Array 1 298382-294512 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNQ01000003.1 Bifidobacterium sp. N4G05 N4G05_Contig_3_consensus_sequence, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 298381 33 100.0 35 ................................. AATCCACGCTCTCCATGAGGAGAGCGACCGAAAAG 298313 33 100.0 35 ................................. TTGGACATACGCCCACCATGCCCAAAACGCATCAA 298245 33 100.0 34 ................................. GCCATATCGTCGGAACCTATCGACGTGTGGTGTA 298178 33 100.0 35 ................................. ATGGAAGGCCGTACCCTGAACCCCAGCGCCCGGTA 298110 33 100.0 35 ................................. TCGTCTGGTCAATCCATTGTGTAAAAGTAATAGCC 298042 33 100.0 34 ................................. TACGTTGTCCGCTCCAAGTGCGGTGAGGATTTCC 297975 33 100.0 33 ................................. TCGCATGGTACGCCCCAAATAAAAGACGAACAT 297909 33 100.0 36 ................................. GTCGAAAATCGGATAATATTGAGTGCTCAAGTGCAG 297840 33 100.0 35 ................................. GCGGAAGACTATGCAGGATATCCACAAGAATACGG 297772 33 100.0 35 ................................. CGACCTGCTCTCGGACAAGACAGTCGCCAATGCCA 297704 33 100.0 33 ................................. CGTAGTATCATGATTGGCATGAGCATTGCATTG 297638 33 100.0 34 ................................. CTCACGTCGGCCGGCTGCGGCTCGACATCGACCG 297571 33 100.0 33 ................................. TCCACCAGTTTGGACAGCATGGCGGTGGTATCA 297505 33 100.0 35 ................................. CAGTCTAGTGTGCGACACGCCAAACTTGATTATTA 297437 33 100.0 34 ................................. CTGGCACCGTTCGCGGCCGAGCTGAAGATGCCGA 297370 33 100.0 34 ................................. CAAGTGTTGACCACTGGCGTGGCCGTGTTGCCTT 297303 33 100.0 34 ................................. GACTGGGACAGCAGCCGGCGCGCCAACATGGCCG 297236 33 100.0 34 ................................. ATCGACCCCGAGGCCGTGACCGTGTGGGAGTCCG 297169 33 100.0 32 ................................. CAAGTGTTGACCACTGGCGTGGCCGTGTTGCC 297104 33 100.0 34 ................................. GTTGGCCACAAATCGCAGTTCGCGGCCACACAAT 297037 33 100.0 34 ................................. CAGTACGTGAAATTACTCATTGCCATCAAATCTG 296970 33 100.0 34 ................................. GGATACGGATATCCATATGCCGAAGCGCGCGTAG 296903 33 100.0 36 ................................. ACACCGCCAATATTGCCGGACGTGACCATAAAACGG 296834 33 100.0 35 ................................. CACGTAGGCGTTGCCGAGCTGGATATCGTGCTGGA 296766 33 100.0 35 ................................. TCATAATCGCCTTGCGCCGTGGCTTGCGCCAGCTG 296698 33 100.0 34 ................................. GAGTCACGCCATGGAGTCACCCACGACATAGCAT 296631 33 100.0 32 ................................. GTCGCCAAGGACGTATGCGACATCCTCGAACT 296566 33 100.0 33 ................................. ACGACGGCCATGATGCCGGTCCACAATGATTGC 296500 33 100.0 35 ................................. TTCCGTTGGCTGCACAAAAGCGGCCGGCGGGCCGA 296432 33 100.0 35 ................................. TTCTTTGGTGGTGTCCAAGACGCACACCCCACTCT 296364 33 100.0 33 ................................. CTGCGGGAGCGTTTGCCTTTGAGGAACTTTTCG 296298 33 100.0 33 ................................. ACCACGCGCGCCACCAAAAAGACGGTCTCGCTA 296232 33 100.0 34 ................................. TCGCCGGCAGCGACACCGCCAACTACAGCGACCT 296165 33 100.0 36 ................................. AACACGGTTAATTCCACCAGCTCATTACCGGTCTTG 296096 33 100.0 35 ................................. GGCGGGCATCGCCAACAATGACGGCACCATAACGG 296028 33 100.0 34 ................................. ACATTCGGTACGCTGTATGGTTTTGCGCTCACAT 295961 33 100.0 33 ................................. AACTTGCCGGTGACATGCTGTATGCCTCCGACT 295895 33 100.0 33 ................................. ATGAATCTTAAAGCATTGTCTAATTCAATTGAT 295829 33 100.0 35 ................................. TCGAAGTCCGACGTGGTGTTCGACTGGGGCGACGC 295761 33 100.0 35 ................................. ACATACGACATCAATTCCAACGGCCAGACCGTGAA 295693 33 100.0 34 ................................. AACGCCGACCGGCTGGAAGCTCGCCTTGTCCTTA 295626 33 100.0 35 ................................. AATGGATCGTCCCAATCGGCATGCTGGATATAGAG 295558 33 100.0 34 ................................. ATCGTCTACGGTTTCGGTCTGCCGTTCCTCTTCG 295491 33 100.0 35 ................................. CTGCAGGTCAGCCACCCACAGGTCATCGGCGTTGA 295423 33 100.0 36 ................................. CGTAAATGGGCCACCGCCTACACGCCATACCGGCCG 295354 33 100.0 35 ................................. AACGTCACCATCGCGCCAATCGCCATCGGCGGCGA 295286 33 100.0 36 ................................. TACCATGCGTGGGAGTCGATGGTTCGAAAGACGCTG 295217 33 100.0 33 ................................. CGATACGCCACGCACGGCGCGGTGGCTCCGCAA 295151 33 100.0 34 ................................. TGGCTGTACGACACGATCGACGTGACCGCGCAGA 295084 33 100.0 33 ................................. TGCTCGAACCTCAGGAACGATCCGGCCAACCGC 295018 33 100.0 34 ................................. TCGACGGAGCCAAATCGGTCGGCAAGTCCAGTGG 294951 33 97.0 33 .............C................... TCGGTCGAAGGTCTCGGCTCCGTCCCATGTGTC 294885 33 97.0 37 .............C................... CATACCTTGTCGGGCTTCGGATTACGCACGTAGACGG 294815 33 97.0 34 .............C................... AAATCGATGCAGGCGCTCGTCAAACGCCCCGGCC 294748 33 81.8 37 ...A...C..G..A..G...T............ ACGGTCAACATCAGGAAGACTCAAACCGTGAGCCGAA 294678 33 81.8 34 ...A...C..G..A..G...T............ CCTGACGTCCAAGTCCTTGGTCTGCGGATTCCGG 294611 33 81.8 34 ...A...C..G..A..G...T............ TTTTGGACCGTTTGGTCAAGCGAAGCGTGACCGG 294544 33 93.9 0 .............C..................C | ========== ====== ====== ====== ================================= ===================================== ================== 58 33 98.8 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CCAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGTAAAATGGTATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGTGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTGAAAACTAAATAATGGACATTAAAATGAGATAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : GACGTTGACCATTGGGTTATATTCCATGCTATGCCGGCCACGGCTAAGTTTTTGCGTGAAGTTACCGAGTAGGAGGTGTGTTGTGATTAGTGATGCCGAGTTTGATCGTTGGGGCGAAGCCGCCGAACGTGGCGATTACGGTGGAAGTAAGGGACCCGTGATGCATGGTCCTATTTTCCCAGTGGACGCCGATTATCCCGATAGTGTCTCGTTGGGTGTTTCCGCGGACATGTTGGCGTTGGTTGACGCGAAAGCTAGGCGGTTGGGCGTTGGGCGTGATGACGTGATACGCCATGCGATAGCGCGCGATCTCGTTGACGCTTGAGCATTGTCCCGGTTGCTTTTGGCTGCCGGGATTTTGTTTACTTGAACATGTTTGTCGGGGTTCCCGCCTGATGAAAATACCCCAAGAGTGTTCCGCACTCTTGGGGTATTGCTTAAAGCAAACTGATTTATAAGCCTTCTCGTTCTAACGCGGGGCGTTCACCGTTATGCTGCCG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //