Array 1 994841-995540 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039500.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000211 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 994841 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 994902 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 994963 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 995024 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 995086 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 995147 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 995208 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 995269 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 995330 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 995391 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 995452 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 995513 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1011663-1013157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039500.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000211 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1011663 29 100.0 32 ............................. GCGGATCTGTTTTGAGGTGTTCTTCAACTGTG 1011724 29 100.0 32 ............................. ACAATGTGTGCTCGTCCCATACGCGTTTGCTG 1011785 29 100.0 32 ............................. ACTATTCGGTCAAAACAGCCTCCATTCTCAGC 1011846 29 100.0 32 ............................. CCAGCGCAAGCGGGAAACAATCATCGGGCAAG 1011907 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 1011968 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 1012029 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 1012090 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 1012151 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 1012212 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 1012273 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 1012334 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 1012395 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 1012456 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 1012517 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 1012578 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 1012639 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 1012700 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 1012761 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 1012822 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 1012884 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 1012945 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1013006 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1013067 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 1013128 29 96.6 0 ............T................ | A [1013155] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //