Array 1 145296-144210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNDB010000013.1 Enterocloster bolteae strain D31t1_170403_B11 NODE_13_length_167006_cov_36.3314, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 145295 33 100.0 35 ................................. ACTATCTGTCCAATCAAGCAGACACCGGTCATCCA 145227 33 100.0 33 ................................. CCCTCATAGCTCCCATTGAATAAGGGTCACATT 145161 33 100.0 34 ................................. CTTGAAATGCTCCAGCGCACGTCCTGCCAGGTCA 145094 33 100.0 34 ................................. TTGTTCAATTTGATATCTACAGCTGCACGATAGA 145027 33 100.0 35 ................................. GGTGATATTTCCATTGAGGCCCTGACATACGCTGT 144959 33 100.0 33 ................................. CGCTGTATCAGTTAGAAGGCAGGCGTACACTGG 144893 33 100.0 36 ................................. CTTTTTAGGGAAAGTGAGAGGCAAAGGCGCTATATA 144824 33 100.0 35 ................................. AACAAAACTTGCACTGCAGGCAATGGTGGACCGTG 144756 33 100.0 34 ................................. AGCGCAGAGGCCGGAAAATCGTGAATGTGGAGTC 144689 33 100.0 35 ................................. TTCCAATATCTCATTACTTGCTGCCTCGGCCCCCG 144621 33 100.0 34 ................................. CCTATATTATCTGATGTATCAGGGGATAACAGTA 144554 33 100.0 33 ................................. TTACCGGATGTCTGGATTCTGGTAAACCGGTAT 144488 33 100.0 34 ................................. GTCAATGCCGGAACCAATAGGAACCCCGTCACCT 144421 33 100.0 35 ................................. CGTCACATCGTACGTCTGGCAGAATGCGCCTACCA 144353 33 100.0 36 ................................. CCGTGGAGGGCGGCCGTATAAGTCTGAGCCCAGTCA 144284 33 84.8 9 .........................C..TTCC. TTCCGGTCA Deletion [144243] 144242 32 75.8 0 ............A.A.-..A..CAA.C...... | G [144213] ========== ====== ====== ====== ================================= ==================================== ================== 17 33 97.7 33 GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Left flank : TGCTGATACTGATTACATATGATGTGAATACGGAAACCACTGCAGGCAGGACCAGGCTGAGAAAGGTTGCAAAGCAATGCGTTAATTACGGCACCCGCGTCCAGAATTCTGTATTTGAATGTATTTTGGATAATACCCAGATGATAAAGCTAAAAGCCATACTGACAGATATCATTGATGAGCAGACTGACAGCCTTAGATTTTACAACCTGGGAAATAAACACACTACAAAGGTGGACCATGTTGGGGTGAGTAAAGGGATTAAAGTGGAAGAGCCGCTGATATTCTGACCTGGCTGCGGGCGGTAAGGAGGTTTCAAATAGTTTGGTGCGAACCAGAAGCAAACATGAATTTACGGGGGGATTCGCACCGGAAAAACTGCACAGTGAGAACGGTTTTGGATGTGTGCAGGGCAGGTTGGCGGTGATTTGAGGGAGTATGATGTGATTTGATTGTGGAAATGTGATGAAGAATTGTTGGTTTTTTTGTGTAGTATTGCT # Right flank : CCGCCAAATTCAGGATTACGTTTAGTCAAAACATCATTCCCCTTTTTCTAAGAAAACAGTATAGTTTGAATCATAAACATTAGCTATAACTAACAACACGCAACAAGAAAGGTGGGCGAACACCCACCTTTGCCATAAAACTGTTATAGGGTATAAAGAACGCGGGCCTCCCTCACCCTTTCCATGCCCGAATCTCTCTAAGCCCCGGCACCAGCACTTTGGCGCTGGTTTCCAGAATAATCCGTCCTTTTTCAGCCGTGGCGCCTGACGGGTCTCCGCCGATTCCTATGGGTTTGCCGTCTGCTGTTTTCCAGTCCTCGGACACCCAGCCAATGGATACGTTTCCATAAGGCCTCAGTGCCTGATTGTCTTTAAATGCAATTGGAATTCCTGCCTCTGAGGTATCTAACTTTACCAGGGACGGGTCCACGGCCATGACCATGGAGGTTTCCATCTCGCCTCCATGGAAGTCCCAGATATTTCCCTCTGAAATGGTGGCC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 283748-283959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNDB010000003.1 Enterocloster bolteae strain D31t1_170403_B11 NODE_3_length_337677_cov_29.806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================ ================== 283748 32 100.0 26 ................................ GGTCTAAGTAATACCACTGTCCGCCC 283806 32 96.9 28 ...............................C CGTCCAGATAATACCATCTGCCATTAAT CT [283811] 283868 32 84.4 28 G....................CT.A......C CGTTCATATAATACCATTTGCCGTTGAT 283928 32 81.2 0 ................AT....ATA...T... | ========== ====== ====== ====== ================================ ============================ ================== 4 32 90.6 28 AGCCTGCCAGCCGGTCTGCATGGCGCCGCTGG # Left flank : CGGACAAGCGCTTTCCCAAGGCCAGACGCGTCCCGCGCACCTTGATGATAACGCTTCCGCTGCCTTTCTTATTCAATATATTTACAGGCGTCCCCTCATTGACCCCCAGGGCCTCAAGACGTCTGGTAATGCTCTCATCCACCTGCACGCCCGATACAACATACCGGCCGCCGATCTCACACTCATTCAGCTTTTTCTGCATTGATGCCTGTCTCCTTTTGTAGTTACATTTAAACCATATTCATTGTATGCTTAATGCGAAAAAATGTCAATAAAAAGAGTTTGTTATGACAAACTCAATTCAAAAAAAGATACAGCGAATCTCTCCGCTGCATCTTTTCCTGCTTTTTCTCTATATTTCTTTATGTTTCCGTTCTGTATATTCGTATTAAGATTTACTGCACCCAGGCTCCTGAACCATCCACATATTTTCCGTCCGGCGTCCATGTATTATAATACATGGCTCCATTGGTGCCCAGATAGTAATACTTGCCATTAAT # Right flank : GAAGGGTTCAGATAGTACCAGGTCCCATCCAGCTTCTGCCAGCCGGTAACAATATACCCCTTGTTATTGAAATAATACCATGCGCCGTTAATCTGTTTCCAACAGGAGGCCGGATATCCGCCGGTATCATACGCATACCATACACCAGTACCATCCTGCTCCCAATGTCCGCTTCCGCCATAGCGGCCAAGCTCATCCTCATCAATATACAGGGAGTTGGAATCCTCGGACCATTCACCTGTCTTATTATTGTAACGGGAAATAGCCCTTACACGGAAGGTATAGTCTCCCTCCCGGTTAAAATAACCTGCAAAATTATATGAGGTTCCTGTAGTGCTGACCGTAGTGACTGTCTTGTCGTCGCGGAGCAGCTTTACATCATAGCTCTTAGCGCCTTCAATCTCCTCCCACTCAGCCGTGGTATCATTCCATTCCAGCTCCGACGCACCCTGAAGCTTGCCGCCGATACGTTTTAACTCAGCATACACTTCAATGTACTG # Questionable array : NO Score: 3.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:-0.09, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTGCCAGCCGGTCTGCATGGCGCCGCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62634-61194 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNDB010000014.1 Enterocloster bolteae strain D31t1_170403_B11 NODE_14_length_160529_cov_33.6387, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 62633 33 100.0 35 ................................. ATAAAGCTGTGCCTGGGCGTTCTTTTCGGCCTCTG 62565 33 100.0 33 ................................. CTATATCCCTGCTTTATTTTGGGCGGCTCCGTC 62499 33 100.0 33 ................................. TCCCCGAACCGGATTACCTGGCTGTTAATCCCG 62433 33 100.0 35 ................................. ACTAAAGGAAATATGTTTAAGGTTGGGTACCATAT 62365 33 100.0 33 ................................. AAATACTCCACTGTGCGGTCCACATCCACGGAA 62299 33 100.0 32 ................................. TCAGTCCGGCACCCGGTTCATATGGCTGCAAA 62234 33 100.0 34 ................................. TCCGTTATTAGGTTATTTGTAGGTGTGTAACCGT 62167 33 100.0 33 ................................. ATTTGTAAGATAATCAACCAAATTTTGCGCAGA 62101 33 100.0 35 ................................. ACCGATAGCAGAGCCAGCCACATCAATATGTATAC 62033 33 100.0 33 ................................. AACGGTCTGTGTGCCAGCAGTTACAAAATCTGC 61967 33 100.0 33 ................................. ATCAGATGCTGCTTATCATTTTAAATCCATCAA 61901 33 100.0 36 ................................. GTCAATGTAATTTATCAATCCTGCTTCCCGCATATC 61832 33 100.0 33 ................................. CATGTTGATTATCAGATTATGAATCAACTGTAT 61766 33 100.0 35 ................................. GCCTATAGCAGAGCCAGCCACGTCCACATGAATAC 61698 33 100.0 33 ................................. ACGAAAACCACAATCATCACAACCGTGAATATA 61632 33 100.0 33 ................................. GTAAGGCCCGTGCTCTATGAGAAAATCAAAGAG 61566 33 100.0 35 ................................. ACCTTCCACCTGCGCATCCTTAAAAGCTGAATGCA 61498 33 100.0 36 ................................. GTAATGTCCTCCCCTAAAAGGGGTAACTGAATCAGC 61429 33 100.0 36 ................................. AACATAAGCATTTACGGCTGCGAGTATGTCTGCCCC 61360 33 100.0 34 ................................. CTATATGTCACGTTATCTCACCTCCGCTCATAGT 61293 33 100.0 34 ................................. GATATATAGTATAACAGACTAAAATGTATAAATC 61226 33 81.8 0 ......................CA..CCA...G | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.2 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : AAGTTCTGGAACTACCTGAAAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAGGCGGGAAAGCTGGCTGCTGTAATGGAACGTCAGGGCAGAGTACTGCGTATTTGCGATGCCGAAGATATGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGAGCCATATATCCGGAACAAAAGAGGCTTGTATTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCTTTGCAGCATGCAGGATATATGCGGGAAATGAAGGATTATGTAATATATAAGTAGAGTTGGTTTCTGTGAGTTGGGAGCCCTTCAAACCAGGTGCGAATGCCAAGCTGACATGAAATGCCAGGGAGATTCGCACCTGAAAAACAGAGGAAAAGGCCGTGAAAGCGGGCTGGGTGAATGGACTGAATTGGTTGAACTGGGGAGAGAAGAGCATAATGCATAAAATGTTAGGGGGGATGTGGAGTAGGTTTGGATAATTTTGCT # Right flank : ATACCTGTAAGCCCCTAAATTAATGCAAAAGGAAAATTGCTCCCCGCGTACCTAATGCATTGAAAGCAGCCATAATTATATATTGAGAATTCGCAAAACATCAGTTAAAAGAACATATTAACAGTATCCCGATCAACAGGGAATCCGTTAAGCGCATACCCCCCTCCGTAAAAAACATCCGCCCCAAAAAACACCAACATAAACAAAGGAGTAACACATATATGATTGAAATAATCTATAGAGACAAACGCTTTCTTGTTAAGGGCAGCTTTTCCATAGGAATAGCAGGAAACTATGTAAATGAGGATTTTGGGGATGAGAATATCATGATTAACGATACGTTAGAGGAAATCATGAAAGAATTGCAGGATGAGGACTCCTTTTGGTACAAGCCGCTGTTTCCCTATCTTAAATCTGAGACAGCAGACAGTGGCGGAATAGCCAGAGGTCTTACTGCGTACTACAATCAAAAGGAAAAGGAAATCAGGGAGAATGAAAAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //