Array 1 18087-15255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIN010000030.1 Nonomuraea endophytica strain DSM 45385 Ga0415315_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 18086 30 96.7 31 .............................T ACGACGATGGCGGCGGCGTGTGGGAACGGGA 18025 30 96.7 31 .............................C CAGTCCTCCCCATCGCGCTCGTAGCCCAGAG 17964 30 93.3 31 ............................AA CTGGATGAGGCGCGGGCCGTCCGAGGATGTG 17903 30 96.7 31 .............................C TTCAATCAGACCTCCGGCGACGGCATCTCAT 17842 30 96.7 31 .............................T CCAGCCCTGCCCGGACACCCGGCTCGGGGAA 17781 30 100.0 31 .............................. GATACCCGCCCACCATCCGAATCAGCAGGTC 17720 30 96.7 31 .............................T CATCGGCGAGCGCCGCAGACAGCACCTCCCC 17659 30 96.7 31 .............................T GCCGCTCGTCGTCAAAGGGTACGGCGACCCG 17598 30 100.0 31 .............................. GGGTGTCATGGGTGACGGGCGGCTGGTCGTG 17537 30 100.0 31 .............................. AGATCAAGATCCTCACCTACACCGGCACCAG 17476 30 96.7 31 .............................C CGGTGTCGCCGCCGGAGACGGTGGGGTTGCC 17415 30 96.7 31 .............................T AAGGTCTGGCCGTCTTCGTGACGTCTATGAT 17354 30 100.0 31 .............................. CGCCCTCGCCGCGCATCTGGCTGGTGCCGAC 17293 30 100.0 31 .............................. TGGCCGTGCTCGCTCTGGAAGCCAACCCAGA 17232 30 100.0 31 .............................. TCTGCGCAACCAGGACGAGGATCGGCGCTAC 17171 30 96.7 31 .............................T CTGCCTGCTGCGTCCAAGGGCTGCCGCCAGA 17110 30 100.0 31 .............................. TGTGGATCGGCGTCTCGGCCGAGAACCAGCG 17049 30 100.0 30 .............................. CCTCCCGGCCGGGTTTCGGCCAGGACCTTC 16989 30 96.7 30 .............................A TGCTCACAGTTGCAATACAAGGGTTTCTAG 16929 30 96.7 31 .............................C TGGCCAGCGCCGGCCGACGACGAGAACTGCT 16868 30 100.0 31 .............................. GCGACGTCCAGACCGGTTTCGCGTGGAGTAA 16807 30 96.7 31 .............................C ACTGCTCGTGTGACCTGCGAACCCGGTCGGT 16746 30 93.3 31 ............................TT GGCGTTCCCGCATGAAGTACCCAGGCAAATA 16685 30 100.0 31 .............................. CCACTTCGCAGGTGTTCGGCCCGTGGGGTCC 16624 30 96.7 31 .............................T TCACGCCGCCGCTCGGATCCGGGACGACGAA 16563 30 100.0 31 .............................. CTGATCTGGACGTGCGGCGATCTGTCGCGTC 16502 30 96.7 31 .............................C CAGCAAGGTGGAACGTGCCCCACCCGACCTT 16441 30 96.7 31 .............................T CCTCCGCCTTGCTGGTCTCACCCCGGCGCAG 16380 30 96.7 31 .............................A CCACGCCCCGCCGATCCGACCTGCCCGAGTT 16319 30 90.0 31 .............T...........C...C CGCGAGAGCACGATGTGCTACACGACGCGAA 16258 30 96.7 31 .............................C GCCCTAGCATCGCTGGGGCCAAGCAGCTCGT 16197 30 96.7 31 .............................C GCCCTAGCATCGCTGGGGCCAAGCAGCTCGT 16136 30 96.7 31 .............................C GACTCCAAAGCGACATAGCCAGGAAGCAGAC 16075 30 100.0 31 .............................. ACCTGCTGCGGCGCCACCGGGCGCTCCCGCC 16014 30 93.3 31 .........T...................A TCAGAGCCGAGATGGCGGCCAGGGCGGTGAT 15953 30 100.0 31 .............................. TGTCGCTGCCCATCGCGTCCGTACAGACCTC 15892 29 93.3 31 ..............-..............A TACTTGTGGCGACTTGGTGCACCTTGTTGCG 15832 30 96.7 31 .............................A AGTACGGGGGGTGTACGTTCTCCTCCGATCC 15771 30 93.3 31 ..........T..................T GGATGCAGCCCGCCCAGGCACCACACTCCGG 15710 30 96.7 31 ..........T................... TCTTCGGATCTACCGCGTACGCAACCGTGGC 15649 30 96.7 31 ..................A........... GCTCGAACGCGGCCGGGCTGCTGCGTTACGC 15588 30 96.7 31 .............................T TCATCAAGGGCACTGGGCCCGGTGCGATGTC 15527 30 96.7 31 .................A............ ACTTCGCGCTGACCGGGGAGCGCTGGTCAGC 15466 30 96.7 31 .................A............ CCCACCAGTGGCCGTCGCCGAGCTGGCGGAG 15405 29 93.3 31 ..............-..............C GCTACCCCGCGGCCCGGGGCCGCCCCCACAC 15345 30 96.7 31 .............................T CGACCCGGCCGGAGACCGTGACAGCAGGTCT 15284 30 93.3 0 ...........................T.A | ========== ====== ====== ====== ============================== =============================== ================== 47 30 97.0 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GGTGATGGTCCTGGTATTGACGCGCTGCCCAGCAGGATTACGGGGCTTTCTCACCCGCTGGCTCATGGAGATCTCGCCAGGTGTCTTCATCGGAGGCCCGTCCGCCCGAGTCCGCGAGGCGCTGTGGGCCGAAGTGCAGCAGTACGCGGACACCGGACGAGCCCTACTCGCGCACTCCAGCGACAACGAGCAAGGCTTCGCCTTCCAAACTCATGATCACCATTGGCACCCGATCGACCATGAAGGACTCGTCCTGATCCACCGGCCCAAGTCGAAACCAGCAGTACAGGCAGAAGCTGCGCCATCCGGGTGGAGTAAGGCCGCCAAGCGCCGCAGATATGGGCACTCCTGACGGGTGACAATCGCTGCGACGATCCAGCCTTTCGGAGGGCAAGAAGCGGTTCAACCCGACGCTCAGGACCTTGGAGGGCGTTATGACCGAATTATCGAAAGTGCTCCAGAACTCCGCTACGCCCTCCTAAACCTGCAGCTCGGCGAGT # Right flank : GGCTCAAGCACGTCAACAAACGTGCCGCAGATGCTGTGCTTCCACAGGCGGGATGGTCCCGACGCGCGCCCGTAAAGCTCTCCTCGGGCTACAGGATGGAGGCCTCATTGCGGCGGCGAGTTCGGTCGGACTAGCCCCAGAGGGCTACTTGAAGAGCGTGACACCCAGCTCATCCACCTGGCCTCCAGATGGGGATGCACTGGTCAACCTCACAGGCCTGACGGCAAAGGTCCGCGCAAAGTGTGGCAGAGGCAGACTCGACGCGAGATGCTTAGTTGCATGGCCAAGATGACCATGACCGCGCAGAGATGGGATGAACTCACGGTTCTGCTGAAGGATGAGCAACGTCTTCAGGCCGAGTATCCCAGAGTAGCTGAGTATCTAGATATGGCAGAAGGGCTATCAGGAACGGGCGACGATCAGGTAGAAGCGGCTTTTGGCCTACGGTTCGTCCACTATATGACGGGTGGAAGCACGGTTAGCCCGAACCCGTACTGGGA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27566-28386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIN010000030.1 Nonomuraea endophytica strain DSM 45385 Ga0415315_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 27566 29 90.0 31 .....-......................TC TGCAGCCATCTCAGGCTCCGCTATTCGTTGT 27626 30 100.0 31 .............................. ACGCCCAGCCCGCCGACGACGTACGGACCCT 27687 30 96.7 31 .............................A ACATCGAGGCCACAGCGGGGAGAAGTCGCGT 27748 30 100.0 31 .............................. CGCGGCCGATTTGCTCGCTTGGGCTTACGAG 27809 30 96.7 31 .............................A GCAGGTCGCTCGACATGGTGCAGATGTCGGA 27870 30 100.0 31 .............................. GTACGACCGGGCGGGGCTGGTGGTGCGGCTT 27931 30 100.0 31 .............................. TGCGCGCGTCCGGCCGGTGGACCCAGACGGT 27992 30 93.3 31 ....................A........A CCCACCGGCCCAGCCTCATGCCTGCTCGGGC 28053 30 100.0 31 .............................. GCATGCAGAAGGTGTCCGGCACCGGCCTGGT 28114 30 96.7 31 ............................A. ACGGGAGCAGGAGTGAGTGTCGAGGCGATCA 28175 30 96.7 31 .............................A TCGCCCCAATCGAAGACCTGCCCGACCTGTA 28236 30 96.7 31 ..............T............... AGCCCGGGTGCACGCGCGAGCGGATGGCCGG 28297 30 100.0 30 .............................. AGTCGTACGGGGATCGAGTGGTCGGGACTC 28357 30 90.0 0 .................A..........TC | ========== ====== ====== ====== ============================== =============================== ================== 14 30 96.9 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : ATCGTCGCCAGCCAGATCGCCAGGCGCCGCGCTTCCTCGACCGACAGCGGACCGGCGATGATGCGCCTCACCTGTGGCGGAAGCCAGATATCCCACAGCCTTGTCGCCACCGAGCCACTGTCGGCCATGTGGCTCCACAGCGGCAGCCAACCATCCGTTGGCCTGTCATGCTTGGCCCACACCGCATGGGCAGCCGACGACCAGTCCAGGCTCAGCCGGTCCCATAGGCTCCCACCATCGCGCATGAAGGTCATTAAAGAGCAGGGCGGGCTTACGTGCTGGCTATGTGGCGACAAAGTCGAAAAGAGACGCACCAAGAGGACGGTGTCGGGGTGACGATATGAATTTATGGCCTCTCAATTCCCCGATGGCCCTTTACTTCAAATATGCAAGTGAAACGTGATCCATAACCTCTATGGTAGCTTTTGGGTCATATGTCGGATCTGACAAAAGTACTCGAAACACTGGCCAGCGCCTGACTCCACCGCAGGTCGGCGAGT # Right flank : CGACGCCGTGCTTGTGGCCGAGGCTAGCGTTCCCAGAGTCACTCTTGAGAGTTCAGACGAAGTGGCCGCGGTTTCGCCGATACTCTCGTGCCCCCGTCAGAAGCGTCTTCGGGCGAGATATTCGGGCTACCTGCGGGCAGAGAGATGCAGAGTGGCCTGGAGGCTGCAGATGGAGGTCAACTTCTGGAGGGGCCTCCGGAGCCGGGTGCGTAGGTTCGAATCCTACAGGGGGCACCCATTACCAGCCAGGCCAGACACCGTCTGACCTGGCTTTTTGCTTGATCCGCCGGATGTCGGTCACGCCCGTACCGTTTCAAAACTCGCAAACATAGTCTGAGCTGGCATTTTCTTCGAATCAGCTATGCGGCTCGGTGGTACTCGTTGATGGCTCCGCCGAGCACCTTTCGACGCCGAATCCGGCCTTCCAGCGGCACCAGAACGTGCTCGTCTTGATCGGGTGGACGTTGTTGGCGTGACTGGTGCGGGCGATGGTTGTTGTG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //