Array 1 173882-175437 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033896.1 Corynebacterium choanae strain 200CH chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 173882 29 100.0 32 ............................. TGTCCGTATTTTCACGCAGCCGACGGCCACGG 173943 29 100.0 33 ............................. CCGGTGGACTACATCAAGTTGCGGCTCGCCAAG 174005 29 96.6 32 ............................A CGTATCCCCCGCCTTACGATCACGAACACCTA 174066 29 100.0 32 ............................. AGCAGGGAATCAGCTTTCCGCCGCCCCCGTTT 174127 29 96.6 32 ............................T GAACCAGGCGACGTTAGAGATTGTGGAAAATG 174188 29 100.0 32 ............................. GACAAGTGCAAAAGCACCTCGTTGCCGTTGTT 174249 29 100.0 32 ............................. TGCTCACGCCCCCACCATCCAGGAATCGACGG 174310 29 100.0 32 ............................. CATGAGAGAAAAGCATATCGAACAAGCCCTCA 174371 29 100.0 32 ............................. CGCAAATATGGCTTCTTACCGCCCTCGGCAAC 174432 29 100.0 32 ............................. ATCAACCTTGTCACCATCCAGGCTATTCATTT 174493 29 100.0 33 ............................. GGCACGTCCGAGATCATCTCATCAGACACTTTG 174555 29 100.0 32 ............................. ACCGCCCCCTCATCGCGGGGGAACATTTTAAA 174616 29 93.1 32 ....................A.......G TACCCGCTTGTCGCGCCGCTCAAGCTCACGGC 174677 29 100.0 32 ............................. GGCGCGTCCGAGATCATCTCGTCCGACACTTT 174738 29 96.6 32 ..........A.................. AGCCGCCACAACCCCAGCACCGTCATCACCAG 174799 29 100.0 32 ............................. ACCCGATCCGAATACTCCATACCAAAACATCC 174860 29 100.0 32 ............................. GTCGATGATTTTGAGCACAATCTGGTGACGCT 174921 29 96.6 32 ............................G CTGGTAAAGCGGCGCTGATCGCTACAGCCACC 174982 29 96.6 32 ............................G GAACCACCCGCCATATCCATCGAAGAACTGGA 175043 29 100.0 32 ............................. AAGCCCCTGAGCTGTACGAAGCCGGACGCGGC 175104 29 100.0 32 ............................. TCGCCAGCGGTTTGGAGACCACGCTCATGCTG 175165 29 93.1 32 ..................T.........G CACACAGATTGGATAACCGCAGTAGCGGGCAA 175226 29 100.0 32 ............................. ACTTCTGGCACCTGGTCCAGGCCGACCAAACC 175287 29 100.0 32 ............................. TCTGAAGTCACCTGCCGCTGGATACTCAACGT 175348 29 100.0 32 ............................. CACGTGGTGGTGGGGGGTGACGTGCCTGGTGG 175409 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.8 32 GTGTTCCCCGCGCGAGCGGGGATGATCCC # Left flank : TCTCGTCGGAAGACATTGCCACCGATAAAAACACTCTATGGGATGGTAAAACCGGCAGTATTGCCGGTGGTGTTAATTACGGGGACGGTTAAGAGACAGCAGATGATGACGTTGGTTGTTACAGCATGTCCTCAACGCTTGCGAGGTTTCCTTACCCGATGGTTGATGGAGATCGAACCCGGAGTCTATGTCGGTAAGGTGAACGCTCGGATTCGTGATGCTTTGTGGGATATCACCGTTGCAGAAATCGCAGGTGGGCGAGCCATCTTGGTGTATCCCGACTCCCGGAAGGAAGCGGGATTTGAGGTGCGAGTTCATCGCACTACTTGGGAGGTGGTCGACTACGAGGGGCTAGCGCTTATTCGACGTCCGAGTACAACGAAGAAACAAATAATGCGGTCGGGTTGGTCGAAAGCCTCCAAAATGCGAAGAGCACGGCGAAACCGGAGTAAGTGAAGAAAATATGCCACTTCTGTTATACTATTCCCAGGTTATTTACT # Right flank : CCGGCCACTGCACGACCATTGCCCAACGTGTTTAGTGCAAGCTTTTGTTGAGTCATGTTGCCCACCACACCTGAGCTACCCCTATCAGAAGGTGCCAGGCCATACTTGACAAACTCTTTCCCGCGTCGAGCGCCTAATCCACGCATTACAGCGAGAGACGAAAGAACCCCACTGATAGAGAACTGCATGAACGTTCTCGGTATCGTCTCACCCCAGCGGCTGCACAACTATCGAGGAAAACCGCAAACGCGCGAAGGAAGATCAATGGTGAGAATATCTATGCCTGCCATTGAAACTAATTATTGACCTCGCCCGGAAGGGAATATCTGGACGCCAGATCGCTGAGCGCCCCCGATATCTTCCGCAACCCTGACACGAAAAATGCCTCGCATAATCTTTTTCCCATTCGTAGCGACCGGGAGACGGTAAGTAAAAGAATTCGTCAAGACCTCGAATATTTAGCAGCTCGTCACCGATGTGGTTGTAGCCGACTAGCTGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 502612-503352 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033896.1 Corynebacterium choanae strain 200CH chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 502612 36 100.0 29 .................................... ATGAAAGCATACTCATACGACAGCCCTAG 502677 36 100.0 28 .................................... CTGCACTTGTCGTTTGTGGCGCGTGCCG 502741 36 100.0 28 .................................... CTACCGGGCTCACCCCGCAGGCCTCGGA 502805 36 100.0 28 .................................... GTGCCGCTGCAGCCACTGTGACAGACAA 502869 36 100.0 28 .................................... GTGCAGTCTGAGGTGGCGCCGCTGAAGG 502933 36 100.0 28 .................................... GCCATCCGCCATGTAGTAGCACAAGGCG 502997 36 100.0 28 .................................... GTGCTGAAAGACAATGCGGCGGCGGTGC 503061 36 100.0 28 .................................... GCAGAGCGCGGCGAGGTGTGTTGGCTGT 503125 36 100.0 28 .................................... TTTGAGGTGTCGGTGGTGCCGATCGGTG 503189 36 100.0 28 .................................... CCACTAGGGCTCGCCGCACTTGGATCAT 503253 36 100.0 28 .................................... GGGCAGATGATCGAGACAGCGCTGGGTG 503317 36 94.4 0 ................................A..G | ========== ====== ====== ====== ==================================== ============================= ================== 12 36 99.5 28 GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC # Left flank : CGTTCAACGGAAATGGAAAAAGTCTGGTGACAATGCTTGAAGAATTTGCTCACCATTATGGTGCCTATGTTGAAGATAAAATCGAACGTTTAGTTGTTCCCCGATGGGAAGGTAGGAGATGATGCCTGCGAAAGGAGCAGATCCCGTGTGGTCGATGGTGATGTTTGATGTGCCTACCAAGACTGATGTTGACAGACGAAATGCAAACAGGTTCCGACATTTCCTTGTGGATGAAGGATTTGGCAGAGTTCAGTTGAGTGTCTATGCACAGTACTATCCGAACGGGGCCAGGGCGGTGACTGTATTGAAGAAAATCAAACAGAATTTGCCTCCAGGCGGAGACGTTAGGATTCTTCATATCACTGACAAACAGTGGTCGACCGCGAGCAGATTTTCACGGACTAAGGCTGCATCGATCGAGGAAAAGCCCGAAGTGGGCGTAGTTTTTTAGCCAACGATATAATAAAACCCCCTGGTAGAGCCCGCTTTTTGTGATTTAG # Right flank : GGTTGGTTTGGTCTGCAGAGGCCGGTATCCCTCACCGCGTTCGCCTTCGTTGCGTTCAAGGTCGTAGTACGACCGTGAACGCTGGTGATGGTTGAGGCTGGCGAAAGCTGACATCCACAAGGAGTTCTTTGGTTTCTTGGTGACTCCTCGGTTCGGGGTTAAGGAGCGGATTGATGCCTCTGATCGTCGTTGTTGGGGACTGAGACCTGCGTATGCTGCCAGCTGTGCGGGGCCGTGGAACGCTGAGAGGTCGCCGACACACGTAATGAAGATCGCCGCGATGTGTTCTCCTGTTCCAGGCATAGATTTGTCGATTTCGTACTCTGGCACGGTTTTCGCTGACTCGATCATGCGTTGTTGCACCTGCTGCCGTTTTTGGCCGTTGCCAGCATGATTGTGGTGTGAGTTTGCATGCTGTACCAATGATCTTGCTTCGCTGGCGTTGCAACAGTTTATCGGCTCTTCGCAGTTTAGAGTGCACAACCGGTCGCAAGGCATAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //