Array 1 2126978-2128443 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024901.1 Photorhabdus laumondii subsp. laumondii strain TT01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2126978 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 2127038 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 2127098 28 100.0 32 ............................ CGCATACCAAGCATCGAATCCCCGTTTAGATA 2127158 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 2127218 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 2127278 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 2127338 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 2127398 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 2127458 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 2127518 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 2127578 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 2127638 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 2127698 28 100.0 30 ............................ GGTAGCGCCCGATCCCTGATTCAGCTTTAA 2127756 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 2127816 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 2127876 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 2127936 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 2127996 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 2128056 28 100.0 32 ............................ TTTCTCTGTATCAATAACCGCTGTTGTGCCGC 2128116 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 2128176 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 2128236 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 2128296 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 2128356 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 2128416 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : GCGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTCAGGTTAGCTGTAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2133411-2133558 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024901.1 Photorhabdus laumondii subsp. laumondii strain TT01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2133411 28 100.0 32 ............................ AACAACAAAACCAACATGTCCTCCACCAATAT 2133471 28 100.0 32 ............................ AAGCATCCCGATCACTTCGGTAATATGAATGA 2133531 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATCATTTTTTATCTGTAATGTTTATATTTGCTCTCATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTCGATGACCGAATTCAGTGAATGGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATGCTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : GCGGCAATGGCTGGAGAAGATGAACAGGAGTTTCGCCAACGCTGTATTAGTGGATTTCAAAAAGCTGATGCTTTAGACACCATGATTGAGGCACTACAAACAACTGCGCAACAATTGAGTCAGGTGGCACGATGAATATTCTCTTAGTTTCCCAGTGTAATAAACGAGCGCTAACAGAAACCCGCCGAATTTTGGATCAATTTGCTGAACGTAAAGGTGATAGAACTTGGCAAACGGCTATCACCCAGGAAGGTTTAAATACTTTGCGTAAGTTATTGCGTAAAACGGCACGTCGTAATACGGCGGTGGCTTGCCATTGGATAAAAAGTGGTGGTCAAACTGAGCTGTTATGGATAGTCGGGAATTTGCGGCGCTTTAACTCACGAGGAGTTGTACCTACAAATACAACACAACGTGATGTGCTGAAAAGTCAGGATGAAAATCATTGGCATAGTGTAGAGGCTATCAGCTTATTGGCAGCGATTGCCGGGTTATTTCAT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2142058-2143465 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024901.1 Photorhabdus laumondii subsp. laumondii strain TT01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2142058 28 100.0 32 ............................ CAAGGGCACGATTTCCCTTTGGTTTTATATGC 2142118 28 100.0 32 ............................ GATGTGCGGAACAATTCAGTCTGCAAATACGT 2142178 28 100.0 32 ............................ AATCGAAGAGCTTCATCCTTGTGAGTTTCTTC 2142238 28 100.0 32 ............................ TGTCCAAAGAGTGAAGCCGGTTCCTCCTCCCG 2142298 28 100.0 32 ............................ GGCTGATGAGACAGTCCGATAATAGAACCCAC 2142358 28 100.0 32 ............................ TGGAATGCGACTTCATCACCATTTTCAATCAT 2142418 28 100.0 32 ............................ TTTACCGAAATCTTTTAGAGCGCTAGTTGTTT 2142478 28 100.0 32 ............................ AACATTTAAAACATTATTTATTGTTACTGTTC 2142538 28 100.0 32 ............................ ATTTACGTAATGACCAATGACGATGGACATGA 2142598 28 100.0 32 ............................ TCGTCGATTTGAACGCGACTCAAGCTGCAATT 2142658 28 100.0 32 ............................ ATACCGGATTGTTAGTAAAACCTATCCACTTT 2142718 28 100.0 32 ............................ CATAAGCGGGACTAACCCGCCATTAATCAAGA 2142778 28 100.0 32 ............................ TGTTGAGCAGATGCCAACTCGGGTAGTGTCCA 2142838 28 100.0 32 ............................ GGTCTCGATGTGCTGGTGGGTATCCCGGCTGA 2142898 28 100.0 32 ............................ TCACGTCATTTGTACCAATTTACTGACAACAG 2142958 28 100.0 32 ............................ ATTAGCGCAGATAACCCCAACTCGGAAGCTCT 2143018 28 100.0 32 ............................ TCCTATTTTTAAATAAATCATACACCTATGCA 2143078 28 100.0 32 ............................ GTTGATAGCTGGCGAGATAGCAGCGGTAAGCT 2143138 28 100.0 32 ............................ TGTCGTGTTTCATGTAGTAATCTATTGCAACT 2143198 28 100.0 32 ............................ ATCAGGAGTACGCAAGAGCCGGACACAGATAA 2143258 28 100.0 32 ............................ ACCTATGTGTTCTGCCGACTCTTTAACGTCCA 2143318 28 100.0 32 ............................ AATTAGCGAACAACGTAACATTGTTGATTCTG 2143378 28 96.4 32 ...........C................ ATTACGCAAGCTGTCACTAATGTTGCGTGCCC 2143438 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTACCGTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGATTGATATCCAGCCAATTCCCCAAGAAACTAAGTACCGCTGTGTCAGCCGAGTGCAGGTTAAAAGCAGTGCGGAACGACTTCGTCGTCGTGCTATTAAAAAGGGATGGTTAACGGGGGAACAAGCTCGGCAGCGTATTCCTATCAGCAAAGAACAACGTACTCATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAATTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTCGATTGAGTGCGCTAAAAAAGCAACCTATTTTCTTCTCGATATGCATCAATTGTTATGCTTTTGTGCATATTCTCCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAGCCACTTGCGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAAGGGTTGCTACTGGGTGGTAGCCTTTGGGGACCATGACCACATCCTTGTTGTAAATAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACCCGTTGCATGCAGAATCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAACTGGTACAGCCTTCGTCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTGTTATCCGGTAGAATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2392120-2392267 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024901.1 Photorhabdus laumondii subsp. laumondii strain TT01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2392120 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 2392180 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 2392240 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : AACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCGGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGACGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 2395200-2395827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024901.1 Photorhabdus laumondii subsp. laumondii strain TT01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2395200 28 100.0 32 ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 2395260 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 2395320 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 2395380 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 2395440 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 2395500 28 100.0 32 ............................ TGATGCCGACGAACGGCAACAATGCCGGTGAT 2395560 28 100.0 32 ............................ TTTGAAAACTCCCTGAAGCAATGGCGTGACCG 2395620 28 100.0 32 ............................ AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 2395680 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 2395740 28 96.4 32 .C.......................... AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 2395800 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACAA # Right flank : AAGAGGATTAATTGAGCGCTTTTAGTGAATATTTATTCATTGCACCACAGCGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTTCTAACTCACTGTTTTATCAGCGAATTTCATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAATCCCTTGTGTCTACCGATTTCACCACCTGGGCTGAATTTGGAGGCGCGTCCCGGAGTCGAACCGAGGTTGACGGATTTGCAATCCGCTGCATGGCCACTCTGCCAACGCGCCTTTCTATATTCAACGACTAATTCAGCATCCAACTTCTGAACAGTAAGTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCAACCTTGGCAAGGTTGTGCTCTACCAACTGAGCTATTCCCGCACCGCTTTGAACTAGCTGATTTACTTATTTGTTTTCGTAAATCTCATGTGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 2475404-2475731 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024901.1 Photorhabdus laumondii subsp. laumondii strain TT01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2475404 28 100.0 32 ............................ TGTAAGAACGATACCAAAGACAAGTATTCCCA 2475464 28 100.0 32 ............................ TTGTTTATTCTTAAGAACAACGTAGTAGCTGG 2475524 28 100.0 32 ............................ TATTAAAGGGGATCAAAATGAATACATCAACA 2475584 28 100.0 32 ............................ CTTTTGAAGGGCTAAGTGTTGCCGGGCCGATA 2475644 28 100.0 32 ............................ GCAAGTAAACCCGGTGGCTATAATCTCATCTC 2475704 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAGGATCACGTATTAACCGCATTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAATCTGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGAGTGGATTTTAATCTATTGATTTTTAATGGGATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGCTTAAAGTTAATATGTAACA # Right flank : ATGAGTAAGCTTCAATGAGTTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTACAATATCGCTACTCTGTAAATAAATATTTCCGAGTAATTCATTTATCATGAAAATAATTTTAATGGTTTCTTAGTTACATAAAAATAGGTGTTATTCTAATTGGTTTATTTAATAAGTGCTGAAATTCCGTTTCATAATTATTTGATAAATGCTAACTTTGATTTTATATTTTTGGGATAATAGTAATTGAATAGAAAAAATAGATAAATAAAGAGTGAGTGAAAATAAATATTCATATAACTTGAGTTCGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //