Array 1 30544-32036 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUQB01000009.1 Salmonella enterica strain 15E464 NODE_9_length_210836_cov_25.5748, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30544 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 30605 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 30666 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 30727 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 30788 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 30849 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 30910 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 30971 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 31032 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 31093 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 31154 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 31215 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 31276 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 31337 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 31398 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 31459 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 31521 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 31582 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 31643 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 31704 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 31765 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 31826 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 31887 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 31948 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 32009 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48168-50132 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUQB01000009.1 Salmonella enterica strain 15E464 NODE_9_length_210836_cov_25.5748, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48168 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 48229 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 48290 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 48351 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 48412 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 48473 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 48534 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 48596 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 48657 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 48718 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 48779 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 48840 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 48901 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 48962 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 49023 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 49084 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 49145 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 49206 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 49267 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 49328 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 49389 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 49451 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 49512 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [49554] 49554 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 49615 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 49676 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 49737 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 49798 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 49859 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 49920 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 49981 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 50042 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 50103 29 96.6 0 A............................ | A [50129] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //