Array 1 546310-547988 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025200.1 Lactobacillus acidophilus strain YT1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 546310 28 100.0 33 ............................ TGATGATGATAGTAATTTATCTGGACTAGTTAA 546371 28 100.0 33 ............................ TGATTTTGCTGCAGGAATCGGCTTTGGCGGTGC 546432 28 100.0 33 ............................ CAAATTTGTCAACGACTACCACAAATGTGAGAC 546493 28 100.0 34 ............................ TAAGGAGGTTTAAACCATGAAACCTAGTGAAAGA 546555 28 100.0 34 ............................ CTATTCCACCAATCTAAATCAAATGAATCCCAGC 546617 28 100.0 33 ............................ CACTGTTCAAGGTGTCGCACCTGACAGTTCAGG 546678 28 100.0 33 ............................ CGTAATCACAATCGCAAATCCTAAGGAAGATTT 546739 28 100.0 33 ............................ TACACCGCAAAGAAGTACTTGAACAAGCAAACG 546800 28 100.0 34 ............................ CCATTGGTCTGCTGATGTAGCTTTAGTTGCTATA 546862 28 100.0 33 ............................ TCATCTATTTCACTTTCCTGTTGCTCAGATTTT 546923 28 100.0 33 ............................ TGGGGAAAGATAGTATCAAATAGCCTTCAATTA 546984 28 96.4 33 ...........................A AATGTGCTTTACAAAGTACAAAAAAGTGATATA 547045 28 100.0 33 ............................ TGCTGCTACGAGCGCTTTTGGTCACATTAAAGA 547106 28 100.0 33 ............................ TGACTGCAATGCAAGCAAGAGCGGACATAGCAA 547167 28 100.0 33 ............................ CGTCATAAATTAGCTTTCTGCCCTTTTGCGTCC 547228 28 100.0 33 ............................ TGCTGCTACGAGCGCTTTTGGTCACATTAAAGA 547289 28 100.0 33 ............................ TAAACAACTAAAGTATCTGGATCATTTTCTGCT 547350 28 100.0 33 ............................ TCATTGATGCACCGGTACTTAACTCAAATCAAA 547411 28 100.0 33 ............................ TGACTACGATATTTTCTTTTAATTATATCTTGG 547472 28 100.0 33 ............................ TGGGGAAAGATAGTATCAAATAGCCTTCAATTA 547533 28 96.4 33 ...........................A AATGTGCTTTACAAAGTACAAAAAAGTGATATA 547594 28 100.0 33 ............................ TACATTATTGTTCAATATTGACATTACAAGCTT 547655 28 100.0 33 ............................ TGGGGAAAGATAGTATCAAATAGCCTTCAATTA 547716 28 96.4 33 ...........................A AATGTGCTTTACAAAGTACAAAAAAGTGATATA 547777 28 100.0 33 ............................ TACATTATTGTTCAATATTGACATTACAAGCTT 547838 28 100.0 33 ............................ TCACCAATGCCTGAAAGGAAACTACCTACACCA 547899 28 100.0 33 ............................ TGGTAGGGGTAATGTGGAACAAGTTAAACCTTT 547960 28 100.0 0 ............................ | A [547986] ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.6 33 GTTTTCTCCACGTATGTGGAGGTGATCC # Left flank : GCGTGGTTGTCTGCAGCAAAGGCTATCCAACGCACCCAGCACCTAATGTTAAGATCGGCAAGCTGCCTGAAGGTGCTAATACCTATATCGATTACGCCAATGTTAAAGGTGATTTGGAAAACTTGACGGGTGATGGTGGCCGCTTGTTCATGGTGATTTCGGAAGCTGACAATTTAGTTCAGGCACAAGACAATGTTTATTCTTATTTAAGTAAGCTTGATCTGCTGGATTGCTTCTACCGGCATGATATTGGTAATCGTGCTTTGGGAGATTTTAATATTATATAATGTCTTAACTTAATGACATTGATAAGGCTACCCATATTTTGTTTATTTGTAATCCTGTGAATATAATAGCAATTTAAAATTATTATATGAGCTAGATATATGTAGAAGAATATTTGATATAATTGTGTCGATGATTTGGTTGGGGAAATGCAAACTAAAGAAATTTTGCTTTTTAGTAAATTTAAAATAGCTTAACGATGGGATTCCTTTAGT # Right flank : CAATCCTCTCCCGACGCTTTTCATGGTGTGGGGTATTTTTTAGTCAGACTTTAATTTTACAAATAATTATTAACGTAGTAATACCATAGACTTAAATCAAGTTGAAAGAGGATGATTCAAATAATTAAATTATCAAATGATGTCTTATCACTTTGGGGTAAGAAAAATAATGATGATGATCAAAAATTATGGTTACCGCTAGTTACACATTTAGTTGACACTAGACACGTAATAAATTTTCTTTTTAATAATTGGCTAAGTAATGGTCAAAAAAAGATTCTATATGAAACTCTATCTGAAGAAGAGGCATTACGTTTAGTACGATTTTTGGGTCAATTTCATGATATTGCTAAAGCTATACCAGCTTTTCAAAAAGAAAAATCTTTCAATAGAAATGAAGATCTGGATAATGAAATCTTAGAAAAGCTCTTAAGAAATGGTTTTGAACAAATTGATGAGACAAATTTACCGTCACCACATGCTAGTCATCATACTATTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 557572-558393 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025200.1 Lactobacillus acidophilus strain YT1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 557572 28 100.0 33 ............................ TCATATTTTTGTTATTTCTTGTTTCAAGTCGAC 557633 28 100.0 33 ............................ CATTGATAGAGTTCCTCGTCCTACGCCTAAAAA 557694 28 100.0 33 ............................ CAAGTCAATATATTCACCAGAAAGCGTTGTTCC 557755 28 100.0 33 ............................ CACAGTTTTGCCGAGGCTGGTAAGGCACTAGGC 557816 28 100.0 33 ............................ TGGATTGCCAGGATAATTAGGATTAGTTGAAGT 557877 28 100.0 33 ............................ TTTGAAAAGTTTTCCACCGCCCTTTTTGGTGTC 557938 28 100.0 33 ............................ TTTGAAAAGTTTTCCACCGCCCTTTTTGGTGTC 557999 28 100.0 33 ............................ TATTGATGCAACACCTAGCGCAAGTCAACCTGG 558060 28 100.0 33 ............................ CAGGGTGGTTTTAAGTACGAGATTGACTACGAT 558121 28 100.0 33 ............................ TGGCGAGAAGCTTATGAAGATCCTAGGAAAAGG 558182 28 100.0 33 ............................ TATATGCGACTTATTTCTTACGATGAGATTCCA 558243 28 92.9 33 ............A.A............. TCGATGGTAACTCTGTAGCTTTTAGAGCCTTTT 558304 28 75.0 33 .....T..T.T.A.A........A.C.. TGAAGCACAATATTTTTAAAATAATTGGGCAAG 558365 28 75.0 0 ...........AA.A......C.C..TA | A [558388] ========== ====== ====== ====== ============================ ================================= ================== 14 28 95.9 33 ATTTTCTCCACGTATGTGGAGGTGATCC # Left flank : AACGTGAAAATTTCTATCGATTGATAAAATGTAAATCGAAGATACCTAAAGAAGTTGTAAATTTGACAGGCATAAGTGATGCTCAGATTGTTAAAGATGGTGTAGAGATTGCAACAGCTTTAAAGGATCTGAAAAAATTTATCGATAAATCGTTGATCATTGGATACAATGTTTCATTTGATATTGATTTTTTGAACCAAGCATTAGATGAATGTGGCGAAGAACAACTTTCTAATTCAATTAAAGACGTAATGCCTGTTGCTAAGAAAGCAAATATGTTTCTTGATGATTACAGACTAGAAACGGTTTTGAATAGTTTTAAAATAAATAATGAACATCCGCATAATGCTTTAAGTGATGCTACTGCGACTTTGAATTTGGCAAAGAAATTATTATAGTATAAAAGTAAGTTTCTTTTGTTGGGATAGTTACTAAATAAAAGTGATTAAAAATCAGGTATTTTTGTTTGGCAAATGGCTCTATATTAAGGATCTTTTAGT # Right flank : AACGCAGTGAAGGAAAGATCACAAGAAAAAGTCCCTAATCAGGGCTTTTTTCTTTTCCAAAAACAACATGCTGAAATAGTGTACCGTAAACTGGTAAAATAGATAAGTAAACATAGATCAATTAATAAATAAGGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATAGATGGAAATTCAGTTGCTTTTCGTGCCTTTTATGCTTTGTATCGGCAACTTGATCGCTTTACTAGTCCAGATGGGTTGCACACTAATGCGATTTTTACCTTTAAAAACATGTTGGATGCCATTCTTAAACAAGTAGATCCAACTAATATCTTAGTTGCTTTTGATGCGGGCAAAGTTACTTTCAGAACTGCCATGTATAAAGACTACAAGGGCGGCAGACAGAAGACACCTAGTGAATTGCTTGAACAAATGCCTGTTATTCGTGAAATGTTAACGGATTTAGGGATTACAAGCTATGAACTGAAGAATTATGAAGCCGACGATATTATT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //