Array 1 76771-76622 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJW01000005.1 Cronobacter sakazakii strain cro645A3-1 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76770 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 76710 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 76649 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 358668-357479 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJW01000002.1 Cronobacter sakazakii strain cro645A3-1 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 358667 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 358606 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 358545 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 358484 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 358423 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 358362 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 358301 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 358240 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 358179 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 358118 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 358057 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 357996 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 357935 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 357874 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 357813 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 357752 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 357691 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 357629 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 357568 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 357507 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 387817-385104 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJW01000002.1 Cronobacter sakazakii strain cro645A3-1 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 387816 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 387755 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 387694 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 387633 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 387572 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 387511 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 387450 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 387389 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 387328 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 387267 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 387206 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 387145 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 387084 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 387023 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 386962 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 386901 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 386840 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 386779 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 386718 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 386657 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 386596 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 386535 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 386474 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 386413 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 386352 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 386291 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 386230 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 386169 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 386108 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 386047 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 385986 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 385925 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 385864 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 385803 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 385742 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 385681 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 385620 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 385559 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 385498 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 385437 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 385376 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 385315 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 385254 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 385193 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 385132 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //