Array 1 126241-127710 **** Predicted by CRISPRDetect 2.4 *** >NZ_FORD01000002.1 Nitrosomonas sp. Nm34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 126241 28 100.0 32 ............................ ATTCACCCTCTAACCAAGCGCGCCCGCCTTTA 126301 28 100.0 32 ............................ AATTGCTCTCTCATCTCAGGCGTAGCATGTCG 126361 28 100.0 32 ............................ TGGAATGATGCTTTCTACGCTAATGGTTCTGA 126421 28 100.0 32 ............................ ACAGGGGCGCACTACTCGAATCAAGCTTTTTA 126481 28 100.0 32 ............................ CGATTAAAAAATTTTCAAGAAGGCAGTTTAAT 126541 28 100.0 32 ............................ TTTGATATAAAACCCATCAATAATAAGGTTAT 126601 28 100.0 32 ............................ AGGTGGATGCGCCAGCGTCGGAGGTGTCTTTT 126661 28 100.0 32 ............................ TGTTGCTGCAAAATCCACGATTTCAATTAACT 126721 28 100.0 32 ............................ AATAAGACAAGAGGAAAGCTCGCTATTGCAAA 126781 28 100.0 32 ............................ GTAAAATAACGTCACCAGCCAAGAAAAAAGTG 126841 28 100.0 32 ............................ CACACAGGCGGCACGAGGTATCTCTAAGCAGA 126901 28 100.0 32 ............................ GTAACCGCGGGCGGGCTTACATGCAGGAATAC 126961 28 100.0 32 ............................ GTAGCAATTGCGCCAGCGATGGTTACATTAAT 127021 28 100.0 32 ............................ TTTCTGACGTCCAACATGTTGACCAGCCATAA 127081 28 100.0 33 ............................ CGAACAAAACAACATCACGCCATTGTTCATTCG 127142 28 100.0 32 ............................ AGGGAAAAAGGTGCATACCACAACCAAAAAGA 127202 28 100.0 32 ............................ CATAATTTTTTAGCTGATAACGCGTTGAATCC 127262 28 100.0 32 ............................ CAGCTATTCCCACAACAACCATATTCAGAACC 127322 28 100.0 32 ............................ ATAACGGGATAAAAGAACTTAACTCTAGTGTT 127382 28 100.0 32 ............................ AATTTTTGATCCGTCAATTTGTCCTGTTTTTT 127442 28 96.4 32 ...........T................ AGAGACAAAATCTTATGCATATTTCTCTTGAT 127502 28 100.0 32 ............................ TTGTCATTATGATGGATTTTGGCTTGATTTTG 127562 28 100.0 32 ............................ TAAATGGGATTTGGGCAAGGAGCTTGCTAAGT 127622 28 100.0 32 ............................ ATTGGCGTGGATGGCTTGGACATGACCGTGGA 127682 28 100.0 0 ............................ | T [127708] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 GTTTGCTGCCGCATAGGCAGCTTAGAAA # Left flank : ACGCTCTCCCGTTTTGATGCCGCGAAATGGCTGAACCGCTTGAGCGATTATGTGCATTGCAGCAGTATTCGTCCGGTGCCTAGAAAACTTAAGGGATACGCGATCTACCACCGCCAGCAACCCAAAACCAGCAAAGAGCGCTTAGCCCGGCGTTATGCCGTGCGGCATAACGAGAGTTATGACGAGGCGTTGCTTCGCTATAACGACATGGTGCATACATCCATAACAACGCCGTTTATTCGCCTCAAAAGTTTGAGTAGCGGTCAGGTGTTCTGTTTGTGGATTAAGAAAACGATGCTATCAGAACACTTGGGAGCTACCTATAACAGCTATGGCTTAAGTGCTCAAGCCACTGTTCCTGAATTTTGACCCTATTTTTGCGCTCTTTAAAAATATAATTAAAATTCAATGGCTTGTGTGTTATGGTTTTAGTGGTGGGTATAATCGCTCAAAAGCTCTATAAACCGCTATGCAATTAGCTTTGATGTCTTTTAAAACCA # Right flank : AGAAAGTTGTCTGATTTTGCTAACGTCTCTAGTTGTTTAAAAAACTTGTAGCACCCAGCCAACGAGCTGGGCGAGGAATGAAACAAATAGTCCCATGGCTTCTCCTTTATCGTTAATAGTTTGGTGGAACTTATTATTCTATCAGCATAGGAGAGGCCGCCTATTCAGCCAAAGATTAAGTAAAAGCTATTTAGGAGGATCAATCTTGATTACTTTTTCTTTTCCGCAGTCAAGACAAATGAAGAAAGCATTTTTTGCGTCAAATCTTCCGAACGTTTCTTGGAATGTGCTTTCTATCCTTTTTAACTTTATCGATCCGCAAAGACTACATTGATAATCATGAGGATCTGGGCTATGAAGTTTTTCCATATTTTCAGTAAATGTGAAATTTTCGAGCTTAATATTCTGAATTTCCAATTCGAGATAGCCAATCATATCCGCTAAAGCGGAAACCTTTTTTCTGCATCCAGTAAGCTCTTTGTCATAAGCAACGAGCTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //