Array 1 81412-79815 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWG01000012.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-009 NODE_12_length_192918_cov_41.4972, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 81411 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 81350 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 81289 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 81228 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 81167 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 81106 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 81045 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 80984 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 80923 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 80862 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 80801 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 80740 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 80679 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 80618 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 80557 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 80496 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 80435 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 80374 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 80271 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 80210 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 80149 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 80088 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 80027 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 79966 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 79905 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 79844 29 96.6 0 A............................ | A [79817] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 98796-97670 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWG01000012.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-009 NODE_12_length_192918_cov_41.4972, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98795 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98734 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98673 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98612 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98551 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98490 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98429 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 98368 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 98307 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98246 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98185 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98124 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98063 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 98002 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 97941 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 97880 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 97819 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 97758 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 97697 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //