Array 1 38229-39732 **** Predicted by CRISPRDetect 2.4 *** >NC_017167.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 38229 37 100.0 36 ..................................... GCGAGGACTCAAGGCGAAGGAGGTGGCGGAGGCCAT 38302 37 100.0 38 ..................................... CTCTGCGTTCTTGATAGGGTCATCGATAAGGAGAAGAC 38377 37 100.0 35 ..................................... ACAAATCCCATCAACAAAACCAGCAACGATTATAT 38449 37 100.0 36 ..................................... CCCAATGGTTCCTACTCAGTTAGCTGAACACTGGAA 38522 37 100.0 35 ..................................... ACCCTCACCGACTGATTTCGAGATGTTCAATAATG 38594 37 100.0 39 ..................................... GGCGTAAAACCGGCCTCTTCCCATTCACGGGCGGCGCGG 38670 37 100.0 35 ..................................... TTATCACCCACGCTCACCCTGTCCGTGTCGCTCTC 38742 37 100.0 36 ..................................... TACACGCTATACGCTACGCCGGATCGCTTGCGGCTC 38815 37 100.0 35 ..................................... AAGACGCGGCGGCTCCACGGCATCCGCGACATTGC 38887 37 100.0 37 ..................................... TCGTATGAGGTGAGACAGCATGGCGAGCGTGCAACAA 38961 37 100.0 37 ..................................... ACTAACCTAAACTGATTCGCTTGACGATTCCCGTTTG 39035 37 100.0 36 ..................................... CATATCCACGCGCATACGACCGATCCGAATATGGTC 39108 37 100.0 35 ..................................... GGTAACAGGGACGGATGCGTGATGACAGAGCATGA 39180 37 100.0 37 ..................................... ATTTTCGTCTCCGACCAGATACCACGTGAGCTGCGAA 39254 37 100.0 37 ..................................... CATACCCGCTCTCGCCGTGTCATTCGGTGTTGGCGGT 39328 37 100.0 38 ..................................... TTCGCCATCGTCGTCGGTTACGGTCGGTGCGGGAGAGT 39403 37 100.0 36 ..................................... CTCAATGGGCCGAGAGACGTGGACAAAGGTTAGGTG 39476 37 100.0 35 ..................................... CAGCGCAAGGCCAGGACTTCGCCGACGCGCATGCC 39548 37 100.0 38 ..................................... GTCGATCAAGCCAAGTTACAAGGGATCGGTCGCTCAGT 39623 37 100.0 36 ..................................... CTGAACTATTTGGTGTCGTGGCTGAACCGCTTTGAA 39696 37 89.2 0 ..............................A.C.C.A | ========== ====== ====== ====== ===================================== ======================================= ================== 21 37 99.5 36 GTTGCTCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Left flank : GGACTTTCGTCCACGACGGCGCTCACCGGCTCCACGGAGGAGGAGCAGTTTGTGGAGGCGTGACGGCTCGACCCTGCGGGCGGATGAGCCCCACGATCTCGGCGCTCTGCGAGGATGGTTCCAACTCGGCATGGCACTCACTTTGGGGCCCGGTGTGGCCCCTTTTTTTGGTGCGTAGCTTCATGGGAGCAGGTGGGAGGATAAGGAGCGGGGGAATTCGGACGGCCCCGTTCGCAGACGCGGTCCGGGGCGAAACGGGGCGTGTGGTGCCGTGGATCACCGCAGTGATGGAGAAGCGGCGGGGGTAAGGAGCGCGAACCTGAATCGATGGCGAAAACCCGGGGGGTTCGCGAAATGCGAGAATTCCGCATGGGGGCTGGATTTTTGAGGACAGACAGGGTATGATGATAGCGGTTGGAAGGCGCGTGAAGGACGCGCGTTGCACAGGTTCGCGATTTTTCGCCGGAAAGCCGCGCCAGGAGCGGGCTCAGGAGAGTAGA # Right flank : ACAAAGAGGGCGGTAATCACCCGCCCTCTTCGAAGATCTTTAATCGTGGTGACGCATTCCGCTTTTAAGCTTCTATCCTCCAAAAGTCACCGTTCTGCAATTCATGGACAAATGTCCACTTCTCGCTTCCTGCTTCCACGACCCATGACTAGCAGCCCAAGGCCGCCCCGCCAGAGGGATCTCCACAGGCGTCACTTCCCGCGGAACTCGCGGTACCAATTCTCAAAAGATTTTTCGCTGCGTTGATGTCGCGGTCATGCCGCGTGCTGCACGCCGGGCACGTCCACTCCCGCACCGACAATGGCAGCTCGCTTATCACGTACCCGCACGCCGAGCACGTCTTGCTGCTCGCGTAAAACCGTGGTGCCACGATGAGTTCCGAGCCGTACCACGTACACTTGTACGTCAACATTCGCCGAAACTCGCCAAAACCCACGTCCGAAATGGCTCGCGCCAACGTTCGATTCTGCACCATGCCTCGCACATGCAGGTCTTCGATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 2812009-2812627 **** Predicted by CRISPRDetect 2.4 *** >NC_017167.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2812009 37 100.0 35 ..................................... GATAGCCCGGATGAGGCCCTGATGTGGCCCGCCAA 2812081 37 100.0 36 ..................................... CACTTCCGCAAACCGCGTCTGCTCATAGCTCGTGTC 2812154 37 100.0 37 ..................................... CCCACAAGCAAATAAATCTTGCAATTTCATTTCGAGA 2812228 37 100.0 35 ..................................... TGGATCATGCCCCAGGAAGTCCCGCAGACAATTCC 2812300 37 100.0 37 ..................................... ACCCACTTTGATGTGATGTCGTCACAACTGACTGTGC 2812374 37 100.0 38 ..................................... CACATGTTTGTGTAGACAGAATACTGGTCGGTATTGAT 2812449 37 97.3 34 ........................C............ GCAATCTGGGCGGTGTGAAAGTACCGCGTCCTGG 2812520 37 100.0 35 ..................................... GAATTCGAGCGGTGGAACAACGGCCCAGCGAATTA 2812592 36 91.9 0 C............................-C...... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 98.8 36 GTTGTTCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Left flank : TGGGTCGTGGAAGCAGGAAGCGAGAAGTGGACATTTGTCCATGAATTGCAGAACGGGACGCTTTGCAGCTTATCGGGAAGCAGGGGGCGTCAGCGTGAGCGCGGGATCGATTCGATGGTAACAAACGTTTGCGCGCGCCGAGGGCGGCCTCAAACCGCCCGTTGACGGGATAGCAATCGCGAACAGGGCATCGAAGCCTTCGAGCACGGGAACTGGCGTGGATGGGCCCTGTGTGGGTGCGGCCTTGTACAACACCACGGGGGCATCGTCAGTGAAGGCGGTGAAGAGACTAAGTTCATAAAGGGTGCGTTGCGCGAACCTGGATCGATGGCGAAAGCCCTGGGGGTTCGCGTTTTCCGCAAAAGGCGCGCCAGATCTGGACTTTTCGGAGATGAGGCGGTATGATGGGGGCATGGAAAGCGGGCGAAAACAGGGCTTTCTGGAGAGGTTCGCGTTTTTGCCCCGGGAAGCCGCGCCTGACGCGGGCTCAGAAGCGTAGC # Right flank : CTTGTCGCGGCTCACCGATACACATCCCTTCCCTTCGCCCGGAAAGCTTCTGCGCGCTCGCGCATTCCCACCGCGATCGCGTCGTCCGGCGTGAGCCCATGCGCTTCCGCATAGGCGCGCAGGTCCTGCGTGATCCGCATGCTGCAAAACTTCGGCCCGCACATAGAACAGAAGTGCGCCGTCTTGGCCGGTTCGGCAGGAAGCGTCTCGTCGTGGAAGCTCTCTGCGCGAATGGGATCGAGCGCGAGGTGAAACTGATCGCGCCAGCGGAACTCAAACCGCGCCTTGGATAAGGCGTCGTCCCAATGCTGCGCCCGCGGATGGCCCTTGGCCACGTCGGCCGCATGGGCCGCGATTTTATACGCGATCAAGCCTTCCTTCACGTCGTCACGATTCGGCAGCCCGAGGTGCTCCTTGGGCGTCACATAGCAGAGCATGGCCGTGCCGTGCCACGCGATCATCGCGGCCCCAATGGCGGACGTGATGTGATCGTAGCCCGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 3039367-3040646 **** Predicted by CRISPRDetect 2.4 *** >NC_017167.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3039367 36 100.0 36 .................................... GCTTTTCGCCCAAAGGTCAGCACCTAACCTTCGTCC 3039439 36 100.0 37 .................................... GTTTATTCACCTGGCCCCGGCTCGTTTGAGAATGAGA 3039512 36 100.0 40 .................................... GCCGAGAATGGCGCGCGTGTGATGAAGGCCGTCTTCACGG 3039588 36 100.0 37 .................................... GCTCCTTCGCATCCAAAGACAAGATTGATGGCTGGCA 3039661 36 100.0 37 .................................... GACCCGACAATGCGAAATGTGTGCGATGGTATGGCAC 3039734 36 100.0 37 .................................... GGCCAAGATCGTGCACAAGAGCGGCAAACCGTATCAT 3039807 36 100.0 38 .................................... GAATGTGCACGTCGCGCTCGTCGTCACCAGCGAGTTCG 3039881 36 100.0 36 .................................... GGGCGCCGCGGCCATGGGGCTTGCCATGGGCTCGAA 3039953 36 100.0 35 .................................... GACATCGGATGCAAGCAGGCCCTCAAGGCCGCCGT 3040024 36 100.0 37 .................................... GAGATAGAAGGCCTTCGAGTTCCCCCCCCTGGATGTC 3040097 36 100.0 37 .................................... GACATAGAGTGCTGGACGATCTGGATGATGCACTTGA 3040170 36 100.0 36 .................................... CTCCTCCCCGGTGGCCGCGAAAACCGCACGACAGCC 3040242 36 100.0 38 .................................... CAGGCATTCGTGCCATAACAGTACCCGTTCCTCACGCA 3040316 36 97.2 37 .............C...................... CTACGGATCGTCCTGCTCCGGCATCACACCGTACTTG 3040389 36 100.0 40 .................................... CGGGAATTGCTCCAGGAGAGCCCGGATCTCCTGTGCGCAG 3040465 36 100.0 38 .................................... CCGAGTGATGGGGGCGAAGTCGAACTCTCCGTTTTCCA 3040539 36 100.0 36 .................................... CAGTACCTCCTGCGCCTCCAGCACCACCATTTCCAC 3040611 36 91.7 0 .....................TT....T........ | ========== ====== ====== ====== ==================================== ======================================== ================== 18 36 99.4 37 GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAG # Left flank : AGGATGGCGTAAGGCGACTCGTGCGCCAGAAGCCCGGTCACGATCCCGGCCACGGTCACAACGAGCAGCGGATTGATGCGGAGCGCAAAACCCACGATGACCAGAAGTACGCCCATGACGACCATTGGACAACTCCTCGAAACAGAGCTGCGAATCGCCGATGCGCGATGGCGAACCCTCAGATATAAAAAGGTCAGTTCGTCCCGAAGAGCGGAAATCCTGCAGGAATTCTGCATGAAGCGGCGGGATGACAAGAGGGAATTTGTGATATGGATGCACCGGCACAGCCATGGGGCGTGCGATGGCGGCTTGCGCGAACCTCAATCGATGGCGAAAGCCCTGGGGGTTCGCGGACAGACGAAATTCCGCGCCAGGCCTGGATTTAGGACGGCTGAGATGGTAAAATGAGCGAGTGATGAGGTGCCGGATGGAGCGCCTTTATGAGAGGTTCGCGTTTTTCGCCCGGGAAGCCGCGCCAGAAGCGGGCTCGGGAGGATGGA # Right flank : GCCCGAAACCTACTTCCGATGTTTGTGCCGCCTGGCGCGTTGATCCGCCAAGACAGTCGCCGCCCGGGCTAGACGCCCCCCTCTGAGCGTCCTCCGTCCCAAATAGAAAGGCCACCGCCAGTCTTCCGCGCCTTCACGGACAAACCGCCGATGGCCTTCGTAGTATTTGGAGATCTGACTCAACCCACTCGTCCCAGCTGATTTCCCGCCGTTATCGCTCGTCAGGTCGCTTCTACGAAGCGAGGCTGGGCTCGCGTAAAACTAAAGTACTTTTCGATTTGAATCCGCCGCGAAACCATCACCTGTTCCACGCCCATGTGGCGCAGGCCGCCGTCGCGCAATCCGGGATGAGCAAGCATAAAGCGAATCGCCGCGAGAGTCGCGGGAGCCCTCCAGATAGGCCACGCGAGCGTAAACCCATCTTTGTCGTAATGACCTCCGACGATCGTCAACCAAGTGCGATCTGCCCGATTTCTCGGTGCTCCACTGAGCACGGATAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //