCTCAGAACGAGCTGCAGCAAGGCCCA 48825 28 100.0 32 ............................ ACAAAGAAGCATCCGAAGCCCTGCGCGAGGCT 48885 28 100.0 32 ............................ GATGCGCGTACAGTGCTGAAGATCCGCCAACA 48945 28 100.0 32 ............................ TTTTGGCCTGTCGGCCGAGTGCGAAAAAAAAT 49005 28 100.0 32 ............................ TGGGGCAGCCGCGCCATCAACGGCAGTTACTT 49065 28 100.0 32 ............................ TCTGGTTGGTATGGCGGTCTCGACTATCGCAC 49125 28 100.0 32 ............................ TGCATTGATAGGCCGTTACGGTTTACCTGCTT 49185 28 100.0 32 ............................ ATTGCAGGCGGCAGCATTGACCGCATCAACGA 49245 28 100.0 32 ............................ CATCCGAGCAATAAACGCCGCAAACTGGCCCT 49305 28 100.0 32 ............................ ATGCAGACAACCAGCGTGAGCTGGTGGGATGC 49365 28 100.0 32 ............................ GTCGAGCATCGTATGTTGCTCATCGGCGGTTT 49425 28 100.0 32 ............................ GGACAACCAGCGCCAGATCGTGTGACTATCGC 49485 28 100.0 32 ............................ AGTCTAGGAGTTTTTTGTAACTACTTTCTCCC 49545 28 100.0 32 ............................ AGAGGGTCAGCTTATCCGGCTAACTACGCTAA 49605 28 100.0 32 ............................ GTACTGAGGTTATCCGCGTTGTGTCAGACTGT 49665 28 100.0 32 ............................ ATAAGGAATGAGCATGAACCACTACACCAAAT 49725 28 100.0 32 ............................ GGCAGCAAGAACGCATTCATGCGGAACGTCAG 49785 28 100.0 33 ............................ AGTGCTGAAAACCAAAGAAGCTCAGTCCATGAT 49846 28 100.0 32 ............................ TCCACCGGTGTGCGTAAGCGGACAGCTGGAAA 49906 28 100.0 32 ............................ ATCCTCAATGCTCTTGAATAAGTGCGGGGCTC 49966 28 100.0 32 ............................ AGGTAAAGCAGGCGGCCAGGGGAGACCATGCC 50026 28 100.0 32 ............................ AGGTAGCCCCCGGCGCTTACGAGGTTGACCCT 50086 28 100.0 32 ............................ TTCCAGCCGGCAGCAGCACTCAGCTAATGCCT 50146 28 100.0 32 ............................ TGGACTTTGCGAGGCAGTTTGAGCAACTGCTC 50206 28 100.0 32 ............................ CAGGGCCAACCATCTGGCACTTTCACCGGTGC 50266 28 100.0 32 ............................ TGAGAGATACCCAGCTCAGTAATGGCGTAAAT 50326 28 100.0 32 ............................ ATGGCCTGGACCCACTAACCGCCCAAGGTCTA 50386 28 100.0 32 ............................ AGCGTCCAAAATGAATTTTTAACAGATCAATA 50446 28 100.0 32 ............................ TGCAAGAGCATCAACCAGCACTAACAATAAAC 50506 28 100.0 32 ............................ CGACCCAACTTGCAAATCGTTGCTTAAGGAAA 50566 28 100.0 32 ............................ CGAGGACGACAGCCAGTGGTTGCCCTACGACA 50626 28 100.0 32 ............................ AGCTCGCCCAGGCGCTGACTGTTGATGGTCTT 50686 28 100.0 32 ............................ AAAGGCCGGGCACTATTGGGTAAGGAGAATGC 50746 28 100.0 32 ............................ TAAACGGAGAAAATACGATGCCAACAATCAAA 50806 28 100.0 32 ............................ CTGACCGGGCACGTAGGTCCCCAGCTTTGTCT 50866 28 100.0 32 ............................ ATTACGAAGACTACAACCGAAGGGGCCAGCGC 50926 28 100.0 32 ............................ ATTGTTTAGTCCTAAACTTAGTTGTCGGGTTT 50986 28 100.0 32 ............................ ACGCTCGGGGGACTGGCGCGTAGTAAATGCAC 51046 28 100.0 32 ............................ GCGTTAATGTCGCGTGCTCACCGTTAGGTACC 51106 28 100.0 32 ............................ TAAGGGGGTAACTGATGGCTAAAATCCTAGTT 51166 28 100.0 32 ............................ GTTGACGGCCGGCGCTTTGCCAGAAGCAAAAG 51226 28 100.0 32 ............................ GTTGCGGCCGTGGCAGCTCTTGGGATTACACA 51286 28 100.0 32 ............................ TTGCTGACATTACCCTTCATGAATGCCAGCAG 51346 28 100.0 32 ............................ ACGCTCCCCAACAACCCCAGCAACAACAGCAC 51406 28 100.0 32 ............................ TGAGACGGCCAGATAAGCCGCAGCCATCGCCC 51466 28 100.0 32 ............................ ACTTGGACCGGATGCATTGACGTTATTATCTT 51526 28 100.0 32 ............................ AAAGGCCAAGTGCCTGGTTGAGCCGTTTGTGG 51586 28 100.0 32 ............................ GTGATACTGGCACCACTGAGCAGCTGCACGGT 51646 28 96.4 32 .....A...................... CTTACCGGCTAAATGAAATATCACCGGGCACA 51706 28 100.0 32 ............................ TGTCAGCGCCCTGCATGCTAATACGCAATCAG 51766 28 100.0 32 ............................ ACATAAACAAACTGTGCGGAATAGTTGATCTA 51826 28 100.0 32 ............................ TCTTTATCGTCGCGCTTAATCATTGGCTTATT 51886 28 100.0 32 ............................ TGAGCGAAAGCCGCCGCCTGTCTGTGCTCCGG 51946 28 96.4 32 ........T................... TGTGGCCAGTGGGTGTCGGGCAAATCTTCGTT 52006 28 100.0 32 ............................ GAATGGCCTGCACCATGGCGGTGTTGAATAAA 52066 28 100.0 32 ............................ TGTCACGCCGCTAGCAGCTGATGGAAAAGCCA 52126 28 100.0 32 ............................ ACTTGCAGTAGCACGCCATATTCGGTGACTAT 52186 28 100.0 32 ............................ TGGCAGCCATCGGGATCACCGCAGCAAAAGCC 52246 28 100.0 32 ............................ CAATTTACGTACAGCCTACGCACGTATTGATC 52306 28 100.0 32 ............................ AACCCCACAGCAGCCCCGTGGTTTATTGTCAG 52366 28 100.0 32 ............................ GGTAGAACCGAGGCTGTTTGTATTCGATTTTG 52426 28 100.0 32 ............................ GTGATACTGGCACCACTGAGCAGCTGCACGGT 52486 28 96.4 32 .....A...................... TGGGCCTGCAGGTCTTCATCCAGGGCCCCGGC 52546 28 100.0 32 ............................ CTATTGAGCCACCTATTGAGCCACCTATTGAG 52606 28 96.4 32 ...............T............ GACCGGCGTGGTTTCGGCGGGAACCGTGGGCA 52666 28 100.0 32 ............................ TTAACCGCCGCGATACGTATCTTTTTCAGCAA 52726 28 96.4 0 ..................G......... | ========== ====== ====== ====== ============================ ================================= ================== 86 28 99.8 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : GGAAAAACTCATGGCGCAGAGTTGGTTAAAGGGGCTGCGGGATTATTGTCAGTGTAGTGATGTTTTGTCAGTGCCGAAGGATGCTAAGCAGCGTTATTTTGCCAGGCGCCAACTTAAGAGTGCGCACAACAAGCGCCAACGTTCAGTTGGTAAAGGCTGGTTAACGCATGAGGAGGCGATGGGCAAGATTCCTGATGAGTCACAAAAACCACTTAAGTTACCGTTTCTGCAACTAACCAGCCGGGGCAATAAACAGCAAATGAAAGTGTTTATTGAGCAGGGGCCGGTAATGGAACAGGCAAAAGAAGGCAGTTTTAATTCATACGGATTAAGTCGATTATCTGAAAAAGTAACAGTTCCTTGGTTTTAACCCCTTTTTTTAGCTAGCGCCTGCAGCCCTTACCATATAAGGGCTGCTTTTTTGCCCTCATAAAAAGGGTCAATCACGCATAGCGCTGAATGTTCTTTAATAATCAGGTTATTAGTGCTTAAATGCACTA # Right flank : AACTGAGCAACAACAAGCAATACTGCATTTAAAACGCGCCGGCTAAATCGCTGTCGAAAATGACTCCGCTGAACCCTGACTGCTCAAAAAGTTCTTTGAATGCTTCTGATACAAACAAAGCATGAAAGCCATACATAGCAGACTTGAAAATCCACTTTTTGGACACATCCGTCTTATCAAATACTAATTGCTCTAAACCGCACTCATAGCCATCTTCAAAGTGTTTTACGGTTCGGGTTTTATCTTCTTGCCCAAACGTCAAAGGAATATAGATGTACATGGGTTTATTTGAAACACTAAGCGGCAGAAACTCACCCTCACGACTTAGCGGCTCCTGAAAGACACTGTAAGCCTGCTTAGTCATCACTAAATACGATCCCCAGTATGAAATATCTGGAATGCTTTGGCCTTTTTGATAAAAAGGGGCAAGTTTGCATTCGGTGTGCTTCCAGCGTGCGGATAAAGACTCGTTGGTTCTGGGTTGGCTTCGAATCAACACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //