Array 1 5416-6968 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXA01000007.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4494 NODE_7_length_240536_cov_62.935822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5416 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 5477 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 5538 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 5599 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 5660 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 5721 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 5782 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 5843 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 5904 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 5965 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 6026 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 6087 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 6148 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 6209 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 6270 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 6331 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 6392 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 6453 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 6514 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 6575 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 6636 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 6697 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 6758 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 6819 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 6880 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 6941 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23283-23800 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXA01000007.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4494 NODE_7_length_240536_cov_62.935822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23283 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 23344 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 23405 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 23466 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 23527 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 23588 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 23649 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 23710 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 23771 29 93.1 0 ............TC............... | A [23798] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //