Array 1 6487-5898 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUBZ01000021.1 Cylindrospermopsis raciborskii ITEP-A1 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================================= ================== 6486 30 100.0 41 .............................. TGTGTTTTCTCAGGGTCTAACCCTTTGTGCAAGGAAATACT 6415 30 100.0 42 .............................. TGTGTTAGTAATAGATGTATGGTTATCATTAGAACAAAAATC 6343 30 100.0 46 .............................. GGAAAAGTGATTTTGCAAACTGGCTTCTCCAAGAAAAAATGAAGGA 6267 30 100.0 42 .............................. GGAAACATTTTATTAAATAACAACTCCAACTGTTTGTTGGAT 6195 30 96.7 237 .............................A AGTTTGCATAGATTATGAAGGAGTTTAAATGGTTTATATTGATGACGATGATAATATTGATGCCGATTTGGAGGAAGGAGACTTAGACTATTTTTGGCTAAACTCCCTCAGCGACAGTTATCAAAGATACCAAGAAGAACTAGAAGATGCTGAAATGGAAATAGCTTATGAGGAAGAGGAGCTTGGATGATGAATGGGAAAAAATGGCTAATTAAGTGCGGAATTAAGTATTGACAA 5928 30 90.0 0 .....G....................T..A | C [5903] ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================================= ================== 6 30 97.8 82 GTTCCCACTCGCTGGGGACATTAATTGAAT # Left flank : GATCGCACTTTATATGGAGGCAGAAAAGCTGCGATAAACCTTGATATATCACGTATTAATCAGCAAAAAGAAATAGTGAAGACTAGTCTATGAGAGAATGGCGGGTGCGTGTGTAGTGCGATATCACATAGTGAGTGCTTCGCAAACACACTAAAAAAGGGGACTGTGTTTTTTATTACTTTTATAAAGTTTTGTTAGAAAAATGGAGGGAGTATAGTTATAACAAGATATTTGGGATAAAATTTTGAAAAATATTGTAGTGAATGTAATAATAGGAATAGAAATAAATATGACAATAAAACCAGTGAATCACGAAAAAAAACCGAAGGTCAAGGAAAATGGCTGGAAAGCTAGTAAAATCGTCGGGAACCTCGGTGCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAGACAGGGTAAGGGGTTAAAATGGAGGA # Right flank : TTAGAATTCTTCACAGTCATCGCTGTCGTCTTCAGGATAGTAGCTGTAAAACTTCCTCATAAAACTACAGTACAAACTTTTTACCTCATCTGCATTACCGCTTATTTTGTCTGGCAGCCAGTCGCTGTTGTAAGCATTAACAAACTTGATCAAGTTATCTACAGTTGGGTGGAACTGTGGTAAGTCCTTGATTATAGATTCTATTATTTCCAGTTTGTTAAGTTGGTCACAGTTAATTTCTAACTCATTAAAGAAATACTTTAGAGACTCTTTGTTGTTAAACAATTCTTTGTGATACTCAACGTCAAAGTTCTCAACCCTTATAATTTCTCCAAGGTTTTCATTTAGCTTACCGCTGTTAACTATCAAACTTACAGGTGGAGTTGGAAAATACCCGAGGCTCTGTTCTCTTACAAAGTTGTTAATGTTATTAACAATGTAAGAATAACAAGGGTGGTAACTTCCACTAGGAAAAGAACGGTTCTCATCGATGACGTAAC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 18505-15484 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUBZ01000031.1 Cylindrospermopsis raciborskii ITEP-A1 contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================== ================== 18504 36 100.0 47 .................................... ATCAGCCTCATATCAACCCATTTTCCAATGGGCAAATAGTTATCCAC 18421 36 100.0 35 .................................... TGTACTGTCACTGTCCGTCGACATTTAAATCACCT 18350 36 100.0 37 .................................... ATTCTAAGAATCCAGAATGCACTTTAGCATTACCTGG 18277 36 100.0 39 .................................... GCCATTCAGTTTTTGCAATACTGTCCGCTTCATACATAC 18202 36 100.0 43 .................................... CTAACATAAGGAAAAATAATTTTACCCTAATTTCAAGTGAGAA 18123 36 100.0 39 .................................... TAGAGAGCTTAGTTTCTAAAACTGGCCTTCCCTTAGGGG 18048 36 100.0 35 .................................... TCGTCGCCGAACCCGAATCCCTCAGGGTCATCGGG 17977 36 100.0 38 .................................... GCTAAGGTAAGCCCAGAGAGCTTACCCCATTTTGTTTT 17903 36 100.0 38 .................................... GAAAGCATCTGCTACTACGTTACCTTTTTTCTGTAATT 17829 36 100.0 41 .................................... CTACTATAGTGGATCTTCCACTATAGTAGATGTAGTATCTA 17752 36 100.0 32 .................................... AAAAAATCTTTTATACTCAATATTAGTCGGAC 17684 36 100.0 40 .................................... ATGAGAATACCGTGTTCTCCTCAACTGGTGGGGAAAAGGG 17608 36 100.0 38 .................................... ATATATGGCTCTCTAATTGGCAAATATTGCTTATAAGA 17534 36 100.0 41 .................................... AACAACTGCTACTTTTCGTAGCTTTTCTAGCTTATTCATGT 17457 36 100.0 35 .................................... GAAATAATCAGCCATAAAGCTTTGTCTAGCAGGGT 17386 36 100.0 39 .................................... CTTGTTCTCTAGATGAACCTTCTACTAGGGCAAATTCTT 17311 36 100.0 38 .................................... TAACAATTAATGACTACCACGCGCTGGCATCAGCTAAC 17237 36 100.0 35 .................................... TAAAGCATCATTATGTTTTTGTTTTTCATACCTAA 17166 36 100.0 39 .................................... ATGGCGTGAAAGGTGAACAAATCTATATTCATAAATACC 17091 36 100.0 39 .................................... AAGAATTCTTTGCTGCAGCCTTCTTCTCTGTAGCCAGCT 17016 36 100.0 32 .................................... TTTGAATTATTCACAGATCGCCGCAACAAGCG 16948 36 100.0 36 .................................... TATATGAGGTCGCGCGCGCGTGGAAAAATTTTTTTG 16876 36 100.0 38 .................................... CAAAAATAAAGGTGTAGGCAAAATCCAGACACCCGGAG 16802 36 100.0 37 .................................... AACTCTTTATATCTCGGTGGAATAGTTTTCATATGTA 16729 36 100.0 45 .................................... AAAAATTCGTATATCCACTTTTGGATATACCCTAAGATTTCTGGC 16648 36 100.0 39 .................................... GTCATAGTTTTGCTTATATCATTTACCATTCTTTGAGTT 16573 36 100.0 38 .................................... AATTAAAATAGCAAAGCTTTTTACAGCTTTGCTATAAT 16499 36 100.0 53 .................................... CTTAACTAGCAAGAAAGATTAATTATAAATATAGCCCCGCGCGGGGCTATATT 16410 36 100.0 37 .................................... ACCACAACTGCTTGGCTTGGTCTTCCGTTATAAACTG 16337 36 100.0 40 .................................... CCATAATGGCTCGGCTGACCGGACTGGACTCTTTTAGCTT 16261 36 100.0 41 .................................... CAAACTAGAAGTGCAATGCATGGGCATGATGATTGCATTAT 16184 36 100.0 37 .................................... GAGTTTCTGGGAGACTGTCAGCTATTGACTCTTTTAG 16111 36 100.0 38 .................................... AATTAAAATAGCAAAGCTTTTTACAGCTTTGCTATAAT 16037 36 100.0 36 .................................... TATAGAGCCAGAACCTTTGCTATCAATAGAGTGAAA 15965 36 100.0 39 .................................... CAAGGAAATACTGGCTAGGGCAATCAGCTGTGCCAGCTC 15890 36 100.0 35 .................................... TTAGTTGCGCTCTTAGTTGCGTTCATTGATTTAAT 15819 36 100.0 40 .................................... AATATAGAACAACACTCACTACTGGAAGACACTAACAACA 15743 36 100.0 41 .................................... GGGACAATATCCTCAATTGAGGGTAGAAGTAACTAACTAGA 15666 36 100.0 36 .................................... AAAGACAAATCATAGTACTATAGCACTTTCTGTTGT 15594 36 100.0 39 .................................... AGTTTAAAGACGTAGTCTTTAAGTATGCTGGATGTACTT 15519 36 91.7 0 ..............................CA...A | ========== ====== ====== ====== ==================================== ===================================================== ================== 41 36 99.8 39 GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TGAAAATGTGTAGAGGTGCGATCGCCCGTAGCGAGTGGTTCCCCAATAAACTTCCCTGCATCTTCTCAAAGGAAAATTTGAGGGCGGTTAAAAAGGCGATCGCACGTAGGGAGTGATTCGTAAACGTGCTGGGAGTGATTCACAAACAGACCAAAAATCGTGACTGTGTTTTTTATGACCTTTATAATTTATTATTGGAAAAATGGAGAAAGTATAGTTATAACAAGATATTTGGGATAAAATATTGAAAATTCTTATAATTAATGTAATAATAGGGAGGGAAATAAATATGACAATAAAATCAGTGAATAGCGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGTTCTAGACAGTAGACAGGGTAAGGGATTAAAATGGAGGG # Right flank : CCTGAAAAATCTAAGGATGATAAACATGCGATCTCGCATAGCGAGTGCTTCGCAAATGCACTGGATTAACTGCCATGCGATCGCAACCGATGTCCCAAAACCACAAGTAAAAAACTGACTTTTTTCTGGAGGTTTTAAGTAAATACTCCCCTAAGAAGGTTTAAGCTCTTTGGATCCCCCCAACCCCCCTTAAAAAGGGGGGCTAATTGTTTTGTGTTTAGTTTATGAGAAGTTGGGGCTGCTTGGATCCCCCCAACCCCCCTTAAAAAGGGGGGCTAAATGCTTTATGTTTAGTTTAGGAGAGGTTGAAGCTGCTTATATTATAATAGATGGGGTAAGTGCTGGGGAAAAAAGAAAAAACTATAAATCTAACGGGGGTTAATAGGGCGCGTGCATTCACTATGCTATACATTAACAGATTTCACAATATAAATATTTTTACACATCATGTTTAGTCTAAAAGCCCCCCTTTTTAAGGGGGGTTGGGGGGGATCCAATGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 21088-18399 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUBZ01000037.1 Cylindrospermopsis raciborskii ITEP-A1 contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 21087 36 100.0 35 .................................... AACCCACCAGAGTTGGTGGGTGTGGTTGTTATGTT 21016 36 100.0 36 .................................... GTCCCACTCGTATTCGAGTATTTGGGTGTGGTTGAA 20944 36 100.0 38 .................................... TCATTTATAAGTCTATCAGATTCCTTCGTAGCCCTGGT 20870 36 100.0 46 .................................... ATATACCATCTCTCGGTGGGGTAAGCCACTACCCTTCTAGTGAGAA 20788 36 100.0 36 .................................... TTCTTAAAACTCAACCTAATTGGGTCTGTCTTGAAG 20716 36 100.0 36 .................................... TTTATCTCACTCACTAAATGGCGCTGGTTTTATCTC 20644 36 100.0 37 .................................... CAGACTGGATAATATACCCGCATCAAATGCTGTAAAT 20571 36 100.0 38 .................................... TAGTGCTAAATATTACGACTTTACCCCGCACCCAAAAA 20497 36 100.0 47 .................................... GGAAGGGAGGATGAGGACGATAGCAAAAGAGAGAGAGACGAAGACAA 20414 36 100.0 45 .................................... TCCCATTACACGCGTCCCCTCCCCCCCTAGTACTCGTTATGGCAA 20333 36 100.0 38 .................................... TTCTAATCGCGCTGCTTGCAGCGTCGATATTCTTGAAG 20259 36 100.0 44 .................................... GTGTGTGGCCATGCCCGAGGCTCGGGCTCGAGGTGGGTGCAGTT 20179 36 100.0 38 .................................... GTAGAAGTAGACAAGCCGCTTGCGGGTCTACTTTAACT 20105 36 100.0 40 .................................... TTAGTACATCACGGGTCCTAACCAGCATGGCCCGGTAAAA 20029 36 100.0 46 .................................... TTCTTTTTTCTTCAGTCAACATAATATATACCTTCCTTAACAGTGT 19947 36 100.0 43 .................................... TTCATGTTGCCTCCTAAAAGTACAGAATTGTAACCCAGCGCGA 19868 36 100.0 41 .................................... GAAAGAAAGGAAACATCAACGTCCCGCGCAATGCGTATGCA 19791 36 100.0 35 .................................... GGGTTAGTAGAAAAGTCCCCTATGTAATAAAAAGA 19720 36 100.0 40 .................................... CCAGACGCCCCCGCCTGGGATTTGCTCCCAGAGGAATTGA 19644 36 100.0 38 .................................... CGTCCAGCATCAATTTCTCCTTGGATGACTCCAAGTTA 19570 36 100.0 47 .................................... GTACCCATTCTGCGCAATTGACTTTTCTATTACATCAAACATATCGA 19487 36 100.0 36 .................................... TATATTTCATTACCTTCTTTGGTGTATGAGAATGAT 19415 36 100.0 42 .................................... ATTAACCTGGATGTATACTCCTGGTTAGGTCAGGCTCCTGTA 19337 36 100.0 38 .................................... TTTTCCTCAACTGGTGGGGAAAAGGGTAAAACTTCTAT 19263 36 100.0 32 .................................... TTTTCTAGACGTTCAATTTGTTGTTCTTCTTG 19195 36 100.0 40 .................................... TTTTAATTCGATTTTGGCTTGTCTTTCCGCAAGCCTTGAG 19119 36 100.0 36 .................................... GTAAAATTGTATTGGCGTATTCAATCGTACCAAATT 19047 36 100.0 46 .................................... TCTAATTGGCAAATATTGCTTATAAGAGACATTTCTAATTTTTTTC 18965 36 100.0 49 .................................... TCTCCCATGTTAAACATCCAACATGGTGAAGGGCTGGGGGGCTAAAGAA 18880 36 100.0 45 .................................... CCGTGCGGTAACCCGCAGTACCCCCTCTCGCGGAGCACATCCCTG 18799 36 100.0 35 .................................... TTATGGGAAAATGATTAACCTGGATGTATACTCCT 18728 36 100.0 39 .................................... TTTTGAGGGAAAGCAGAGTTTTGGTATTGTTCCCATAAC 18653 36 100.0 35 .................................... ATTTGAGTTTATGAGTTTGATAGTATTTTCGTTAT 18582 36 100.0 39 .................................... TATCAGGTCTTTTAACTATAGATGGAGTTGTATTAGTTG 18507 36 100.0 37 .................................... GCCAGGGTTCCAGATTATCTTCTGGACAAGCTCGGGA 18434 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 36 36 100.0 40 GTCCGCTTTCATCTAGGAAGTGGAATTAATGGAAAC # Left flank : GGTTGGGGGGGATCCGATGCTATTAAACAACTCACATTTCCACTTACCCTATAAAAACCAACAGTCCCAGGGAAAAAACACTCTTCTCTCCAGGGGAATTTTGGAGGGTGGTAAAAGGGAGATCTCACATAGTGAGTGCTTCGCAAACGCACCAAAAATCAAGACTGTGTTTTTTATCACCTTTCTAATTTATTATTAGAAACATGGAGAGAGTATAGTTATAACAACACATTTGGGATAGATTATTGAAAAATTTTGTAGTTAATGTAATAATAGAAAGAGAAATAAATATGACAATAAAAGCAGTGAATCACGAAAAAAACCGAAGGTCAAAGAAAAAGGCTGGAACGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAAGCTGAAATGGGATTTTTTTTCTGACCTTCGGAAAGAGGGTCTAGACAGTAGACAGAGTAAGGGTTTAAAATGGAGGG # Right flank : TCAAAAGCTATCCATTTTGATGATCACTTAATGTTGGTCGTTGCAGGGCTATGGAACTTCTATTTGGATGCAGCATAAATTCAATCAGGATGGGGGAAGTTCTGTCGTCCAAAAAATATGCTTTTATTTCCCAACAGCTCTAGTATATGTTCTTGCCCACAAAATCCAAATCTTCACTAAAGAGTTTTCGACATTTTTCACATTTAAACGGAATTCGGTCGAGTGCCATGCTCTGAGCATCAGCGCCCCCTTGAGAATGAACCTGTCAGCATGAGGAGATTGCGACATTCGGTACAGGAAGCGTTCCATCGCATAGTACTGAAGTAGCTCGCTAAATGGCCGCTGTTCATCTTTCGCCCTGTTTAGAAGACGTTGACGGACAGAAGCAGAGATATTTTTGAGGTTTTTCGCACTCATACCAGTACCTCTAGGTAGGGTTTCATCGCTGCCTCAACCCGGCAGATTCTGGCATATTCAATAAGCTGCCGGGGGTTGAATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTTTCATCTAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 5923-5459 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUBZ01000054.1 Cylindrospermopsis raciborskii ITEP-A1 contig_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 5922 36 100.0 35 .................................... AACCAAGAAGCTGTTTTAGGTGGTACAGTAGATAC 5851 36 100.0 37 .................................... TTGTTACTCCAGAGAATAAAACAGAATTTTTACGTGC 5778 36 100.0 36 .................................... GTTATATTAAACACATATAATATATCTATTAGAATA 5706 36 100.0 34 .................................... TTAGAAGTTTCAGAATATTTGGCTGATCTCGTAT 5636 36 100.0 34 .................................... TTAGAAGTTTCAGAATATTTGGCTGATCTCGTAT 5566 36 100.0 36 .................................... TCACAAGATAGCCCCAAAGACCCAATTTATTTGCTT 5494 36 97.2 0 ..........................T......... | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 99.6 36 GTGTTTAAACCTTTGATGCCATTAGGCGTTGAGCAC # Left flank : GTTGGAGAAAGGTATATAAGTTGTTGGAAGGATATGGTGACAGAGTGCAATACTCAATTTTTCGCTCTTGGTTAACGATGCGATCGCGGGAAAAACTAAGATGGGAATTGGAAAGAATACTAACGGATGAGGACAGTTTACTACTAATTCGTCTTTCTAATCAGTGCGTGAACGATATACGGAAGTATAATCGTCCTAATGCTTGGTTGTTACCAGATCAATGTTACAAAATTTTTTAATGCAAGCACTGTAGATTGTTAAGTTAAAAAGAGCGAAAGGAAAACCAGAAAGTCTTTGAGAGTATGGGGTTGAGCATTTTTGGGGTTAGGAGAGGTGCTTGCATTTAGTCTGAAAACCATTCATAGCAAGTGATTGAGGAAATTTATCGGGGATTGAAAATTCAGTTGGGAGGACAATTTGAGTGAATCTCTTGCATTTAAAATTTGATGCTTGTATAATTAGGAAAGAATACCTTTACAATAAGGGTTTCAGCCACCGCT # Right flank : ATAAAAAGTATTAAGATAGATAAAACTATGTTAACTCGTGAGAATTTTTTTTGAGGCGGAAAGTTTTTTGCCGGGTGCTTAGTTTATCCTTTTCACTAAGATAAGGAAATATATATGGAGTATATACATGTCAAGACATTTGGAAAGACTACTGGAAATAGACTCAATGATTAGAGAGCGAACCAGATTTACAACCCAGCAGATGGCAGAAAGATTGGAGGTTAGTGACCGCACAATACGCAATGATTTGGCATTCTTGCGTGACCGATTCAATGCTCCCCTAGCGTTTTGTTCTGTTAAGGGACATCACTATACAGACTCGGAATGGCGATTGCCTAGTATTAATCTGTCTATGAGAGAACTGTCTGCGATAATGCTAGGAGCAAAAATGCTCGAATCTTATACTGGCAGTGCTTATGTGGACGATTTAGATTCCGCAATTTTGCGTTTAAGTGAAAGAATACCAGATAAAATCCGAATTAATAGAGAAGAAGTAGGAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTAAACCTTTGATGCCATTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 2955-653 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUBZ01000053.1 Cylindrospermopsis raciborskii ITEP-A1 contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 2954 36 100.0 40 .................................... TTCGTCAACGCTTTCTTCATCATATCTCTTGCCATATTAA 2878 36 100.0 44 .................................... TATCCATCATTTTTCCAAAATGGCGGTAGGCACCTGCCATTTGA 2798 36 100.0 38 .................................... AAATCGTGTGGTCTTGTCCCCCTCTGGGGTTAGTTGTC 2724 36 100.0 34 .................................... TTCATCCCAACGATGTATAAACCACTAAGGAAAT 2654 36 100.0 48 .................................... AGGCACATGCCGTTTGATGACTGGGATCTCTTTACTTTAAGTTATCAC 2570 36 100.0 31 .................................... CTGAGAGCAGGGTTCTTTACTAATGCTGTAT Deletion [2504] 2503 36 100.0 50 .................................... ATCTCCTATCACATGTTCGCAAGAAGATAATAAGCTGCTAGTAAAGGTAG 2417 36 100.0 39 .................................... TTTCAAGGAGCGGCAGACGCAGACTACCAATTCTCTCCA 2342 36 100.0 43 .................................... AAGGATAGAGACGAGCGGCTGTACAGTAGACTTTTGGAGAGAA 2263 36 100.0 40 .................................... GGGAAAGGGGATACTGCCTACGAGGGAGCACGAGGACCTA 2187 36 100.0 40 .................................... TTTTGCCATCCACTTTTCAAAACTCTTGAATGGCAACTTT 2111 36 100.0 40 .................................... TTGTAGGGGAAAGAGATAAAACTGCTCACTCAAAAGCTAG 2035 36 100.0 42 .................................... CACCAACAGATGTGAATAATAGAACCCCCTAGGCGGGGGTTC 1957 36 100.0 47 .................................... TTTTCAGTAGAGGTCTTTGGAGACCCTGAGTAGAGGAACGCAATGGT 1874 36 100.0 39 .................................... TAATGCACTGCTGTCTACTCTGGCTAAAATTCCAGCCGA 1799 36 100.0 33 .................................... TTTATAAGAACTTCTAGCAAGTCTGAGTTGCTA 1730 36 100.0 37 .................................... TGCAAGGGAAGGAGGCATGGGCCTCCTTCCGGTCTTC 1657 36 100.0 39 .................................... AAGAAAAAAAGCCACACAAGCAGGCAGAATAATGTATTA 1582 36 100.0 39 .................................... CTCAACTATATAATCATATTAATGTTTCTAATTCACCCA 1507 36 100.0 39 .................................... AACGATGAGATTTTGTATGCGCGTGCTTTGAATCTTTTG 1432 36 100.0 37 .................................... TTGTCATTGCCTGACTCATGTCAAGCACGAAATAACC 1359 36 100.0 35 .................................... GGAGTTGTGGACAGTCAAGAACAAGGTCAAAAAGC 1288 36 100.0 38 .................................... ATCGTCGATAATTACAACCCAGTAATTAAATGGGTTGA 1214 36 100.0 34 .................................... TTCATTTTCTAATAAATTAAGCAGTTGATATTTA 1144 36 100.0 38 .................................... CCCTTATCATAGTTTCTAGAGCAGGCCTGGAATAGCAG 1070 36 100.0 48 .................................... AGACTAGCAGTCCTTATTATACTCTGCAAAAAGCACACAATCTTGGTG 986 36 100.0 37 .................................... GTTCCCCAAAGGCCTGTTTTCCGAAGTAAGGAGGAAT 913 36 100.0 38 .................................... TACACTGTTTATACCTGCGATCCAGAGGATTGTAGGGA 839 36 100.0 37 .................................... TCAGCTTGACTGATAACTACTAGCCTCATTGGAGCTC 766 36 100.0 42 .................................... AATTTCTAGCTTTAAAATTATAGATAAATACTTTATAAGCAT 688 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 31 36 100.0 40 GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Left flank : CTTACACTCTACTTAGCTTTTTGGGCAATGAACTCTGAAAAGATAGGGATTATTTACCGCCCTAACGCTTACCGTAGAACTTCCAAAGCCTCCTCCTCGGTTTCAAAGATTTTAAATATTGTGTCCATCAATAGTTCTTCAAATACAGATTTGATTTTTGGCGGCATCTCGCAGAGGCAGAAACTGCCGCCCTCTTTGTCAGCATCCCTCATACCAGCCACCAAAGCTGTTAGACCACTCTCATCAATAAAATTTACCTCCCTGAGATTCACAACGATATGCTTAGATAGTTTTTTGCTAATACACTCCTGTAGTTTCAGCCTCAATTGCCAATTAGTGTCTCTATTTATAGGACCTGCTGGTGTTACAACAATCACCACAAGGCCGTGTCCACTGAAGTCGCCTAAGCGATGGCTTTTTATCTCTATCTGTAACTGACTCATTGTTGCTTCTTTTTCTACCATTTGTAAAGTTGACGTTGACTGGTTGAGCGTAACAGT # Right flank : CCCTCGATTTTAACCCCTTACCCTGTCTACTGTCTAGACCCACTTTCCGAAGGTCAGAAAAAAAATCCCATTTCAGCCTCTTATACACTCTTAAAAAATGCCTCAAATCCTTATGGGACAAGGGACCGAGGTTCCCGACGACTTTACTAGCTTTCCGGCCATTTTCCTTGACCTTCGGTTTTTTTCGTGATTCACTGGTTTTATTGTCATATTTATTTCTATTCCTATTATTACATTCACTACAATATTTTTCAATATTTTATCCCAAATATCTTGTTATAACTATACTACCTCCATTTTTCAACAATACTTTATAAAAGTAATAAAAAACACAGTCCCCATTTTTAGTGTGTTTGCGAAGCACTCACTATGTGAGATCGCACTACACTCGCACCTGCCATTCTCTCATAGACTAGTCTTCACTATTTCTTTTTGCTGATTACTACGTGATATATCAAGGTTTATCGTAGCTTTTCTGCCTCCATACTAACACCTCTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 7949-8657 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUBZ01000053.1 Cylindrospermopsis raciborskii ITEP-A1 contig_53, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 7949 36 100.0 35 .................................... GATTGTCCGACTAATATTGAGTATCGAATAATTTT 8020 36 100.0 39 .................................... AACTCTAGCTTTACGGCTAGAAAAGAATACTCCCTTTCT 8095 36 100.0 37 .................................... AGTAACTTGGCTTGTTTATATTGTTCCAAATTGCGTA 8168 36 100.0 40 .................................... GAGTTGCAAGCTGATGCTGTGTTGTTGGTCATGGTTCTAG 8244 36 100.0 35 .................................... TGGCTTGTTCGCATGAATTGGGGCATTTAATCGCA 8315 36 100.0 42 .................................... CATCCATTGAATCATACCGTGGCATCCATCTGTTGAATAAAT 8393 36 100.0 43 .................................... TAAATGACCAACTTGTTAGATTTGGAAGCATTGGTAATATAAC 8472 36 100.0 39 .................................... TTCATAAGCGTCCTCTTTGGCCTTGGCTACTTTATCCTC 8547 36 100.0 39 .................................... TTTCTTAAAGAAAGTAAGTTCTTTCTTTAAGTACTTTAA 8622 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 10 36 100.0 39 GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : GATCGCACTTTATATGGAGGCAGAAAAGCTGCGATAAACCTTGATATATCACGTAGTAATCAGCAAAAAGAAATAGTGAAGACTAGTTTATGAGAGAATGGCGGGTGCGAGTGTAGTGCGATCTCACATAGTGAGTGCTTCGCAAACACACTAAAAATGGGGACTGTGTTTTTTATTACTTTTATAAAGTATTGTTAGAAAAATGGAGGGAGTATAGTTATAACAATATATTTGGGATAAAATATTGAAAAATATTGTAGTGAATGTAATAATAGAAATAGAAATAAATATGACAATAAAACCAGTGAATCACGAAAAAAAACCGAAGGTCAAGGAAAATGGCTGGAAAGCTAGTAAAGTCGTCGGGAACCTCGGTGCCTTGTCCCATAAGGATTTGAGGCATGTTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAGACAGGATAAGGGGTTAAAATGGAGGG # Right flank : GCGTCCTCTTGTATGGTTATATCGCATATCCTGCATTATTCATGAAGGCAAAAACAGGAAAAACAAAACCTAACATTTATACCCCAATTTATGGCGGAACTAACTTAATAAGTAAAAAGTAAATTAAACCTAATTAAAATCCCTGATTTCAACCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 2444-922 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUBZ01000089.1 Cylindrospermopsis raciborskii ITEP-A1 contig_89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 2443 36 100.0 34 .................................... AATGGAATGACTGGTGCAAGGAGTGGAAAATATA 2373 36 100.0 47 .................................... TAGATATATTACGGCGGGAGTCAAAGAAGGCTTCCGCATCAAAGTCA 2290 36 100.0 35 .................................... GAGACAACATCTCTGGATGGGACTTCTCAGCTGGA 2219 36 100.0 35 .................................... ATCCAAAACGAGTTGAGGGATCTATTAAGATCTCA 2148 36 100.0 41 .................................... TTCTCAAAGCAATGAATCACTATTAATTCACAAATACAGTG 2071 36 100.0 40 .................................... CTTTCAAGAAATACTGGTTTAGGGAAGGAGTAGTTATCAT 1995 36 100.0 38 .................................... ATCCTCAATCCCGATCCAAGGTATCCATCATTTTTCAA 1921 36 100.0 39 .................................... TAGAAATGTTCGAAGCAGCCCACGGAAAAGAAGTTCGGA 1846 36 100.0 35 .................................... GCTACTTTCTAGCGCCCATTCTTTGTCTTTACGAT 1775 36 100.0 35 .................................... GGCCAGTGCGTGGTAATCATCTGCAGACATTTTAC 1704 36 100.0 39 .................................... GCGGAAGGTATTCTTCAAGACTATCGACGCTGCAAGCAG 1629 36 100.0 38 .................................... ACGATAGCCAGTAAGGGGGTCAGTATCAACAGACTCAA 1555 36 100.0 42 .................................... CCTTAAGAAGTTTTTTGGCCTCAGCCTCGGCCTCAGCCTCAG 1477 36 100.0 37 .................................... GACTTAACAATTTGTTGTCGTTGGCGTTTTTCGGTAA 1404 36 100.0 39 .................................... ATAATGAATAAAGCCTTGGAAAGGCCACAACAGTGGCAT 1329 36 100.0 36 .................................... AGCGTTAATTTCCCCAATCTTTCCAGTGCTTTTAAT 1257 36 100.0 39 .................................... CTCGAGGACCGTCATTCAGGGACCAAACTTTTACGTGGC 1182 36 100.0 42 .................................... CATCCAACAGCATGTCTAAAGTTGCGTCTAGCCCCCTCACAG 1104 36 100.0 38 .................................... TCTTTTAATATAATTTGTTGTTCTATTTTTGTCAACTA 1030 36 100.0 37 .................................... GATTTAATAGGAGAACATAATGAATAAAGCATTGCAA 957 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 21 36 100.0 38 GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Left flank : TGCATTTTTCTGGGTTTTCTCACCGATTAGTAGCACTGCGCTTTATGGAAGTTAAGGACTACATCGGGACCAGGGCGTTTTCATTCTCCAAATAATTTAGTAGGTCGCGTTCAAGTGAGTTACTATCAGACTCTACGGTAAAGTTATCTAAGTTATTACGCAGCAATTCTAATTGTTCTTCAGTCAATCCCGGAATTTTTAAAATATCTTCTACTTCTCTATAAGGCGAATGAGTAATTACCAAACGAGCAAGTACGGGATAAAGTCCAGGATATTGACGAAATGCACGTGTATTTGTTGGATTATTAATATCTATTTTTTGTCCAAACTCCGTACGAAGCTTGGCATCAACCATATTGAACTTCATTGGGTGGTAAAAAGTCCAATTGTCAGCTAGTGCTGTTTGGGAAAATGCTATTCCTGAAATTAGGAACATAGCAGTTACGGACATCAATAAACATTTTAGAAGTTTCATACCTGATTTTATGTTTGTGAGTTTA # Right flank : CCCTCCATTCTAATCCCTTACCCTGTCTACTGTCTAGACCCACTTTCCGAAGGTCAGAAAAAAAATCCCATTCTAGCCTATTATACGTATTTAAAACATACCTCAAATCCTTATGGGACAAGGGACCGAGGTTCCCGACGATTTTACTAGCCTTCCAGCCATTTTCCTTGACCTTCGGAATTTTTTCGTTATTCACTGATTTTATTGTCATATTTATTTCTCTTCCTATTATTACATTAACTACAATATTTTTCAATATTTTATCCCAAATATCTTGTTATAACTATACTCTCTCTATTTTTACAAAAATAAATTATAAAAGTGATAAAAAACACAGTCACGATTTTTGGTGTGTTTGCGAATCACTCCCTACGTTTGTTTGTAAAGTACTCGCTACACGCGATCGCTCCTAACCATGTTCACAAATTTCCCTTGAGAACGGAGAGGTAAGCGAATATCCAGCACATTAAGGAAGTACTCGCTACGCGAGATCGCTTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 451-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUBZ01000169.1 Cylindrospermopsis raciborskii ITEP-A1 contig_169, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 450 36 100.0 44 .................................... TTACTTCTAATTTCACAGCGATGAAAGAGTACTCTCTTTCTTCG 370 36 100.0 39 .................................... CTGCTGCTTATTCCATATCTCTTGTTGTCTGGAACTTCT 295 36 100.0 39 .................................... TGGGTTGGCTTTATAAATATTACGCACATGCTGCCCTTT 220 36 100.0 38 .................................... GACAGCAGAGATTTAAGATTCGCTGCCATGCCATCTCG 146 36 100.0 38 .................................... CTCATCAAGGATTTGGAATTCTACCTCCCAGCAGTCCA 72 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 6 36 100.0 40 GTTCTGACCTTCACTAGAAGGTATAGGTATTGCGAC # Left flank : TACGTTTGAGAACAATATGGAAGCGACTCTAAGACAAAGAGGTTTTACCAAAATAGAACTTGACATATGATGGGTGACACGGGCGATCGCCTGACTTTTACTTCAGTGCGATCGCGAAGCACGCCCTACGGGCGATGGCATTAAACACACCAAAAATCGGGACTGTGTTTTTTATCACGTTTATAATTTATTATTGGAAAAATGGAGGGAGTATAGTTATAACAAGATATTTGGGATAAAATATTGAAAATTCTTATAATTAATGTAATAATAGGGAGGGAAATAAATATGACAATAAAATCAGCGAATAGCGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGACTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATATTTTAAATACGTATAAGAGGCTGAAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAGACAGGGTAAGGAATTAAAATGGAGGGG # Right flank : CTATAGTAGTAACACCTGATGGCAAAGTAGTAACTAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTGACCTTCACTAGAAGGTATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //