Array 1 199107-200031 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGIH010000001.1 Prosthecochloris ethylica strain N2 assembly_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 199107 35 97.1 39 ..................................T CGAATACCACCTGGTCCGTATAGAGGTCGAAGCCGTAGG 199181 35 97.1 40 ..................................T TTCCACCATTCCGACGACGTCGTCGATCGTCAGGCTGGAA 199256 35 100.0 38 ................................... GCAAACGTGTCGGCAGCGGCAACGGCCGCAATGCGGTT 199329 35 100.0 37 ................................... TTGAGGTTATTACTTTCTCCATCCCTTCACATCCACT 199401 35 100.0 38 ................................... TTTGCATTGGGATTAGTCGCAGTACATTCAAACCGCCA 199474 35 100.0 40 ................................... TCGTACCCCTCTTTTTCGTCAGGAAAGACTGCAGGAAAGA 199549 35 100.0 39 ................................... ATGGTATCAAGCAGGGGGACTAACCCCAAAATGGCAAAA 199623 35 100.0 39 ................................... GGTGTGTTCGGTCCGACTACGAAATAACTTTTTTCTCCG 199697 35 100.0 40 ................................... TTCCATTCGAGAATCACGGCCGCCTCATTGCCATCATAGA 199772 35 100.0 39 ................................... CATTGATCCTCCCGAATACGGGAGCGGCGCGACAGGTAT 199846 35 100.0 37 ................................... AAAGGAGAGAAAGTCCTCCCAAAAGAACGATGAAGTG 199918 35 100.0 43 ................................... TTTCCTCACTTCTTTTATTCTCCGGCATCGTCTTTTGATTGAA 199996 35 91.4 0 ...............................G.TG | T [200024] ========== ====== ====== ====== =================================== =========================================== ================== 13 35 98.9 39 CTTTTGATATAATCGTACTCGCAGAGTATTGCGAC # Left flank : ATGTCAGGCGGCACATAGAAAAACAGGTCGGATTGCTGAAAGACGTAATGACAGGGAGACTCGAGGAATATGCGCCATATAAACTGCCTTTCTGATGAACACAAGAGAGCTCCCGATCGATCGATAGTTCTATACTCTCATCCGACTGGATGAAGCAAATTTCCTCTTTCGCTCACGACAACTTGGCAACATGCCACCATCTTCTGTTTATTTTTTAACCTGTTTTAAAACATGCCGTTAGAAGAAAAATACCGAGACCTCGTTTTTTCCTGATATGAAAAACAGTCAAAAACACGTGTATTGCATTATATATCAATACGTTAACCGCACCCTTGCAACCAAACGAGCCCTGGACGTTGTTTAACTCATTCATTTTCCGTAAGATAGAAATGAGCATAATCGGTAAAATCAGCTCTTTGTCCCTTGGCATCACTGGTTTTTGCACGAGCCTTGGATTTTGCTCTGTGAGCCCTTGCCAGACAAGGGTTTCCAGAGGTACT # Right flank : GTATTTGTGGTACAAACGTCAGATCAAAACCTGGCAAACAATCACAAATATGACGGCTTGTAACCAGCAAATCACTCTACAGCAAAAAGAAAAAGAGAAGCAATCATGGAGCAATTTTTTGAACAAGGGGTGGGGAATATCTTTGGCTGGGTGGCAGGTATTGTGGCATGCATGGAACTGATTGAATATCTGTTCACAAAAAACCTCCCGTGGATTTCTCGCATGTTTCGCAACGCATTTCGATGGGGGTATCGTGCCCTGTGGCGTACGCATGAGGGCAATGATGAGCGTTTTCTTGCTCTGAATTTTTCAGGTCATCCAGTATTGCCACAACAGGCGCATGATATTCAGAAAAAAATGGGCTGGCCGAACATTGACGTGATCGACGTGCCTGTAGGAACGGTTTCGGAAGATCAGAATTTTCTTCGCACTGCAACCCGCACTGTCGATAGAATTGATCTCCTGCCCAACGAATGGCAATCGTTTGCGCTTGTCGTGAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTGATATAATCGTACTCGCAGAGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 852-438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGIH010000010.1 Prosthecochloris ethylica strain N2 assembly_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 851 37 100.0 38 ..................................... ATGCTGCTGCTGCGGCCGGAGACTTCTTTTTTCTCGAA 776 37 97.3 40 ...........................A......... ATTTTCTCGAGCGAGAACCTTTGCATACAAACCCTGTGCA 699 37 100.0 41 ..................................... ATAAGTTGACCAGTATCGATAATTATCATCTTAATATATTT 621 37 100.0 37 ..................................... GTACCTCGCAAAAGCCTCATTTGGGCTTAACCCCTGC 547 37 91.9 36 ...................T....A........C... GCGAGACCATCATGTACTGCGAAGAGCTTCAACAGA 474 37 78.4 0 ......AC...........T...........G.GTGG | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 94.6 39 GTGTAGGAAGACCCGATTGAGTAAGGGGGATTGAGAC # Left flank : GCAGGGAAAGCTCAGACGGCTGATCGAGGTTACCCGGGACAGCGTCCGGTTCTACCGGTTATGTGAGGACTGCTGTCAGGATATCACAATTATCGGGGATGGAGAGGTGACGCATGATGAGGAGTTTTTTATTGCATGAATGCAGAACGGTGAAATGAGCAAAGGTGTGTAGAGGATGTGGTGGGTTTATGAGACGGGACTTGTGATTAATGAGGATTTAACCTGTTGTTGCAAAGAATGTTATGGCTTTTTTACACGGAGCTTTTTCTGAGACTCGATCAGCAGTGTTCAGAATGATGTAACCTGTTGAAAAATAATGTGTTGCAGGAAAAAGAACGCGAAAAGCTCCGTGCAGTAAGTGTAAGTGAAGAAAATTCAAGAATTTGCAAGCTTGTATGATGAGCGGAAAATGGCGAAATTATGATGGAGATGTTCTTTTTTCAGACATCCGTGAAAAACGCTTCAGAGAGCCTTGTCTGATGCGGGTTTCCGGGGGGAGA # Right flank : GATATTATTAGGGCAAAGTGCTGTGCATGATTCAGAGGGGTTTGAGGTCAGGCGTCAAGCGTCGGGCGGTAGGGGAAAGAGATATTGTGACGATGCAGTGTGATTCTTACTGTCACATTTGAGGAGAGGCTTTTGGCCTCTTTTTTTATTCGGTTTGGCAGTAAACGGCATTATGATCCCTGCACGCCGGTTTTTTGCGAACAGAGTGGCTGCAAATTCAGTCTCGGAAAACGATCGTTTTTTGAGAGTAATTTCCAAATTTTGTGTTTCAAAAAAATCTAAGCAGCAAGTGTTTCCTCCGTTCCGTCGATAAATTTAACGCCGTTAATAACTTTTGGAATCAGCTTGTAACCACGCAATCGCCGCCACCGTTTTTGTGCTCGTTCGGCAAGTTTGAAGACCATTGCCAGTGTGGTTGCCATGGTTCCCTGACCTCGA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTAGGAAGACCCGATTGAGTAAGGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 11374-11041 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGIH010000010.1 Prosthecochloris ethylica strain N2 assembly_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 11373 35 100.0 43 ................................... ATTTAGGATCAAGATTGGTGTATCTTTCATCATGGTCCTGATA 11295 35 100.0 37 ................................... TTTCATGTCTTTAGGGTCATATATCTCCCCCTTTTGC 11223 35 100.0 40 ................................... TATCGAACGCTCTCAGTGAAAAGGTATTTTGTTGCGACGA 11148 34 91.4 38 .............C.A-.................. ATCTCATCGGATTTCTCATTGAGAAACAATAGGGGACA A [11130] 11075 34 74.3 0 ........G....C....-.G........A.GTGG | A [11057] ========== ====== ====== ====== =================================== =========================================== ================== 5 35 93.1 40 GTAGACAGACCCGATTGTGTAAAGGGGATTGCGAC # Left flank : ATGGATAAAGAGACGATCCGATATGCTGAATGACCCGTGGGGGATGGCACCAACAATGACTCTCAAGGGGATGGATTATTTTGCACATCAATTGACTGGAGTCCAGCAGGAGAATGTTTGCGTGCTTTCTTTTGTGTGGGAAGACCCGATTGAGTGAGGGTGACAGGATTGGGCGGCAGGGAAAGGGGTTCAGGATTGTTGGCAAGAGCAACACTCGGAATGAGTGTTGATCAGTGACTGTAGGGCCAAAACCGATGGCTCATTTATTGTCCATGTGACAGGACAGTAAAAAATCATGTAGAGTGTTATAATATCGTAGGTTATCGCCTGCAGTCGTTCCTGCTGAGCCCTGGATGTTGGGTAAATGATGAAAATTCAGTAAGATACAGGTGATCCATAACTGCAAAATCAACCATGAGTCCATTGATAGCGCTGATTTTTGGATGAGCCCTGGATTTTTGTCTGGGAGGCCTTGTCAGGCAAGGCTTTCCGGAGGTAGG # Right flank : ATATTATTAGGGCAAAGTGCTGGGCGTGAATTGGAAGGCTTTGCCGATATGTGATTTTATGGGGCGAGAGGGGCAGATGAGGCCTCTTATCAGTGCAGTCATTCAATCGAGCAACGGTTTAGAACCACCAATCAGACTGCTGGAGGATATGGCGAATAATAAGCCGATGGCTAAAAGGTGGAGGACCCAGTCCCTGAAACGTTCATTGGAGGGGTGGACAGGGGAAAAAAACTTCAAGTGGCAGGCGATATTGTTTGCCTTGTGTTTGATTTTATTTGGAGAATGGTTTCCAGACGGGCTTGAGGGCTTCTTTTATTACCTGCAAGCGGTGAGCATGCACAGGGAATTGGTGCCTTGGGCAATCAACTGGAAGCTCGTTCTTTCGGCATTGTTTATCCTGTTGATATGGTGCATTTTTAAATCCTTGCCCAGGTATACGCAGATCAAGGTACATGCTGGTCAGCCTAAGACGTACAAAGTGCTTGCTGTTTTCCTGAGTC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGACAGACCCGATTGTGTAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 114108-117142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGIH010000007.1 Prosthecochloris ethylica strain N2 assembly_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 114108 30 100.0 36 .............................. GTGATCTCGCCCGTCGTCTTCGAGGAAGCCGAGGTG 114174 30 100.0 37 .............................. CAAGGAAAGCAAAACCTGATTCTATCGCCCCACTCTC 114241 30 100.0 38 .............................. TCGTTATTCCTGCTGGTGATGAGTCGCAGCCGGTTTGC 114309 30 100.0 37 .............................. GCGGAAGAACCGTAAATGCCATCGTTTATCCCCCGGG 114376 30 100.0 35 .............................. AATAGCTACGCGTGGCCTGCCCACGGGACGCAAGC 114441 30 100.0 36 .............................. CATATCACATCCCCCTTTCAAAAATCTCCCGCTCGT 114507 30 100.0 36 .............................. ACGGTCATTTCCAACGCAACGTAGCGGAAATCGTTT 114573 30 100.0 38 .............................. CTATAAAGGCTGTTTTTGTCCAATCCATAAATTGTTAT 114641 30 100.0 38 .............................. TTGCAGCCCGCCTGCCGGCACGAAAACAGCCGCTGGTC 114709 30 100.0 38 .............................. CAGGTCATCCGACCCTCTCGGTGAGCGAGAGCTTCAGG 114777 30 100.0 37 .............................. CAACACCTGCACAAACACATTGATCTATCTGATGTAC 114844 30 100.0 36 .............................. TTCTTGCAGGGAAAGAGACCCTTCAGGGGCTGGCGT 114910 30 100.0 36 .............................. ACATTGCCAAATGGTTTTTTTTGATAAGATTTCTGA 114976 30 100.0 36 .............................. GCTCTCGAAGTTTTTGAACGCCCTCATGGCTTTTTC 115042 30 100.0 38 .............................. ATTTGCTCGATCCTCCAGCCATACTCCGACGTAAAGCG 115110 30 100.0 38 .............................. TTGTAGCTGTCGATAATCATCTTCAGCTCATTGGCCTC 115178 30 100.0 36 .............................. CTCCATGCGCTGGCCCCATATCAGAGTATGAGTGTC 115244 30 100.0 37 .............................. TCTGTAATTTTGTCATGCGGAACAATGTAGCCGTTGC 115311 30 100.0 37 .............................. GTCTTTGTGAAAAATCCGCCCTTTTCGGCGGCAATTC 115378 30 100.0 37 .............................. GACGTTTTTGCGCCTGCAGCTCCACCTCGGATCGCCG 115445 30 100.0 36 .............................. TACATCTCCCCTGACGCAACGTTCCCGGCGGGTTTT 115511 30 100.0 36 .............................. GCAGCATCTCCGTTACGGCAAAATTGACGGACCTTT 115577 30 100.0 37 .............................. ATGTTTGAACTGGTTTTGAACGGGCATACATATCCCC 115644 30 100.0 37 .............................. TCTGACGCAGAATCAAGAAGCGTGTGCGACCGCCGTG 115711 30 100.0 38 .............................. TCGTAGCCGGAGGCTTTTCTGCCTGGCTGTCGTGGGAG 115779 30 100.0 38 .............................. TCAGGCATGGTCGGCTATTCCCGATCAGATGTGGCAAC 115847 30 100.0 38 .............................. TGGGTGCGCCTGTAGATCTTGAAGCACACCCGCAACGG 115915 30 100.0 37 .............................. TCACAATCGCCTTGTTCTGGGCGCGTTTCACCGCCAT 115982 30 100.0 37 .............................. AGATCGAGGGCCGTCATGTGCCGGTCGACCTCATCGC 116049 30 100.0 35 .............................. TCGGACTCGCTGCCAATCTACGGCTTTGCCGATCG 116114 30 100.0 37 .............................. GCGGTACTAACGCAACGATTGCTCAGCTGGAAGCCTG 116181 30 100.0 36 .............................. ATATTCCTGAAGACGACACCCCGATTTGACAACCAT 116247 30 100.0 38 .............................. TCAATTAGCCCTACGCTTTTTGCTCTTCTGGCATGATA 116315 30 96.7 36 .............A................ GTCCGGGGGAGCATGGGAAAACGACAGATATATCGG 116381 30 96.7 36 .............A................ TCACAAAAACCGGGTAAAAAATGCTGCAGACTTCGC 116447 30 100.0 37 .............................. TCAATCACTGTGAGCCGGTCACCATACTCCGCAGCAG 116514 30 100.0 36 .............................. AAAAGGATCAAGATTTCTTCATTCATCGCGTCAGCC 116580 30 100.0 37 .............................. ACGCCGTTGCGGCCGTAAATTCGTACTCCTCGAAAGC 116647 30 100.0 37 .............................. GACGTTGTTGTTGATGCGTCTGATGCTGGCGCAGTTA 116714 30 100.0 36 .............................. ACCTCAAGGAGCGGCAAACTGCAAGGCCGGAAAATC 116780 30 100.0 35 .............................. ACTTTTCATCAACTCAATCTGTCTTATCATGGCTG 116845 30 100.0 36 .............................. ACAGTAATCACCTGACTTACCTCCATTCTCATTTCT 116911 30 100.0 37 .............................. TGAAGAAAAAGGGTTGACATCGAGGTATAGATCAGTG 116978 30 100.0 38 .............................. GGCTTTCTCTGCATACTCCCGCTCCTTGGCAAGTGAAT 117046 30 100.0 37 .............................. ATCGTCCCGTGAGCCATCGCAAAGCTCTTGCGCTTAC 117113 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 46 30 99.9 37 CTTGTAATTGCACCAATGTGGAATTGAAAT # Left flank : ATCGGATAAGATGGAAGAAGCCCATCTCTGGCAGCTTAAATATTATCTGTATTATCTTAAAATATCAGGAATGGTGGATGTTACAGGAAGGCTTGACTACCCGAAGCTCAAGAAAACTCTTCAGGTTGAATTAACAAAAGATGACGAGCAGAAAATCCAGGGGGTTTTCGATGATATGACGGTCATTGTACATCAGGAAGCCCCTCCAGAGCGGATCAACAAAAAGTTCTGTAAATCATGTGCATATTATGAATTTTGCTGGGCTTAGCCTGTCTATGTATTGAAAAAGATGTCGTCGGGCAGCCGAGATAAACCTGTTAGAGAGCGGAAAACCTGCCGAAAAAACCAGCTTTGTTTTACTATCTGCAATGAAAGTAATAAATTAAAAATGTCGTCGGAGTCCCGGTTTTTTTCGGTTATCACAACGTGACGACAAATTTCAGCGATTTTAGTGATCAGACATCAATAAAATCGCCCTTCTTCAGCCGTTTACCTCACGG # Right flank : TATGAGGTCAGCGTTGATCCTGGTGGATTGAAACTGTGGGGATCGAGCAAAGCTTAGAGCAGAAGATGGTCGTGCCCTACGTGTGAGTGGATTGTCATCAACTTGTTGGTTCTTCTCGCGCCTTTGTGTTTCATTACTTTTTCGGTTGATCGGCATAGTTTTCAACCCTCCCATTGGGTGATTTTCTATTTCTGCTTACTATTGCATATGTTCCTGTTCCTTGATCCTGAGGCAGGATCAAGCTGATCACGGTCGGTGGGAGGACGTTCTGTACAGCAGGTTTTGATATTTCTCTATGGCACTTGATTATATGACACTCGATGTGCTTCGCCTGAGCCATCCGGCTTGGCGGTTGTTGCGGGCGCAGCATGCTCCGTTTATTGCGGGGTTTTTGCATCGGGTGTTTATTGTGCCGAACGTGCGGGTTCTGCCTCAGGCGGACCTGGAGGAGATGCTGGAGGACGAGCTGTTTGCGTTGCGTGAGCAGTTGGGGGATGAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTAATTGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //