Array 1 45123-44152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRW010000022.1 Nostoc sp. FACHB-145 contig22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 45122 37 100.0 36 ..................................... ATCCATCATTTTCCGAGAACAGCCGCCGGGCTGAGT 45049 37 100.0 34 ..................................... AAGTCTACGTTTTCGGCGTAAACGTTGCACTTTG 44978 37 100.0 35 ..................................... GATTTTTTTGGGCAATCTACATTAGGTTTAGCGGC 44906 37 100.0 37 ..................................... TGAGCCGGAAGATTACCCATATGCAGCAAGCGGCGGC 44832 37 100.0 33 ..................................... ATAGGCTCCATTTTTCCTATGACTTGTACCCAA 44762 37 100.0 35 ..................................... GAGAGAAACCAAATCATAATTTTTATCCTCTAATA 44690 37 100.0 34 ..................................... CTGCTAGGGCTGCGGCTACAGGATTACTTCAGCC 44619 37 100.0 36 ..................................... TCTTCCTCTAACACTGGTAGTTCACCGACTGGGCAG 44546 37 100.0 34 ..................................... GTGAGCAACTTAAATCTACATCGCTCACAATTGA 44475 37 100.0 32 ..................................... TGAAGATGACGAAACTAAAGAAGAAGGGCAAA 44406 37 100.0 36 ..................................... GCTGTGCCTATTCTTCCTTTCTTAGGATTACTGGCA 44333 37 100.0 36 ..................................... GTAGGATAACTCAGACATTTAAGATACCTCCAAGGT 44260 37 100.0 35 ..................................... ATCTAATCAAAGATGCTAGGGAAGGATTACGCCGA 44188 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 100.0 35 GTTGCAACATTAACTAATCCCTATTAGGGATTGAAAC # Left flank : AAAGAACAACCCACCAGCGAAAGGTTTGCCGAGACAGCATTACTGATGTATGATATGCTCTCACGTATTAAAGAATCAACATTACCCGGAAGACCTCGTTTAGGTTTGCGACAGGTAAAAGTCACCGTAGGCGAGCCAATTTCTGTAACCGAACGCTGGGAAAAATCGCAAAATAACCGTCATGCAGCCAGACAAGCAGCCAGTACATTAACCAAAGATTTGCAGGTAGCGTTGGAGAATTTAATTCATTAGTTGGCTGTCTATCTTAACCAAATGCGCGGATGGGTAGGTGTAGAAAATTAGCTTTCAGAACAAATCGCTGTATGGCTTGCAATACAGGCTTTTGCAGAAAAATTTAATTATGATTACCCGCGCACCATGCTGTGTAGGGATTTCAGGTATTTTATGAAAATCGATTTACATTTACTTGTGTTATGATTAGCCCATCCGCGAAATTGAACCTTGAAAACCTCATACTAACGAACTTTCAGTCTCCCGCA # Right flank : TATTTACCTTGGTGCGTTACGCTGGCGCGATAACACACCCTACAAAACTACAAAACTGTAACTCTTTGCGCGAGTTTTAAAATTCTGGTTTTCCAATATTCGTGTCAGAAGTTATTTTGCACTTAGCCTAGTGGTTGACAGCTATACCATATCTCTTCTTGATGATGAAAGTCACAACCGCTTTTGGGAATCATAAGCTAGACAACCTTTGTTGAGGGTTACTGTCATTCGGCTATCTGCAAGGAGACCACAGATGCAGCTAAATTCGCTAAAGCGGCAATTTCTAGCCAAGCTCGATCGCCCATTTATCATAGCAGCGTTAATTATTCCTATTGTCCATCTCGGACTGGGATACATGGGTTTATCTATGACATTTGTTAATGGTGCATCAGCATTTTGGCCTTCGTTTGGTGTATTTTTAGCGGGAATGTTATTGGTAGGCTATCGTATCTGGCCTATCATATTTTTGAGTGATTTTACTGTAAGTTATATTCTTTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACATTAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 109601-110364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRW010000011.1 Nostoc sp. FACHB-145 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 109601 37 100.0 37 ..................................... CTTTCATTACCCCTCTTCTTGGTGGGGCATATCAGCC 109675 37 100.0 32 ..................................... CGGCTTGAGTGCCAGCAGTTCGTTCAGTCCTT 109744 37 100.0 35 ..................................... AATATTAAATTCGTGCCTAGAGTTTATGAAATCCG 109816 37 100.0 34 ..................................... TTTTTATTCCAGAATTCATCATTACGTTTTTGTA 109887 37 97.3 36 ...T................................. TTTTTCATTGCAAGATTCTACTCTTTACGGTTGTTG 109960 37 100.0 39 ..................................... TTTACGAAGCTCTAAGCCAATTATTCTCTTATCTGGCGA 110036 37 100.0 37 ..................................... AAGATTTGTAAATCCAAAGGTGACAGATTCCAACCAA 110110 37 100.0 34 ..................................... TTATTTTTTTTAATGGGCTGCTGGGGAGTTTTTA 110181 37 100.0 38 ..................................... GGTATCTTTCACCTAAGGCGGTAGATTATCTTGATAAA 110256 37 100.0 33 ..................................... GTATTTAGCTTGGCAAAGCACAAAAGCCTCGGA 110326 37 91.9 0 A...............................T...T | TC [110357] ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 99.0 36 GTTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Left flank : GTAGCTTTTCGGGGTTCTTGGAACCGCGATCGCGGCACAGGCTATAAAGTAGTATTTGTACCCTTTGATGCAAAAAGTAGACCACAAGGCTACTACGAGGATTTTCTAACAGGATTTTTGCTTGACCCATCTATTCCGACCACTTGGGGGCGACCTGTTGGTTTATTAGTGTTACCTGATGGTAGTTTACTAGTGACAGAAGAAGTTAATAACCGGATTTATCGAATTCAATATACAGGCAGCTAACATGATTTGAGATTTTTAATTAGCTGAATGCGCGGATGGGTAGATGTAAAAAATTGGATTTAAGGAAAAATGCTTGTACTCTTTACCAGATAAGCGTTTGCACCACAATTCAATCAAAAGCATCCGCGCGCCTTACCCTGTCTGAGTTTCAGCTATTTTGCATCAATCTATCTAAACTTTTGAATGCTACAATCAGACCATCCGCGACACTGAACTTTGAAAACCACATAAAACCGTACTTTCAGCCTCCCGCA # Right flank : TCAAACTATAATAATAGCGTCAGCCTTTAACGAGACTGACGCTATTTTTTTTAAATAAGTTCAGGACAAAATAACTAATAAATACGCCCTGAAGATTAATATAATTTCAACACAGTTACTCTATTAAACAGTACTGCGGCGAGTTAACAAATTCCACAAGAAAACGGCAATAATAGCACCCAGTACTGCGACTAAAACCCCAGGAATGCTAAGAGAAGGAGCCGCTAACGCAAAGTTACCCGTACTGAAGAATACTCCTAAGCTACCACCAATAAATGCACCGATGATACCTAACAAAATTGTTCCTAAAATCCCGCCGCCTTGATGACCGGGGTAGATGGCTTTAGCAATAGCACCAGCAATTAAACCTAAGACGATCCAAGCAAGAATGTTCATTGTATTTGTGTTTTGGTAAGGTTTTTTTCTGACACTTTCAGATTAACAAGTTCAATAGTTTTAGCCAATCTATCATCAGAATTAATTATGAATAGCCTGAAGGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 987-665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRW010000047.1 Nostoc sp. FACHB-145 contig47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 986 36 100.0 38 .................................... GTTACTTTGCAAGCGCAAGACCCGCCTCCCACGAATTA 912 36 100.0 34 .................................... GGCGTAGTTAAGCTAATGGCTTTTGATGAAGATT 842 36 100.0 36 .................................... TTGCCTTGAATTACAGTAAAGTTTGCACCTACAGCC 770 36 100.0 34 .................................... CTTGATGGAGACAAATCATTAATAGTAAAGTTGG 700 36 97.2 0 ........C........................... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 99.4 36 GTGCTTTAGCATTAGATGTCGTTAGGCGTTGAGCAG # Left flank : TTAGGTGAAAGCCGGGACTTGGTGAATGATATTACTCTTTTACCTGAAAATTACTGTGCAGAATCAATGCGATGGTTAATTCGTGATGAATATGGGTTACTCACTTTACCTTACTGGGTAGACCATGTAGGTTCAAGAGGAACACGATGGCTGCGTTACGAGATTCAGGAATGTCAAGTATTTCAACCACCAGAATTATCTTGGACTTTGGTTCAAAGTGATTAGAGGTATCTTAACTTTTGCAAGCACCTCTGCTTGGGAAATTTAAATGCTATCAAAAGTAGTTTTACTTTCTTATTTTACGAGCCTTTTAGGGATTTTATATGCTTCCAAGGTGCTTGCAACTTCCTAGAATGCTTTAAATATAAGGGTTAGCAGTTTTAACAACTTCGTTTTTGCTGTGAATAGCTATTAATTTTTGCAACTTGGCTAACCTTAAATAGTAGATGCTTGTAAAATTCATGTAGAGCTTAGGCAAGTCAATAAATATGGCTATCGCT # Right flank : GTAGAGATAGTGCCGTTATTCGTACATCCAGATTTGGGATTTGTCATGAAATGTCTTTAGGCGTTATTGGCTTAGATATAAATAAGTTTTCTCTGAAGACAAGATTAGCGATCTTGAGTATCTTCATTCCGGTAAATTTTGGCGATTATTTTTTCCCATTGCTCAATTTGGTTCTGTAGTTGTAATCGCCGATCGCTCAAATCTTGACTATCATCAACAGACACATCCTGACCGCTTAATCGTTCATGATAAATAGCAATCAGTTCGGTTAGGGCTTTTTTATTGCTTGCTGATCCTCCTGGGTCAGAGAACTCACATTGACTGGAATCAGCTTTCTGCCAATTCTCTCCACAAATTCAGACCGACTTAAATCCATGCTGTCGGCGATCACATCTAATCCTTCAATCCCGGTAGGAGTTAGGGCTAGGTTAACTCGTTTCTTCACCTCATCGTACAGTTCTGGTACGTCTTTTTGACCTTTTTGCCCTTTCTTACCCATT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTTAGCATTAGATGTCGTTAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 21848-22184 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRW010000061.1 Nostoc sp. FACHB-145 contig61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 21848 37 100.0 37 ..................................... GTTAAGCCCTTTTCCCAATTACGCACAGTATCTTCAT 21922 37 100.0 39 ..................................... ACAATGGGCGAAACGGCACAGATGGGCGAAACGGGCGTG 21998 37 100.0 36 ..................................... AATTTATATAAGATTATTTTCTTTTAAATAACAAGC 22071 37 100.0 40 ..................................... CTAAAGCTGATGCCGGACGGACGGATAGCATCGACGCAGA 22148 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 100.0 38 GTTTCCACTAACCATTACCCCGCGAGGGGACTGAAAC # Left flank : GAGCCAGATAGCAAATACTTTGACCCCAAATCAACGCCAGAATCACCGCGTTGGCAAACAGTTGTAGTAGAGTACGTTGAAACATTTGAGCAGCCCATCTTGCTGTCAACGCTCAAAGAAAAATTTAGCCCTGAAGAATTAACATTAGTCAGAACAGGCAATCGGTTATCAGTCATGCCCGTGAGTGAGGTAGTAGCTCAGAAAATTTTAGCGATGAAAACGAGCTAAATGTAGCTATAGTCAAGGAAATACTCGACAAAGTTCAGTAATCGGCATATCATGGCTGTATCAGCTTGATAATTGTCGAGTTAAAGCGGGGTCAAAAACCCTGAAGACTCGTCAAAATCGCCAGAACCTTGACAATATAATAGTTATAGCGTTTCATAAAATGGGGAAGTTGCAAATTAGTTGCAATAAGAACGGCTGAAAATGACTAAAATTTTCTACTCGTCAAATCGCTTCCCAGGAAGCTTGCCCTGTAATAGTTTCAGCACCGGGCG # Right flank : CTAATAAATTTATGAGCGATCACGCTCTGCCATAAGTCCCCTAATGGGGATTAATTGAATCAAATTCTTAGCTTTCGTTACAGAGTGCTTGAACCACCTGTGAAAACTCCTGGGTCAGAAAGTCCGAACCGCTTGCACTATAAACTTGCTGCAACTGTTGATAAAACCACAGAGTTCCTTCCCTACCAGTTTTGAACTGTTGCCAAACGCTACTACCATGTTGTCGGAGGTCGGACAATAACGACCTCGCATTGTGCAGCTTATCTGCCAAAGATACCCGCCGGACTGATGGTGAAGCATGACGCAGGTTTTCTAAATACCTTTGCTTGCGCTCTTTCCAAGGTGGTTTGGGGTGTGTGTCGGATTCGGTACAGCCATCCACTATTGCAACGACTGTTTCACCGAAACGCTGGCGGATTTCCTCGCGTGTAGATTTGCCGCCTTGGTCTTCAACCGCATCATGTAATAGGCCAGAGATCGCTTCCTCTTCGGTTCCGCCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACTAACCATTACCCCGCGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 46074-45224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRW010000061.1 Nostoc sp. FACHB-145 contig61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================== ================== 46073 38 92.1 37 A....T.A.............................. CGCTTCTTGATCGGGTGTTAGTCCCCCAGAACTAGAA 45998 38 100.0 35 ...................................... TAATTGTTCATCCATTGTTCAAAAGTTAGATTTTG 45925 38 100.0 33 ...................................... GGAGCTTACTTACCTAAAAAAGATATTTGGGTA 45854 38 97.4 38 C..................................... TTTTCCCGTTTCGTGGTTGCTGTGTGGTGATTTGTTCT 45778 38 100.0 35 ...................................... CAAACATTCAGATCAGCTAGTTCCTGCATGGGTTG 45705 38 100.0 34 ...................................... TAACAAAATAGAATCAAAAGTGCAACAAAAGAGA 45633 38 97.4 35 A..................................... CGGTTGTGCCTGTAACCTGTACTGCTAAAATTGAT 45560 38 100.0 37 ...................................... TTATTGAGCAGCTTAATAAAGAATTGAGCAAAATTGA 45485 38 100.0 42 ...................................... CATTATCCTTCGGGTGTAAATTTAGCGCGATTTTTTCCGTTA 45405 38 100.0 33 ...................................... CCTTCTGGAAAGAACTCATCGGGCAAGACTGGT 45334 38 100.0 35 ...................................... TCCTCTACACTGGGGTTTTTCAGCAGCAAAAGCAG 45261 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ========================================== ================== 12 38 98.9 36 TGTTTCAGTCCCCGTGAGGGGTAATAAGGTTTGGAAAC # Left flank : AGGAACAATGCCACTCGTTGAGACAGCGCGTTGATATGCCAACGATAGATTTGATTGGCGACTAGTTTCAGTTGCTTGCCGCTAGGGAGTAGTTGACCTTCTAGTGCGGAGATACTGAAGGCTTTTTCTGATTCGCCATCGTGGAGGTAAGCTGATAAGTCTGGGTCAACTTGGCGTACTTGGTCGAGAAACCAAGCGTGGAGTCCAATTGTGTATTGCGAGTAAAGAGAAGCCGTTGCCGTTGCCTCTAAATCAAACACTAAGCCTACTAATTGGGTGTCATCTGCCCATGTCGGCACTGAGTCTTTCGGTGCTGATTTGGCTCTAGGCTTACGCTTGGGGGCTGTGGCTGCTCTGGGCATCGTGTGGGTTGAGTCGAAGAATGATTCAATATTTTATGTGATATCATCCCCTTTTGGGGAAAATTACTGATGGGCAGAAGTAAATGCTCTTGTGGTGATCGCTGAGTTTAGCATCTTGTGATTTACAAAATTGCTAAT # Right flank : CGCTCGGTGCTGAAACTTAACCAGAGCAAGCTTCCTGGGGAGCGATTTGACGGATCGAAAATTTTGGTCATTTTCAGCCGTCCTTATTGCAATTAATTTGCACCTTCCCCCTTTTATGAAACGCTGTAACTATTATGTTGTCAAGGTTCTGGCGATTTTGACGAATCTCCAGGGTTTTTGACCCCGCTTTGACTTGTCAAACATCAAGTCGATACATTCATCATAAGACGATTGTTTGCTCTTGTCGAGGAATTTCCGAACCATAGGTGATGGTTCTTCTCACTGCACCAGCATCAAGCACGTATATTCGTACAGCATCTTCTTCTGGCTTGATTAGTTTTTCTATTTTTGTCTGTAGTGTAGCAAATTGTACAGGTGTCAGAAAGCATTCAAACACACTGTATTGCGTCCATTTGCCATAACCAGACAACATTTTATGCAAACGAGTGCGACGTTTGTTAGCTGCTTTGTTATCAGGCAGATCGTAAATAATCAGATAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCAGTCCCCGTGAGGGGTAATAAGGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 23017-23933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRW010000064.1 Nostoc sp. FACHB-145 contig64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 23017 37 100.0 39 ..................................... AACCAAGCCAAATTAAATTAGTAGGCGAAACTGAGCCAG 23093 37 100.0 36 ..................................... AGAATCAGATTCTTGCAAAAATCTTAATCTTCGCCA 23166 37 100.0 35 ..................................... AAGTTTTGGAATAGCTTCCTGGTTCACTTTCTCTT 23238 37 100.0 42 ..................................... TTTCAAATAAGTCAACACCTGATTTTTGAGAATAATGCTCAA 23317 37 100.0 37 ..................................... GTATACTTTTTTATATAGTGGAGGTTTTGAACCTTCA 23391 37 100.0 34 ..................................... ATTTTGTAGACTTAGTATCTTTATCAGTATCTAT 23462 37 100.0 36 ..................................... AGCATCACAAGACCAACAAAAAACACCTAATCAAAA 23535 37 100.0 35 ..................................... CAGGACAGGAAACATATAATAGAACTTTTCTAACT 23607 37 100.0 35 ..................................... AGTAGTTACAATAACTATCTTTTTATTTAGTGACC 23679 37 100.0 39 ..................................... CCGCTTCGAGGAATGCTTTACTCATCTTACGACCTCTAC 23755 37 100.0 35 ..................................... AGTAGCCATACTCCATAATTAAACTCTACAAAAAA 23827 37 100.0 34 ..................................... AAACATCCTTGCCATTTATCCTCATGATCAGTAT 23898 36 83.8 0 .............G....A.....T..A....-.G.. | ========== ====== ====== ====== ===================================== ========================================== ================== 13 37 98.8 36 GTTGAAATTTCAATTAATCCCTATCAGGGATTGAAAC # Left flank : GAAAGTGGTTGTATCTTACGATGTTCCAGAAGACAAACGCCGGACGAAAATCCATAAAATTCTCAAGTCTTATGGACAGTGGGTGCAGTATAGCGTGTTTGAGTGCCAGCTTACCGAGACTCAATATGCCAAATTGCGATCGCGTTTGCACAAATTAATTAAACCAGATACCGACAGCATCCGCTTTTACTTTCTCTGTGCTTGCTGTTTTGATAAAATCGAACGCATCGGTGGCGAACAACCCCGCGACGAAACCATTTTCTTTGCTTAATGCGCGGATGGGTAGGTGTAAAAAATCGGGCTTCAGGAAAAATGGCTGTATTCCTTTTATGACAAGCGTTTGCAGAAAAAATAAATTAAATCTATCCGCGCGCCTTGTACAGTAGTCTAGGTTTCAGCTATTTCCCTTTCCTCAACCCATATTCTCTACTGTTATAATCAACCCATCCGCGAAACTGAACCTCGAAAACCAAATACAGACTAGCTTTTGGGCTACCGCA # Right flank : CATCTTACAAAATTATTTGCGCGCTTTCCTTTGCGTCTTTGCGCCTTTGCGCGAGGCAAAAGAATATTGATGCAAGAGGTTTATTGATACCTCCTACCTTAAAAATAGAACTCACCAAGGATTACCAATCATCGTAAAAGCTGACCAAAAATAAGGATGATTCAGGCTTTTATCACCCAGTTCTATCAAAGCTGGCGGGAGAGTAAAATCCCCGCTAGGAGTTTTGAGTTTGCCATCTTCTAGCCTGACTTCTCCTTTCAGCATTCCTACTTGTGCGCGTCTGAGGGCTTCGGCTTTGATGGGGGCTTTTCGCAGCTGTTCATAAAATTCGGTCATCAGTCCAAAAGTGCCTTCATCGGAGACATACCATAAACTTGCTAACGCAGACTTAGCACCAGCTTGCACAGCAAAGCCAGCAAAACCTAACTCTGCTTCTTCGTTACCCAAGGCTGTACGACAAGCACTCAACACTACTAATTCGACGGGTGGTTTATTCCAGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAATTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 1397-127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRW010000112.1 Nostoc sp. FACHB-145 contig112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1396 37 100.0 34 ..................................... TTTTCTGAGGTAATTAACCATCGAAGACCCGCAT 1325 37 100.0 34 ..................................... TGCTAGCTTGGCACTTACCACAGCTATTCCCCAA 1254 37 100.0 35 ..................................... ACAAAAGTTTATTTAATCTTTTAATTTGGGGAATT 1182 37 100.0 35 ..................................... GGGCATTTCCTACGAATGCCACTAAAAATCCTCCT 1110 37 100.0 37 ..................................... GATTTCTGATGAGATATTTGAATTAATCAAAACCAAA 1036 37 100.0 34 ..................................... ATTAAAAACTTGATTATCTCCATCAGCTACAACT 965 37 100.0 35 ..................................... GGGTGTAGGCATAAGTTTTTAATAATACAAAGAAA 893 37 100.0 36 ..................................... TTGACTCCCATTACACTCAAGATAGCCGAAGCCTCT 820 37 100.0 37 ..................................... TTGCAGAATAAATTTATCAAAAGCCAAAAATGCTAAA 746 37 100.0 37 ..................................... GCGTGGCTAACTAAGGTAATTCCCAGAACTTCATATC 672 37 100.0 33 ..................................... ACTTGGTATTGAGTCAACTGTCACGGAATCATT 602 37 100.0 35 ..................................... CCGTTACTGTTGTTGGGGTGCAGGTAGATTGTGTT 530 37 100.0 32 ..................................... TGGGAACGTTCCCGGCAAGACACCAACCTGTT 461 37 100.0 43 ..................................... TTTTTCTTAGTTGCCACTCCCAACAATTAAAAGTTAAGTCAAG 381 37 100.0 34 ..................................... ATAAGCGTATACTGGTGGCACTAAACACCAATTT 310 37 100.0 36 ..................................... TGCTGCTAATGGCAGAATCGTATTTATAAATCTTCG 237 37 100.0 37 ..................................... CCTATTTTTATCGCCATTACTGCGGGGTGGATGATGA 163 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 18 37 100.0 36 GTTGAAATTTCAAATAATCCCTATCAGGGATTGAAAC # Left flank : GCGCTTCACATACCTTAATGCTTGCACAGCGTAACGCCTGCCGTGGGAAGATAGCTCGTAAATCAGCCAGCATATCCAGCGATTTACAAGCCTCTAAACATTCGACGATGTAATCAATTGATTCGAGGGTGAGCCATTCGGGAGTTGCGTCCAACTCGCAGATGTGATACTTCATAAGGAGTGCAATCACCGTTTGGTTTAATCAAAGGCTTATATCTAGATTAAGCGATCGCTTAATTTTTGGTTTGCCAGTGTCCATCAAAAGATATCGATTTGCGCGGATGGGTAGGTGTCAAAAATTAGGCTTGAATGAAAATCGCTGTGTTACTTTCTGTACAAGCTTTTGCAAGAATAATAAATTAAAAATACCCGCGCGTATTGTGCAGACTGGGTTTCAGCCATTTTACGTAAATCAATTTAAATTTATTAACAGTATAATTCGACTATCCGCGAAACTGAACCTTGAAAACCTCATAAAAACTAACTTTCAGCCTTCTGCC # Right flank : CAACTGCCACCTTACCAAGTCGTAATTTATAGAACCCATTTGACATCTTATGAGGTTTTGAATTAAGGTACTCCTCAGCATCTAAAATCCAATGCTAATGGCGTATTCCAGCGACTTCACTGATGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 158375-157103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRW010000007.1 Nostoc sp. FACHB-145 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 158374 37 100.0 41 ..................................... ACCGAGTTTCAACCTGACAGAACTTTTAAACCTCAAGTAAA 158296 37 100.0 34 ..................................... TCGTAAAGAGATTAGAGAGATTCTTTTAAATGGT 158225 37 100.0 36 ..................................... AAGTTCTATAAACTTATTCCAGGTAAGCTGACTTAA 158152 37 100.0 34 ..................................... ACTATCTTGTTTTGTCAAGGGGTTTACTTAATGG 158081 37 100.0 37 ..................................... AATGGAACAGTTGAAAAAACTTTCTGAACGCCTTAAA 158007 37 100.0 34 ..................................... ATCTGGCATTTCGTAATATCCTTTAGAGGCTAGA 157936 37 100.0 33 ..................................... TCTAGCTCAGTGATTGTTGTAGCCGAATTTTTT 157866 37 100.0 35 ..................................... TTTTCCGATTAGCATAAGCCAAAGCTCCAGCACCC 157794 37 100.0 36 ..................................... CTGTACCATCACCATGTTTTTCAAAGTCGTAAGGTT 157721 37 100.0 40 ..................................... CTTTTTTCTATTAAATACCTACTTCTCCAACCTCCTTTAA 157644 37 100.0 34 ..................................... CAAACGTACACACATTTAATCAAACATAAAGGAA 157573 37 100.0 38 ..................................... CTTCTAATGGATACGGTTTAGCAGCTACCGGAACTCAA 157498 37 100.0 35 ..................................... TAGCAGCTACCGGAACTCAATGGATAAATGTAGAA 157426 37 100.0 32 ..................................... TCTGTATCCTCAAACGTGAAATCAGGTAATGC 157357 37 100.0 37 ..................................... TGAAGTACCAGAGGCTAATTTCAAAGCAACAGCTTAT 157283 37 100.0 35 ..................................... ACATAAAAAAGCGCGGCTGGCGCGCTTAACAATTG 157211 37 100.0 35 ..................................... AGTTTCTAATTGTGATAATGGGACTGCTTCATAAT 157139 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 100.0 36 GTTGAAATTACACCGAATCCCTATCAGGGATTGAAAC # Left flank : ATGGGTAAAGGAGATTTGGTGACTTTTCCTGCTGGTATGTCCTGTATATGGGAAGTTATCAGCGACGTAAAGAAACATTATTATTTTAGTTAATCCATAAATAGTCAAGGATTATTTCTTTTGCATCCTTGAATGATCCCAACGCAAGTATGCCTCAGTTTACTTGTATAATGGTTCGCAGCGATCGCCTAATTGCAAGTTTCACAATCCTTTGCAAAGCTCGTTACGAGATCACCAAAACAGTCATGCCAAAAATAAATAGTCTAATTGCGATCGCGCGAATGTGTAGGTGTACAAAAACAGGTTTCTAGCAAAATGCCTGTATCCTTTGCTGTGTAAGCTTTTGCGAAAAAAATAAATTAAAATTAGCCGCGCATCTTTACCTGTAAGGTTTTTGGGGTTCTTGCGTAAATCAGTTGATATTTTATAGTGATAAAATCAGACCATCCGCGAAACTGAACCATGAAAACCTAATAAGCATTGACTTTCAGCCTTCCGCA # Right flank : CTGCATTCATAATTGGGAAAGGATGCTATACAGCAGAGAAAGTGGCCTTTCACAGCAATTGAAATGAGGACGTAGATAAAAATGTTATTGCATTTGAGTACTTGGCAGGAAGTTGAAACTTATCTACAGCAGTCTAAGGGGATAATTTTCCCGATTGGTTCTACAGAACAGCATGGGCCGACAGGATTAATTGGTACTGATGCTATTTGTGCAGAGGCGATCGCTCGCGGTGTGGGTGAAGCGACTGGGGCGATGGTTGGGCCTACAATCAATGTAGGGATGGCATTACACCACACAGCGTTTCCTGGTTCGATTAGTTTGCGTCCTAGTACAATGATTCAATTAGTACGAGATTATGTGAGTAGTTTAGTCAAAGCTGGTTTTACTAAGTTCTACTTTATCAACGGTCACGGCGGTAATATCGCTACTCTCAAAGCAGCTTTCTCCGAAACTTACGCCTATCTCGAAGATTTACAAATTCCCGATGCTCATCAGGTGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTACACCGAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 7847-8030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRW010000139.1 Nostoc sp. FACHB-145 contig139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 7847 37 100.0 34 ..................................... GAGAAGTTATCTTTCAAACCAAAACTAGATAAAA 7918 37 97.3 39 ................................G.... CCAAGAGAATGCCGCAACGCCAGATACTGCCGAATGGGA 7994 37 97.3 0 ..............................T...... | ========== ====== ====== ====== ===================================== ======================================= ================== 3 37 98.2 37 GTTTCCAAACCTCATTACCCCTCACGGGGACTAAAAC # Left flank : TTGGGGTTGAGCTTCACTAGTAATGCAAGCACAGATACTACTAGATTGAGCTAATACGGGAGTTATATGTAGTGTTACCACTGAAGACGGTGCTAAAACTATAAAAGAGGAAATTCCTACTACCAATTGATTAAGCTTCATTAAAATATACCTTTACTAAATCTGAATTCTGAAGAATGTTTATCACCAGATAAGTAAAAAAAAACCTGATAATGTATACAGCAATTGTGATAATAAAATTTTGTTATAACAATAACCCTTAGTAAGTAGACGAACAGCAGTTAGTATGCTACTAGCTTGATAGCTGATATTTAATGTGAATTAAAAAATGCCGTTATTCAGAGGCACAGCAAAAACAATTCAAAATTCAAAATTCAAAATTATTTGGAATTGCTCTGCTTGGTTTTGACTATTATTGCTGCAATTATCTTGATGAGTTCTTCACTCTCATTAGACTGAAACACTCATACGCTGGAATATTTGAGCATTGATTGATGTGG # Right flank : CTATTAGCAATTTTGTAAATCACGAGCTGCTAAACTCAGCGATCGCCACAAGAGCATTTACTTCTGCCCATCAGTAATTTTCCCCAAAAGGGGATGATATCACATAAAATATTGAATCATTCTTCGACTCAACCCACACGATGTCAAGAGCAGCCACAGCCCCCAAGCGCAAGCCTAGAGTCAAACCAACGCCCACTTCCTCACCTCTAACATGGGCAGATGACACCCAATTAGTAGGCTTAGTGTTTGATTTGGAGGCAACGACAACGGCTTCTCTTTACTCACAATATACGATTGGACTCCACGCTTGGTTTCTCGACCAAGTGAGACAAGTTGACCCAGACCTATCAGCCTACCTGCACGATGGAGAGTCAGAAAAAGCCTTCAGTATCTCCGCACTGGAAGGGCAACTGCTACCTAGCGGCAAGCAACTGAAATTAGTCGCCAACCAAATCTATCATTGGCATATCAACGCGCTATCTCAACGAGTGGCATCCTTT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACCTCATTACCCCTCACGGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 5184-4636 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRW010000149.1 Nostoc sp. FACHB-145 contig149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 5183 37 100.0 32 ..................................... ACTTCTGGTGCTTCTGTTGCTGCTGCTGGTGC 5114 37 100.0 40 ..................................... TTAAGCTTTTTATTCCTAGTTACAAAGCCCTGGCTATTTA 5037 37 100.0 42 ..................................... TTCGGTGGTGCTGCTCTTATTTTTAAGAGATTTATCTACAGC 4958 37 100.0 35 ..................................... GAGTTTTAGGTTTACCAAATTCAACGAGCAATGGT 4886 37 100.0 32 ..................................... ATTGAGACTAAGGGTTATGAGCCTAATGAAAT 4817 37 100.0 37 ..................................... ATTTAGCTAACAAATGGGGGCTTAAATCAAAGCTTCC 4743 37 100.0 34 ..................................... CTACTTTAATTACTCCAAGCATTAAGCCCGATGG 4672 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 100.0 36 GTTGAAATTTCAAATAATCCCTATCAGGGATTGAAAC # Left flank : CGAACTCTAGCTAGTGCCACTGCCAAACTCAACCTCTGCTTCATCAGGCTCATGATTAAGAGGCTTGCAGGTTCTTCCTAAGATGTCAAATGGGTTCTATAAAAA # Right flank : ATATGTATAGTTCAGATTTGCGTCTTTGCGCCTTTGCGCGAGTCTAAATTCATCCTCTTAATCAGCAACGCCTTTAAATTAAATTCATCTGACACTACTTTTCCAGTGCTACAGCACCCACGCCATCCCTAATTAGATGACCATCTTCCATATAAATAATTCGGTCAGCAATATCTAAAATCCGGTTGTCGTGAGTAACTAGCAAAATTGTACAACCTTGCTCTTTGGCTAGTTTTTGCATTAATTCCACAACATCACGCCCAGATTGTTTATCGAGGGCGGCTGTAGGTTCGTCTGCTAAGACTATTTTAGGCTGACTTACCAATGCACGTGCGATCGCTACCCGTTGTTTTTGTCCTCCCGATAAGCTATCTGGATAGTAATTCAGCCGATGTTCTAAACCAACTGCTGCTAACATTGCTTGAGAACGCGCCAGCATTTCTTGAGGTAGAATTTTTGGTTGCACTTCCAAACCCATACGCACATTCTGGATAGCTGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 14960-15581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRW010000020.1 Nostoc sp. FACHB-145 contig20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 14960 37 100.0 36 ..................................... ATTCTTTACGCGCATTGCTACGCACTAAAAAAGCAA 15033 37 100.0 38 ..................................... AATATACCTAGTTGCTCTGTAACTCAATGGCTACGTTT 15108 37 100.0 35 ..................................... ATTCATCAAGACTATAGATGCCGTGATACAGTACC 15180 37 100.0 35 ..................................... ATCAAACCGCTTCCCTTTCTTTGGATGGCAGCACT 15252 37 100.0 38 ..................................... AATATAGAAACGATAAGCGGAATGTAGAAATCGCTGAA 15327 37 100.0 35 ..................................... GAAGCAAGATCGTTCAACACCACTACCCCAGATAG 15399 37 100.0 35 ..................................... GGCAGGACAACTTTGGCTAAATGGCGTGTTGTTTG 15471 37 97.3 36 ....................................C AGAAAAGACTCACAAGTAATTCTCGTGAGTCTTTTG 15544 37 73.0 0 ....A..T..A....A.A.T...AAC......A.... | G [15578] ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 96.7 36 GTTTCAACAACCATTCCGGCTAGGGGTGGGTTGAAAG # Left flank : GTTAACTCAACAATCCGAACCTTGAAAATATAATATTGTTGTAATAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTGCTGTGAAAAATCTGGGTTAGTTTGGCGGTTGGAAGACTGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTGTAAAATTTTATAGATGGGATAGGTGCGCTCCCAGCAATAAGAAGTAAGGCTTTGAGCTATAGCTGTTATTCATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCTCAAATATTTTTTTGGCATATCGAAGCGGGGTCAAAAACCCTGGAGACTTGCCAAAATCTTAAAACCCTTGTCATATCTTAACTTTAGAAACTAGTATGTCAGTTGATTTACTTTTTTGATGTAAGACAAAGGAGGCTTTTTCAGAGATATGCCAAATTTGTATCTGGAAAGCTTTATTTACAAGGGGTCTAGACGGCGGG # Right flank : GAATATTTGAAGCATTAAAATTTTTTTGAGAGGGTTGAAAGGCGCACTTCGTTCGGGAATATTCTGAACTTTTTAGCATATTCTACAAGTGTAGTGGAATCACTCCACCACATCACAGTTGCGACATTAATTTGCGAAAACTTAGTATAATCTAAGTTGATTGCAAAAAACAGTCAAAGCGACACTAATTTGCAAAAAACGACATTAATTTGCAAATTGCGACATATAATGTGCGAATGTACAAAAACATATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGCCAAAAAATGGCACTATCTGTCTATTTTACCACAACAAACAATGAAAAGCGAGTGCTAGCAATCAGGCTGATGAAAGTAACAAAGGACAAATGACTATTGACCAATAACTATATATGTGTGCAGCAAGGGCTTTGCTTGCTACGATTAAATTTGTATAACTTTCAGTGGTAAAAG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATTCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //