Array 1 161519-159551 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVK01000001.1 Salmonella enterica strain BCW_2907 NODE_1_length_617687_cov_2.56037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 161518 29 100.0 32 ............................. GGGCCGTCAATAAGTATATTCGAAGTCATGCT 161457 29 100.0 32 ............................. TTGCAGGCTAAATCGAGGGATGGCCGGGGAAA 161396 29 100.0 32 ............................. GCGTCATTCGGTGCTGATATGCAGATGATGAA 161335 29 96.6 32 ............................T GACGGCTCGCTGATTTGGGATGACTGGATCGA 161274 29 100.0 32 ............................. TTGTCCATGCTATCGGCAATTTTCATCAGGCC 161213 29 100.0 32 ............................. TTCTGGAATAGACAGCTTGATTGAAGGCGTGA 161152 29 100.0 32 ............................. CGCGCCAATCCGGTGGTGTCCAACACAACGAA 161091 29 100.0 32 ............................. AGCCTGCTCCCGCCGCCTGATTTTGTGGAAAC 161030 29 100.0 32 ............................. GATTGCTCATGCCGCACCGCCTTCAACGCGTT 160969 29 100.0 32 ............................. GACAACCGAACACTTTTGAACGCGCCTTTAGT 160908 29 100.0 32 ............................. CAGCATTACCAGACAACCCTTTTTTATCAGGG 160847 29 100.0 32 ............................. CGTGCAGCTCTTGGCTGTAAAACAAAATATTC 160786 29 100.0 32 ............................. CCCGCTTTATCAATACTTTCGGGCTGCGATAT 160725 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 160664 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 160603 29 100.0 32 ............................. TTCCAGACCAGCGACGCATCGCTGGCGAGCAG 160542 29 100.0 32 ............................. GCTATCTCGTCGGACGGTTTAAAATTCTCGCC 160481 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 160420 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 160359 29 100.0 39 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATCAACGTCA 160291 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 160230 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 160169 29 96.6 32 .............T............... ACCTATATGCGCGCCACGGGTAAGACCTGGGA 160108 29 96.6 32 .............T............... CCGCGCTGACCGCAGAGGTTGCGCAGCAGTTA 160047 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 159986 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 159925 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 159864 29 100.0 11 ............................. CGGCCAGCCAT Deletion [159825] 159824 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 159763 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 159702 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 159641 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 159580 29 93.1 0 A...........T................ | A [159553] ========== ====== ====== ====== ============================= ======================================= ================== 33 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGACGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 177991-176804 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVK01000001.1 Salmonella enterica strain BCW_2907 NODE_1_length_617687_cov_2.56037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 177990 29 100.0 32 ............................. AAAAATGCCCGAATATTGAGCGCAGATTTAAG 177929 29 100.0 32 ............................. CTAATCACGCTCCCGGACATTGATCCTGAACC 177868 29 100.0 32 ............................. TCCATCAATCACACGCTGGCGATCTTTCACTA 177807 29 100.0 32 ............................. AATATTATCTGGCTTAAAAACAGCACTATTGA 177746 29 100.0 32 ............................. GCTATTTCCGGCGAGCCACTAACAGAGGAGCA 177685 29 100.0 32 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTG 177624 29 100.0 32 ............................. CGTTTGCGCTGCAATGCGCAGTCGACGCCGGG 177563 29 100.0 32 ............................. TTTCAGTTCATCAATTTCCGGGAACGCGGCGC 177502 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 177441 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 177380 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 177319 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 177258 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 177197 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 177136 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 177075 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 177014 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 176953 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 176892 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 176831 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //